Carg14263 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAATTGTGGAGGCACTAGAAAGTAAGGGTTGCCGAGTGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTAAGTTTGATAACGAGGCAGGTAGGTATCATTCACCCCCTTTTACCTTAAATGCGAAAAGAGATATTGATTGTCCTTCCCATAGGAAGTTTGTGGGACATTTCTTTCCAGTTATACCAAATTCAAGTTAATTCTTATTGTTGAACATATAAATTATTTCAAAATATAAGATGTTAGTAATCAAGGCCGTATTTTTCATTTTAAAGAAGATCACATAACGATAATCTTTCACTTTTTTTCATGTTTATTATAATATGACATTATTGTCATTTTTCTTGTAATGAAATTTGAAAGATATCATTTGAAGGCCATGCCCCTACATTATTATTAATGGGGCATCATAAACTATAATTACAATTATAACTAGGGAAAAGTTGCATCGTAATGATATCCTTGGACACTTTTCAGTTCAAAGAATCTGGGGCAGAGCTTTCAAGAAGGGTGCAAAATTTGCTTATGATTACTCGTGGCCAACCAAATGGCTCCGGTGCTGGTAATTCCATCTATCTTCAAGGATCTGCAAAAATACACGAACAGAGTCTTGCTGAAATGCAGGAGGTCTGCTTTCTCACTTGTAGTTTTGCTGGAAATTATTGTCAAATTTAGTAACCAACTTTATCTATATTTACTTTTTTGTGCCAGGTTTTGCAGCAGCAGACGGAGGCCATTGCTAGACTTGGAACTGTGTTAAAGCGAGACGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACAGATGATCCGAGTTAAAGGGGGGAATTGAATTCACATTTCTAGCCATTGTTTTGTTTTGTTTTGTTT ATGAGAATTGTGGAGGCACTAGAAAGTAAGGGTTGCCGAGTGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTAAGTTTGATAACGAGGCAGTTCAAAGAATCTGGGGCAGAGCTTTCAAGAAGGGTGCAAAATTTGCTTATGATTACTCGTGGCCAACCAAATGGCTCCGGTGCTGGTAATTCCATCTATCTTCAAGGATCTGCAAAAATACACGAACAGAGTCTTGCTGAAATGCAGGAGGTTTTGCAGCAGCAGACGGAGGCCATTGCTAGACTTGGAACTGTGTTAAAGCGAGACGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACAGATGATCCGAGTTAAAGGGGGGAATTGAATTCACATTTCTAGCCATTGTTTTGTTTTGTTTTGTTT ATGAGAATTGTGGAGGCACTAGAAAGTAAGGGTTGCCGAGTGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTAAGTTTGATAACGAGGCAGTTCAAAGAATCTGGGGCAGAGCTTTCAAGAAGGGTGCAAAATTTGCTTATGATTACTCGTGGCCAACCAAATGGCTCCGGTGCTGGTAATTCCATCTATCTTCAAGGATCTGCAAAAATACACGAACAGAGTCTTGCTGAAATGCAGGAGGTTTTGCAGCAGCAGACGGAGGCCATTGCTAGACTTGGAACTGTGTTAAAGCGAGACGTTAGAGACATGGAAATCATAATGGCTGAAGACAAAGAGATGACAGATGATCCGAGTTAA MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMTDDPS Homology
BLAST of Carg14263 vs. NCBI nr
Match: KAG7032358.1 (Nuclear pore complex protein NUP54, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of Carg14263 vs. NCBI nr
Match: KAG6601593.1 (Nuclear pore complex protein NUP54, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of Carg14263 vs. NCBI nr
Match: XP_022957465.1 (nuclear pore complex protein NUP54-like [Cucurbita moschata]) HSP 1 Score: 224.9 bits (572), Expect = 3.6e-55 Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of Carg14263 vs. NCBI nr
Match: XP_022998033.1 (nuclear pore complex protein NUP54-like [Cucurbita maxima]) HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54 Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of Carg14263 vs. NCBI nr
Match: XP_023515339.1 (nuclear pore complex protein NUP54-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54 Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0
BLAST of Carg14263 vs. ExPASy Swiss-Prot
Match: Q8GYF7 (Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana OX=3702 GN=NUP54 PE=1 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 9.7e-35 Identity = 81/119 (68.07%), Postives = 95/119 (79.83%), Query Frame = 0
BLAST of Carg14263 vs. ExPASy TrEMBL
Match: A0A6J1H0M2 (nuclear pore complex protein NUP54-like OS=Cucurbita moschata OX=3662 GN=LOC111458857 PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 1.8e-55 Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of Carg14263 vs. ExPASy TrEMBL
Match: A0A6J1KFN7 (nuclear pore complex protein NUP54-like OS=Cucurbita maxima OX=3661 GN=LOC111492801 PE=4 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 5.1e-55 Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of Carg14263 vs. ExPASy TrEMBL
Match: A0A6J1DDY9 (nuclear pore complex protein NUP54 OS=Momordica charantia OX=3673 GN=LOC111019650 PE=4 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 7.2e-49 Identity = 110/121 (90.91%), Postives = 113/121 (93.39%), Query Frame = 0
BLAST of Carg14263 vs. ExPASy TrEMBL
Match: A0A0A0KPW8 (Nup54 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G589970 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 9.3e-49 Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0
BLAST of Carg14263 vs. ExPASy TrEMBL
Match: A0A5A7SSX4 (Nuclear pore complex protein NUP54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002170 PE=4 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48 Identity = 109/121 (90.08%), Postives = 113/121 (93.39%), Query Frame = 0
BLAST of Carg14263 vs. TAIR 10
Match: AT1G24310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink). ) HSP 1 Score: 147.5 bits (371), Expect = 6.9e-36 Identity = 81/119 (68.07%), Postives = 95/119 (79.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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