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Carg14259 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGGATTTTTGGCAACTATTCGGCGCCTGTACCTCTCCATCTACAATTGGACTCTCTTCGTCGGATGGTAAGTTCTTCCCCCTTCTCAATCACTTCCCTCTTCATATTTCTACTCGTAATGTAAAATTTTGCTTGGGTGTTGAAGGGTTCAGGTGTTCTACTTCTCAGTCAAGCAATTGAAGGAATCTGGTCACCAACAGGTATATAATGCCGTCGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGA ATGGCGGGATTTTTGGCAACTATTCGGCGCCTGTACCTCTCCATCTACAATTGGACTCTCTTCGTCGGATGGGTTCAGGTGTTCTACTTCTCAGTCAAGCAATTGAAGGAATCTGGTCACCAACAGGTATATAATGCCGTCGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGA ATGGCGGGATTTTTGGCAACTATTCGGCGCCTGTACCTCTCCATCTACAATTGGACTCTCTTCGTCGGATGGGTTCAGGTGTTCTACTTCTCAGTCAAGCAATTGAAGGAATCTGGTCACCAACAGGTATATAATGCCGTCGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGA MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVLEVFPDRFWFMS Homology
BLAST of Carg14259 vs. NCBI nr
Match: KAG7031326.1 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 147.1 bits (370), Expect = 5.6e-32 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
BLAST of Carg14259 vs. NCBI nr
Match: KAG6600692.1 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25 Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of Carg14259 vs. NCBI nr
Match: XP_022942935.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25 Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of Carg14259 vs. NCBI nr
Match: XP_022942204.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25 Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of Carg14259 vs. NCBI nr
Match: XP_022975564.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X2 [Cucurbita maxima]) HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25 Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of Carg14259 vs. ExPASy Swiss-Prot
Match: Q8VZB2 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana OX=3702 GN=PAS2 PE=1 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 2.4e-17 Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0
BLAST of Carg14259 vs. ExPASy Swiss-Prot
Match: Q7XSZ4 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2) HSP 1 Score: 88.6 bits (218), Expect = 3.1e-17 Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0
BLAST of Carg14259 vs. ExPASy Swiss-Prot
Match: Q5ZEJ0 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2B PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 9.1e-17 Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0
BLAST of Carg14259 vs. ExPASy TrEMBL
Match: A0A6J1IKY7 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita maxima OX=3661 GN=LOC111474885 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25 Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of Carg14259 vs. ExPASy TrEMBL
Match: A0A6J1FQM5 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447328 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25 Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of Carg14259 vs. ExPASy TrEMBL
Match: A0A6J1FX62 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447818 PE=3 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25 Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of Carg14259 vs. ExPASy TrEMBL
Match: A0A1S3BT98 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis melo OX=3656 GN=LOC103493277 PE=3 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 4.0e-23 Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 0
BLAST of Carg14259 vs. ExPASy TrEMBL
Match: A0A0A0L3F8 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis sativus OX=3659 GN=Csa_3G114430 PE=3 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 2.6e-22 Identity = 52/62 (83.87%), Postives = 59/62 (95.16%), Query Frame = 0
BLAST of Carg14259 vs. TAIR 10
Match: AT5G10480.1 (Protein-tyrosine phosphatase-like, PTPLA ) HSP 1 Score: 89.0 bits (219), Expect = 1.7e-18 Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0
BLAST of Carg14259 vs. TAIR 10
Match: AT5G10480.3 (Protein-tyrosine phosphatase-like, PTPLA ) HSP 1 Score: 89.0 bits (219), Expect = 1.7e-18 Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0
BLAST of Carg14259 vs. TAIR 10
Match: AT5G10480.2 (Protein-tyrosine phosphatase-like, PTPLA ) HSP 1 Score: 50.1 bits (118), Expect = 8.8e-07 Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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