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Carg14195 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCAAGTGCGTCAACCCAGATGGTAAAAAGTATGATAAAGGTACTTTCATGAAGCTTGTAACTGCTATCTCATTCTTTTAATTCACATTTTATGATCTTTTAACTGTCTATGAGTCCTTTTGTAGACAGTAACTTCTGCACCATCTTGACTTTTATGTGAATGATTTGATATGGTGTTTATTGGGTGCATAAAATTGTTCTTAAAGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCGGCTATAGTGGTCAAGTAATATTTCTCCCCTCAATGTTTAATTGAATTTCATACAATCTTGGTGCTATCTGGTAGTCGTTTCATGTCTCTTCATTGTTTAAAAGAACACTCGGAAACACCTTGCTGCTAGATATCTGCATCCATATGTACCTTATAGATTCTAAAAGAAACGACCAATGATTTCATAATCTTTCTCTGATGCTGAAATTTTGGAGAACGGATTTTACCTAGCGATCTATAATAGCCCAAGCTCACTGCTAGCAGACATTGTCCTCTTCGAGTTTTTCCTTTCGGGCTTCCAAACATGTCTCCTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTTGTTCTCCTCTCCAACTGATGTGGAGTCTCACAATCCATCCCCCTTCGAGGCCCGATGTCCTTGCTGGCACTCAATCAACTCTCCAATCGATGTAGGATCTCACAATTCACCTCTCTTCGAGGTCCAACATCCTCGCTGCCACACTGTCTGATGTCCACCCCCTTCGGGGCTTAGTGTCCTCACTGGCACACCGCCCGGTGTCCATCCCCCTTGGGACTCAGTGTTCTCGCTGGCACACCATCCGGTATCTGCCTTTGACACCATTTGTAATGGTCCAGACCATCAATAGCAAATATTGTCCTCCTTGGGCTTTTCCTTTTGGACTTCTCCTCAAATTTTTAAAATCCATCTACTAAAGAGAGGTTTTCACGCCCTTATAAGAAATGCTCTGTTCCCCTCTACAATCGACGTGGGATCTCACAGTTTCTATAAACTTTTCCTAAAGTAAAAAACAGAACAGTGATTATAAGCAAACAGCTTTATGTTCTAAAAACAAAATTATGCAAATGTTTCTTAGTATGGGAAGTGCCGAGTAGGCACTAATATCAAGCACAAACCCGTAACTTCAGCCGTGAAGATTGTGAACATTGTGAACATAATTGAAATCTGTAGTAGCAGGAGTAATATTTTTGAACTAAACTTAAGTTGTTGCAGAAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATGGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTGTAAGTGAATTGCCATGATTTTGCTCACCCATTTCTGCTGCTGATTTTCCTAAAAGTCTAAGTGGAAGTACTTTATGCATGATTCTAACTCGATTCATAAAACATATTTTGATGTCGGAATTGGGTGTATTTTACAGAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGCCAAATTCAGGGTAGACCAGAACATGTTCTTGCTCCTCCGAAAGCTCACATGAACCTCAACAATCTCTCCCAATTATCAATTATAATTCTAGATAACTTATGAATTGATTGAAGGCTTTCTTTAATTTGGAAGCTTGTGTGAAGC ATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCAAGTGCGTCAACCCAGATGGTAAAAAGTATGATAAAGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCGGCTATAGTGGTCAAAAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATGGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGCCAAATTCAGGGTAGACCAGAACATGTTCTTGCTCCTCCGAAAGCTCACATGAACCTCAACAATCTCTCCCAATTATCAATTATAATTCTAGATAACTTATGAATTGATTGAAGGCTTTCTTTAATTTGGAAGCTTGTGTGAAGC ATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCAAGTGCGTCAACCCAGATGGTAAAAAGTATGATAAAGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCGGCTATAGTGGTCAAAAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATGGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGCCAAATTCAGGGTAGACCAGAACATGTTCTTGCTCCTCCGAAAGCTCACATGA MAELLFDDIFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTGYSGQKGKKSLADKFEYIMHGKLYKLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT Homology
BLAST of Carg14195 vs. NCBI nr
Match: KAG6600626.1 (DNA-directed RNA polymerases II, IV and V subunit 8B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031262.1 DNA-directed RNA polymerases II, IV and V subunit 8B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 298.1 bits (762), Expect = 4.1e-77 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Carg14195 vs. NCBI nr
Match: XP_022983196.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983203.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983212.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983221.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983229.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima]) HSP 1 Score: 293.1 bits (749), Expect = 1.3e-75 Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0
BLAST of Carg14195 vs. NCBI nr
Match: XP_022942165.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata]) HSP 1 Score: 287.3 bits (734), Expect = 7.2e-74 Identity = 141/145 (97.24%), Postives = 142/145 (97.93%), Query Frame = 0
BLAST of Carg14195 vs. NCBI nr
Match: XP_022929200.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >XP_022929202.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >XP_022985172.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_023551974.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita pepo subsp. pepo] >KAG6577274.1 DNA-directed RNA polymerases II, IV and V subunit 8B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015358.1 DNA-directed RNA polymerases II, IV and V subunit 8B [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 284.3 bits (726), Expect = 6.1e-73 Identity = 136/145 (93.79%), Postives = 144/145 (99.31%), Query Frame = 0
BLAST of Carg14195 vs. NCBI nr
Match: XP_038901286.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Benincasa hispida]) HSP 1 Score: 280.8 bits (717), Expect = 6.7e-72 Identity = 134/144 (93.06%), Postives = 142/144 (98.61%), Query Frame = 0
BLAST of Carg14195 vs. ExPASy Swiss-Prot
Match: Q9M1A8 (DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=3702 GN=NRPB8B PE=1 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 1.1e-43 Identity = 83/142 (58.45%), Postives = 108/142 (76.06%), Query Frame = 0
BLAST of Carg14195 vs. ExPASy Swiss-Prot
Match: O81097 (DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702 GN=NRPB8A PE=1 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 1.4e-43 Identity = 84/142 (59.15%), Postives = 107/142 (75.35%), Query Frame = 0
BLAST of Carg14195 vs. ExPASy Swiss-Prot
Match: Q19826 (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis elegans OX=6239 GN=rpb-8 PE=1 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 1.4e-32 Identity = 65/145 (44.83%), Postives = 101/145 (69.66%), Query Frame = 0
BLAST of Carg14195 vs. ExPASy Swiss-Prot
Match: A8XT81 (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis briggsae OX=6238 GN=rpb-8 PE=3 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 1.6e-31 Identity = 64/145 (44.14%), Postives = 99/145 (68.28%), Query Frame = 0
BLAST of Carg14195 vs. ExPASy Swiss-Prot
Match: P52434 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens OX=9606 GN=POLR2H PE=1 SV=4) HSP 1 Score: 132.1 bits (331), Expect = 5.1e-30 Identity = 64/148 (43.24%), Postives = 100/148 (67.57%), Query Frame = 0
BLAST of Carg14195 vs. ExPASy TrEMBL
Match: A0A6J1J6Q9 (DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita maxima OX=3661 GN=LOC111481850 PE=3 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 6.3e-76 Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0
BLAST of Carg14195 vs. ExPASy TrEMBL
Match: A0A6J1FVR2 (DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita moschata OX=3662 GN=LOC111447307 PE=3 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 3.5e-74 Identity = 141/145 (97.24%), Postives = 142/145 (97.93%), Query Frame = 0
BLAST of Carg14195 vs. ExPASy TrEMBL
Match: A0A6J1ETP8 (DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita moschata OX=3662 GN=LOC111435865 PE=3 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 2.9e-73 Identity = 136/145 (93.79%), Postives = 144/145 (99.31%), Query Frame = 0
BLAST of Carg14195 vs. ExPASy TrEMBL
Match: A0A6J1J454 (DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita maxima OX=3661 GN=LOC111483257 PE=3 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 2.9e-73 Identity = 136/145 (93.79%), Postives = 144/145 (99.31%), Query Frame = 0
BLAST of Carg14195 vs. ExPASy TrEMBL
Match: A0A0A0KZC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G031020 PE=3 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 1.8e-70 Identity = 132/146 (90.41%), Postives = 141/146 (96.58%), Query Frame = 0
BLAST of Carg14195 vs. TAIR 10
Match: AT3G59600.1 (RNA polymerase Rpb8 ) HSP 1 Score: 177.6 bits (449), Expect = 7.5e-45 Identity = 83/142 (58.45%), Postives = 108/142 (76.06%), Query Frame = 0
BLAST of Carg14195 vs. TAIR 10
Match: AT1G54250.1 (RNA polymerase Rpb8 ) HSP 1 Score: 177.2 bits (448), Expect = 9.8e-45 Identity = 84/142 (59.15%), Postives = 107/142 (75.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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