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Carg14171 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AGGCGTTTTTTTGCTTCCAATTCCTAGGATTTTGACAATAGTTCTTTGTTTGCTCGCGAAGAAACCGGGAAAGTTCCACGCTGTTGCTCGTCTTTGACTACTGGTGGCTGGGATCATCTTCATTTTCATTTTCATCGGTTCCCTTCAATACAAAAAGGTCTTTCTCGCTCCCAAATTTTTGTTAATTCGTTTTCAACTTTGAAGACCTTGCTTCTTGCGTCGATCTTCCATCTTACACAGGTCGGTTTAATGGCTACGTTTCTCTATTCTTTCTTCCTTTTTTTTTTTTTTTTTTTAATTGCTGGGCAGTTGATTTCGGCGTGAAATTGATTTGGGTTGATGATTATACGCGATAGTTTTACTGGGTATTTTGAATTTTATTGGTTTTTTGCATCTTCTTCCGCGCGAAATGGAGGGGTGGGATTGTGTGTAATGAATGTTGATCTTTTTTTCAATCAAAATTTCTTAAGTAAGACGGAATTGCTTCGTCAATCGAGTTTTGCTAAAATTGTTCGCAATGTTGCTACAGAATCGAATGGCCGCTGGTGCGGCTCGTAAACGGGTGGGGCAATTGGTAGCCAATTCAGCTTTTCGTAGTTTGGGAGCTTCGAAGGTGTCTTCGTTCGAAAGCGCAATCTCTGACCATTCTGCAAATAATTTATCGGCATTCATCTCTTTGATTTCTCGGTACAGACACTGTGAATTTAGGCAGATCTCTCACCTTTCAAAATCCAACGGAAAGCGTTTATTTCTAGTCGACACGTTAGCCCTAGTAATTTTGCTCTCTTTGTTCTTGTTTTGGTTCTTATAAATTGCTTGCGTTGTAAAAGATTTGGAATCACTTGTATTTTTCTTCATATGATTCCCCATGAGGATACATGATATCTGAATGAAGATGGAGTGAGAATTTGAGAATCTCTGTGTTGTTCTCATAAGGGTTGTTGGAAAGTGATATGATGCATTTCTTCCAGGTTAGGAAATTGGAGGGTCAAGGGGTGCCCTCAAATCAAGCTGAAGCAATAACAGATGCCATTACCGAAGTGTTAAATGATAGCTTGGAAAATGTATCTCATTCATTTGTTTCAAAGGGGGAGATGCAGAAAGTGAGTTTCTAAGTACTCAATGTTTACATGTCTTGAATTCAGCTAATGTTATCATTGTACAATGATGGCAACAAGATGAGGTTCTTGATGAAATGAGCATCTATAACATTTATCATTTTACCATTTTTTGTTTTGTTTATAACCTACTAACCTTTCACTGGATGTCGTGTTATGTTTATAGATTGAAATGATCCAGGAGGCCAATTTGTCGAAATTCAAATCTGAAGTTCAAAGCTCACAGGTATTTACTAGTATTACTTATTTAATTGCTGTATTTCTTACACACATAGGTTTCATGATTCACTGTTAAATATAATAGAAGAGATATTTGAATTTCATATTCTCGCTGTATCTTGATTGATTATAGTCTTTTAGCATTGTTCTTTGTTATTGGCTTGCTGTTATACTATCCTTGTTTAGTTTCCTAGTCTGCTTAGATGATAGTATCTATTATAATACTGTTTAATTTGTTAGGTTTAGCAACAAAATGTCTTGTTGATATATTGTACTAGTATTTAGTTTCCATTGTTGTCTTGCATATCTTATGATATTGTTCCAGTTCTTGATTTCCTGTTCTTGCAATATGTGACATAATTAAAGCTTGATCAGGGCTTCAACTACCATGAGTTGGTTGGACAAACCTTGTATTTGTATGTTTTTTAGGTTATGGGATCAATTCTTAGCGGCATTCTATTCGAGATGTCAAATAGCTTACAAGTTTCTGGAATTTGACCAAATGTGGTATTTTGGATAGCATGTAGATGGGTGGGGTGGGAACTTTATACAGGTTGAATAACTGAACTTGAAAGTATAATACTTATTGCACTTGGATTTTTCAAACTATTTTGGTGTTTGCACTGCTAGTTAATGTAATATTTTTGTATACCATGGACATGGAGCTCCCATATGTTACTGGAAGGATTCTAAGAGATCTGACTTTAGAGTCGATGAACAACTTCGTTGTTGAGTACAATGGGGTCTAGGTTAAGGCTAAGATCTGCCCACTCTATAGCCTCTGCATCCTTCAAGTTCCTCCCAAGTCTAAGATCACAAAGTCTGTTGGTGGTGTTCCAAACATCTTTTAACCGTGGCCTCTTTATAATGAAAAAGCCTGAAGAGGTGGGGGTAATGCGAAGCCAAGGATCAGGCTCCATTACCAACTTGGCGACACATGTTGACAGGCTCCATTACCAACTTGGCGACACATCCTTCAACCCCATATAAGAATTCAACCATTCACCCATTTTACAACCATACTTCTTAGCTTCATCCTCAGTAATTGTGGGATCAACATTAATACCAATAATCTCTGATTTATGAAGATTAATGTGGTGTCTGGAAGCCTGTTTGAAAACCCCAACTCCCTTGAGGAGGTATTGAAATGATATCTTATCTTCGGACTCAGAAAATAGAATGGTGTCATCAACAAATGAGATATGTTTGATTCTTAAATTACCTTGGGCAACCCAAAAGCCTTTTATATGACCCTCGCATTGGCTTTAAATGGCAAACTGCTAAAGTTGCCCATAATCGTAATGAAAAGGAAGGGAGATAATGGACCCCCTTGTCTAAGGGCCCCAAGTTGCTAGAATTTTACCATGAGGACGGCCATTGATGAGAATTGAGAAATTAGTAGAGGAGATGCACCCTCTAATCCAAATTCTCCACTTAAGACCAAAGCCTTTGGAAGCAAGGATATTATCAAGAAAATCCCAATCCACCTTATCAAAACCCTCTTCTTTCTTTGCCATTCGTCAATAAGTTCATCGGCCTGAGAGATGCATCAAGGATTTGTCGTTGTCATCCCTCAGCAAATGTTGTTTGGTACCCTAATGGTGAGAGGAAAGACCTTTTCGTGACTTTCTGGAAGGACCTGAGTGATGATTTTATAGAGGCAAGTGGTGAGGCCAATAGGATGAGAGGCAACCTCAGTTCTAACATGGAGTTTCTTTGGAATCAAACATATTTAAGTCTTGAAATTTTATTTGTTAAGGAAATCTTATACTTTACAAAGTTGGTTTGTTAGTTTATGTTCTCTGACCATTGGATCAACACGTGTAATGTAGGGGCACCATTTTTCGTTATTGGGACACGAGACCGAAAAACTCCGAAATGATATTGATAAGATGCGCAATGAGTTGAGGTTTGTTTTAGCGTACCTCAGTTTATATGAAATGTATACTGAGTTCATATTTTAGACATTAGCTCTTGAATTGGTCTCATTTGTGAAGGACCTTTGATTATGGTGCAGGTATGAAATTGACAAAGTCACAGCTGGACAGCGATTGGATTTGAATCTTGAAAGAGGGTAAGAAGAAGCAGGAGAGTATGTTGGGGAATCAATTTTGGTTTGATTTTTCCTTTGGTTACACGTCTTTGTTGTTCACAAGTGCAGGAGGATACGGGATGAGCTAGCTAATCAGAATGCTGAAACAAACAACCTAACTAATAAACTTGATAGGGTAAGACCAACTACGTGA AGGCGTTTTTTTGCTTCCAATTCCTAGGATTTTGACAATAGTTCTTTGTTTGCTCGCGAAGAAACCGGGAAAGTTCCACGCTGTTGCTCGTCTTTGACTACTGGTGGCTGGGATCATCTTCATTTTCATTTTCATCGGTTCCCTTCAATACAAAAAGGTCTTTCTCGCTCCCAAATTTTTGTTAATTCGTTTTCAACTTTGAAGACCTTGCTTCTTGCGTCGATCTTCCATCTTACACAGAATCGAATGGCCGCTGGTGCGGCTCGTAAACGGGTGGGGCAATTGGTAGCCAATTCAGCTTTTCGTAGTTTGGGAGCTTCGAAGGTGTCTTCGTTCGAAAGCGCAATCTCTGACCATTCTGCAAATAATTTATCGGCATTCATCTCTTTGATTTCTCGGTACAGACACTGTGAATTTAGGCAGATCTCTCACCTTTCAAAATCCAACGGAAAGCGTTTATTTCTAGTCGACACGTTAGCCCTAGTTAGGAAATTGGAGGGTCAAGGGGTGCCCTCAAATCAAGCTGAAGCAATAACAGATGCCATTACCGAAGTGTTAAATGATAGCTTGGAAAATGTATCTCATTCATTTGTTTCAAAGGGGGAGATGCAGAAAATTGAAATGATCCAGGAGGCCAATTTGTCGAAATTCAAATCTGAAGTTCAAAGCTCACAGGGGCACCATTTTTCGTTATTGGGACACGAGACCGAAAAACTCCGAAATGATATTGATAAGATGCGCAATGAGTTGAGGTATGAAATTGACAAAGTCACAGCTGGACAGCGATTGGATTTGAATCTTGAAAGAGGGAGGATACGGGATGAGCTAGCTAATCAGAATGCTGAAACAAACAACCTAACTAATAAACTTGATAGGGTAAGACCAACTACGTGA ATGGCCGCTGGTGCGGCTCGTAAACGGGTGGGGCAATTGGTAGCCAATTCAGCTTTTCGTAGTTTGGGAGCTTCGAAGGTGTCTTCGTTCGAAAGCGCAATCTCTGACCATTCTGCAAATAATTTATCGGCATTCATCTCTTTGATTTCTCGGTACAGACACTGTGAATTTAGGCAGATCTCTCACCTTTCAAAATCCAACGGAAAGCGTTTATTTCTAGTCGACACGTTAGCCCTAGTTAGGAAATTGGAGGGTCAAGGGGTGCCCTCAAATCAAGCTGAAGCAATAACAGATGCCATTACCGAAGTGTTAAATGATAGCTTGGAAAATGTATCTCATTCATTTGTTTCAAAGGGGGAGATGCAGAAAATTGAAATGATCCAGGAGGCCAATTTGTCGAAATTCAAATCTGAAGTTCAAAGCTCACAGGGGCACCATTTTTCGTTATTGGGACACGAGACCGAAAAACTCCGAAATGATATTGATAAGATGCGCAATGAGTTGAGGTATGAAATTGACAAAGTCACAGCTGGACAGCGATTGGATTTGAATCTTGAAAGAGGGAGGATACGGGATGAGCTAGCTAATCAGAATGCTGAAACAAACAACCTAACTAATAAACTTGATAGGGTAAGACCAACTACGTGA MAAGAARKRVGQLVANSAFRSLGASKVSSFESAISDHSANNLSAFISLISRYRHCEFRQISHLSKSNGKRLFLVDTLALVRKLEGQGVPSNQAEAITDAITEVLNDSLENVSHSFVSKGEMQKIEMIQEANLSKFKSEVQSSQGHHFSLLGHETEKLRNDIDKMRNELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETNNLTNKLDRVRPTT Homology
BLAST of Carg14171 vs. NCBI nr
Match: KAG7031238.1 (FMP32 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 401.4 bits (1030), Expect = 5.0e-108 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
BLAST of Carg14171 vs. NCBI nr
Match: XP_022943108.1 (protein FMP32, mitochondrial-like isoform X2 [Cucurbita moschata] >XP_023523887.1 protein FMP32, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 391.7 bits (1005), Expect = 4.0e-105 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Carg14171 vs. NCBI nr
Match: KAG6600599.1 (Zinc finger CCCH domain-containing protein 19, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 391.7 bits (1005), Expect = 4.0e-105 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Carg14171 vs. NCBI nr
Match: XP_022943107.1 (protein FMP32, mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 391.7 bits (1005), Expect = 4.0e-105 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Carg14171 vs. NCBI nr
Match: XP_023523878.1 (protein FMP32, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 391.7 bits (1005), Expect = 4.0e-105 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Carg14171 vs. ExPASy Swiss-Prot
Match: P43557 (Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FMP32 PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 7.0e-12 Identity = 36/128 (28.12%), Postives = 75/128 (58.59%), Query Frame = 0
BLAST of Carg14171 vs. ExPASy Swiss-Prot
Match: Q9GZT6 (Coiled-coil domain-containing protein 90B, mitochondrial OS=Homo sapiens OX=9606 GN=CCDC90B PE=1 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10 Identity = 40/142 (28.17%), Postives = 74/142 (52.11%), Query Frame = 0
BLAST of Carg14171 vs. ExPASy Swiss-Prot
Match: Q4V897 (Coiled-coil domain-containing protein 90B, mitochondrial OS=Rattus norvegicus OX=10116 GN=Ccdc90b PE=2 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.9e-10 Identity = 41/142 (28.87%), Postives = 73/142 (51.41%), Query Frame = 0
BLAST of Carg14171 vs. ExPASy Swiss-Prot
Match: Q8C3X2 (Coiled-coil domain-containing protein 90B, mitochondrial OS=Mus musculus OX=10090 GN=Ccdc90b PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 6.6e-10 Identity = 39/139 (28.06%), Postives = 72/139 (51.80%), Query Frame = 0
BLAST of Carg14171 vs. ExPASy Swiss-Prot
Match: Q6DJ87 (Coiled-coil domain-containing protein 90B, mitochondrial OS=Xenopus tropicalis OX=8364 GN=ccdc90b PE=2 SV=2) HSP 1 Score: 65.5 bits (158), Expect = 8.6e-10 Identity = 41/147 (27.89%), Postives = 74/147 (50.34%), Query Frame = 0
BLAST of Carg14171 vs. ExPASy TrEMBL
Match: A0A6J1FS37 (protein FMP32, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447937 PE=4 SV=1) HSP 1 Score: 391.7 bits (1005), Expect = 1.9e-105 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Carg14171 vs. ExPASy TrEMBL
Match: A0A6J1FWD1 (protein FMP32, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447937 PE=4 SV=1) HSP 1 Score: 391.7 bits (1005), Expect = 1.9e-105 Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
BLAST of Carg14171 vs. ExPASy TrEMBL
Match: A0A6J1J4Q4 (protein FMP32, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481228 PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 6.9e-103 Identity = 207/210 (98.57%), Postives = 208/210 (99.05%), Query Frame = 0
BLAST of Carg14171 vs. ExPASy TrEMBL
Match: A0A6J1IZ86 (protein FMP32, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481228 PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 6.9e-103 Identity = 207/210 (98.57%), Postives = 208/210 (99.05%), Query Frame = 0
BLAST of Carg14171 vs. ExPASy TrEMBL
Match: A0A0A0KZG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043920 PE=4 SV=1) HSP 1 Score: 348.6 bits (893), Expect = 1.9e-92 Identity = 190/210 (90.48%), Postives = 196/210 (93.33%), Query Frame = 0
BLAST of Carg14171 vs. TAIR 10
Match: AT2G16460.1 (Protein of unknown function (DUF1640) ) HSP 1 Score: 245.7 bits (626), Expect = 3.3e-65 Identity = 135/180 (75.00%), Postives = 151/180 (83.89%), Query Frame = 0
BLAST of Carg14171 vs. TAIR 10
Match: AT3G51090.1 (Protein of unknown function (DUF1640) ) HSP 1 Score: 224.9 bits (572), Expect = 6.0e-59 Identity = 133/212 (62.74%), Postives = 157/212 (74.06%), Query Frame = 0
BLAST of Carg14171 vs. TAIR 10
Match: AT2G16460.2 (Protein of unknown function (DUF1640) ) HSP 1 Score: 209.9 bits (533), Expect = 2.0e-54 Identity = 115/159 (72.33%), Postives = 132/159 (83.02%), Query Frame = 0
BLAST of Carg14171 vs. TAIR 10
Match: AT2G35070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube development, pollen development; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1640) (TAIR:AT2G35090.1); Has 62 Blast hits to 62 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 5.0e-05 Identity = 34/111 (30.63%), Postives = 53/111 (47.75%), Query Frame = 0
BLAST of Carg14171 vs. TAIR 10
Match: AT2G35090.1 (Protein of unknown function (DUF1640) ) HSP 1 Score: 45.4 bits (106), Expect = 6.5e-05 Identity = 37/121 (30.58%), Postives = 59/121 (48.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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