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Carg14161 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCTGGACTGCAATAAGGTATTTCGCGACGAAGCCAAAGCCGAAGATGAAGCCGATTGAGTTGAAAACTCCACCGGAGCAAACGCAGACGATCACTAGAGTTATATTCGACATCGTTAGGGAGCATGGTCCGCTAACCATAGCCGAAACTTGGGATCGCGTTCAGGTAAGCATCGTATTCCTGTTTCTGTTTCGTCATTTTCATGTTTTGCTTCAATTTTATTTCGATTTCTCCATCTCATCTCTCTATGAATTGTGGAAATTTATTATTCTATATGAATTAGATTCACATAGAAATCAGAATGATGGAAGACCGCTAGAGTAGATGCTTTGATCATTTCAATTGGGGTTTAGTTTTGACCGTGAAGAATAGTTGGAAATGAGAATTCGGTTTTGCATTCTTGTTGAATTAATTGTTCAAGACAGTTTCATCTCGGGAGAAATGTTGCCTCTTTCCAGCATTTTAGGCTTCAAAGTTCTAAAAAACTAGTGTTACATTTAACCCATCCAAATGCCTCAGAAGTGCATACTTTCATAGATGATGGGCTCCCAATGTACCAAGTCTGAGTTGCTCTTTAGAAATGAAGGACACGGTTGTAAAACCTAATTAACAGATCCTGTTCAAGTAAGGTAGAAAGTCTGAGTTGCTCAAATCCTAGTCAAATGACCATTGCCGTATTTTCCATTAACAATGGGGATGATTGATGAAAGTGCTTTTAGCTTTTGAGTTGGTTTCTGTGTTGAAGGGTATTGGTGTAGTCATGTAACATAATAGCTCAACTAGAATGGGAAATGTCACAGTTCTGGGTACTGTTTGTTCTGTAACTTGGTGCTATTTTGTTAGAAAAAATCTTTATACGTAAATGGTGTTGTAATGAGCTGATAAGCGTCCATTTATTTTCAGGAAGTGGGTTTGAGAGGATTAACAAGCAAAAGGCACATGAAAATAGTGATGAGATGGATGAGGGAACGGCAGAAGTTAAGACTGATGTGCAATCACGTAGGACCTAATAAGCAGTTTCTTTATACCACCTGGTTCACAAAACCCAACTTCGGACAGGCAAAGCCACAGGGGCGTAATTCTTCCCAACCCAAGAGCCCTTGA ATGTTCTGGACTGCAATAAGGTATTTCGCGACGAAGCCAAAGCCGAAGATGAAGCCGATTGAGTTGAAAACTCCACCGGAGCAAACGCAGACGATCACTAGAGTTATATTCGACATCGTTAGGGAGCATGGTCCGCTAACCATAGCCGAAACTTGGGATCGCGTTCAGGAAGTGGGTTTGAGAGGATTAACAAGCAAAAGGCACATGAAAATAGTGATGAGATGGATGAGGGAACGGCAGAAGTTAAGACTGATGTGCAATCACGTAGGACCTAATAAGCAGTTTCTTTATACCACCTGGTTCACAAAACCCAACTTCGGACAGGCAAAGCCACAGGGGCGTAATTCTTCCCAACCCAAGAGCCCTTGA ATGTTCTGGACTGCAATAAGGTATTTCGCGACGAAGCCAAAGCCGAAGATGAAGCCGATTGAGTTGAAAACTCCACCGGAGCAAACGCAGACGATCACTAGAGTTATATTCGACATCGTTAGGGAGCATGGTCCGCTAACCATAGCCGAAACTTGGGATCGCGTTCAGGAAGTGGGTTTGAGAGGATTAACAAGCAAAAGGCACATGAAAATAGTGATGAGATGGATGAGGGAACGGCAGAAGTTAAGACTGATGTGCAATCACGTAGGACCTAATAAGCAGTTTCTTTATACCACCTGGTTCACAAAACCCAACTTCGGACAGGCAAAGCCACAGGGGCGTAATTCTTCCCAACCCAAGAGCCCTTGA MFWTAIRYFATKPKPKMKPIELKTPPEQTQTITRVIFDIVREHGPLTIAETWDRVQEVGLRGLTSKRHMKIVMRWMRERQKLRLMCNHVGPNKQFLYTTWFTKPNFGQAKPQGRNSSQPKSP Homology
BLAST of Carg14161 vs. NCBI nr
Match: XP_022942849.1 (uncharacterized protein LOC111447756 [Cucurbita moschata] >XP_023527194.1 uncharacterized protein LOC111790503 [Cucurbita pepo subsp. pepo] >KAG6600588.1 hypothetical protein SDJN03_05821, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031228.1 hypothetical protein SDJN02_05268, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 255.8 bits (652), Expect = 1.9e-64 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg14161 vs. NCBI nr
Match: XP_022983421.1 (uncharacterized protein LOC111482027 [Cucurbita maxima]) HSP 1 Score: 254.6 bits (649), Expect = 4.3e-64 Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg14161 vs. NCBI nr
Match: XP_038881247.1 (uncharacterized protein LOC120072805 [Benincasa hispida]) HSP 1 Score: 245.4 bits (625), Expect = 2.6e-61 Identity = 116/122 (95.08%), Postives = 120/122 (98.36%), Query Frame = 0
BLAST of Carg14161 vs. NCBI nr
Match: XP_022136836.1 (uncharacterized protein LOC111008437 isoform X1 [Momordica charantia] >XP_022136837.1 uncharacterized protein LOC111008437 isoform X1 [Momordica charantia] >XP_022136838.1 uncharacterized protein LOC111008437 isoform X1 [Momordica charantia]) HSP 1 Score: 235.7 bits (600), Expect = 2.1e-58 Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 0
BLAST of Carg14161 vs. NCBI nr
Match: XP_022136839.1 (uncharacterized protein LOC111008437 isoform X2 [Momordica charantia]) HSP 1 Score: 229.2 bits (583), Expect = 1.9e-56 Identity = 112/122 (91.80%), Postives = 116/122 (95.08%), Query Frame = 0
BLAST of Carg14161 vs. ExPASy TrEMBL
Match: A0A6J1FSI5 (uncharacterized protein LOC111447756 OS=Cucurbita moschata OX=3662 GN=LOC111447756 PE=4 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 9.4e-65 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg14161 vs. ExPASy TrEMBL
Match: A0A6J1J258 (uncharacterized protein LOC111482027 OS=Cucurbita maxima OX=3661 GN=LOC111482027 PE=4 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 2.1e-64 Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of Carg14161 vs. ExPASy TrEMBL
Match: A0A6J1C6J6 (uncharacterized protein LOC111008437 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008437 PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58 Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 0
BLAST of Carg14161 vs. ExPASy TrEMBL
Match: A0A6J1C5G7 (uncharacterized protein LOC111008437 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008437 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 9.4e-57 Identity = 112/122 (91.80%), Postives = 116/122 (95.08%), Query Frame = 0
BLAST of Carg14161 vs. ExPASy TrEMBL
Match: A0A1S3BSH8 (uncharacterized protein LOC103493216 OS=Cucumis melo OX=3656 GN=LOC103493216 PE=4 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 3.6e-56 Identity = 111/122 (90.98%), Postives = 114/122 (93.44%), Query Frame = 0
BLAST of Carg14161 vs. TAIR 10
Match: AT5G49410.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 190.7 bits (483), Expect = 7.1e-49 Identity = 92/120 (76.67%), Postives = 106/120 (88.33%), Query Frame = 0
BLAST of Carg14161 vs. TAIR 10
Match: AT5G49410.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73940.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 190.7 bits (483), Expect = 7.1e-49 Identity = 92/120 (76.67%), Postives = 106/120 (88.33%), Query Frame = 0
BLAST of Carg14161 vs. TAIR 10
Match: AT1G73940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 87.4 bits (215), Expect = 8.5e-18 Identity = 36/93 (38.71%), Postives = 62/93 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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