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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GAAATCGAACGCTCGACCATTACCAGGCGATCGGAGGAAGATGGCCTCTTTCCTCTTGAGCGTTCGTTGCCGAAATCGAACGCTCGACCATTACCAGGCGATCGGAGGAAGGGAGAGCAGAATCGAAAGAAGTTTCTCGCCTCCTCAAAAATAGAGGTAATGTCACTTCATTTAGTTTATGGGTAGTTTAGTCTTGGCTATTCTATTCTGGGTTTGAAATTTTAAGGGTACAGCCGGCTATTCCGATTTTGGGGTTCACTGGAGAACTCAGAGGTTAATCAAAGGATTGTATCTTTCCTTTTTTTTTTCTTTTGCATGTTATCGACACCTTTTGTATTTTTCGTGGTTTCGATTACGGAGGATTAGGGCGTTTTTAGTAGGTTCATTGCTTCCATGGCAACCTGATTATTATCTTGGACTCTTCGTTTCACACCCCGTCATCTTCTATCTCTTCTCGGGGGACAAACCTGATATTCAATTTCATGTGTTGGCAGATGAGAGGAGCTCGTATGTCACTCAGACTGGTTCCGACAACAGAGAGGGGAAGCACAAAGCAATTACTCTTGAAGCAGTTGGTCCTCTCACTGCCGGTGGGGTTTTCGCATCTGCTAGGAAT mRNA sequence GAAATCGAACGCTCGACCATTACCAGGCGATCGGAGGAAGATGGCCTCTTTCCTCTTGAGCGTTCGTTGCCGAAATCGAACGCTCGACCATTACCAGGCGATCGGAGGAAGGGAGAGCAGAATCGAAAGAAGTTTCTCGCCTCCTCAAAAATAGAGCCGGCTATTCCGATTTTGGGGTTCACTGGAGAACTCAGAGATGAGAGGAGCTCGTATGTCACTCAGACTGGTTCCGACAACAGAGAGGGGAAGCACAAAGCAATTACTCTTGAAGCAGTTGGTCCTCTCACTGCCGGTGGGGTTTTCGCATCTGCTAGGAAT Coding sequence (CDS) GAAATCGAACGCTCGACCATTACCAGGCGATCGGAGGAAGATGGCCTCTTTCCTCTTGAGCGTTCGTTGCCGAAATCGAACGCTCGACCATTACCAGGCGATCGGAGGAAGGGAGAGCAGAATCGAAAGAAGTTTCTCGCCTCCTCAAAAATAGAGCCGGCTATTCCGATTTTGGGGTTCACTGGAGAACTCAGAGATGAGAGGAGCTCGTATGTCACTCAGACTGGTTCCGACAACAGAGAGGGGAAGCACAAAGCAATTACTCTTGAAGCAGTTGGTCCTCTCACTGCCGGTGGGGTTTTCGCATCTGCTAGGAAT Protein sequence EIERSTITRRSEEDGLFPLERSLPKSNARPLPGDRRKGEQNRKKFLASSKIEPAIPILGFTGELRDERSSYVTQTGSDNREGKHKAITLEAVGPLTAGGVFASARN
Homology
BLAST of Carg14133 vs. NCBI nr
Match: KAG7031201.1 (hypothetical protein SDJN02_05241, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 209.5 bits (532), Expect = 1.4e-50 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 Query: 1 EIERSTITRRSEEDGLFPLERSLPKSNARPLPGDRRKGEQNRKKFLASSKIEPAIPILGF 60 EIERSTITRRSEEDGLFPLERSLPKSNARPLPGDRRKGEQNRKKFLASSKIEPAIPILGF Sbjct: 1 EIERSTITRRSEEDGLFPLERSLPKSNARPLPGDRRKGEQNRKKFLASSKIEPAIPILGF 60
Query: 61 TGELRDERSSYVTQTGSDNREGKHKAITLEAVGPLTAGGVFASARN 107 TGELRDERSSYVTQTGSDNREGKHKAITLEAVGPLTAGGVFASARN Sbjct: 61 TGELRDERSSYVTQTGSDNREGKHKAITLEAVGPLTAGGVFASARN 106
BLAST of Carg14133 vs. NCBI nr
Match: KAG6600561.1 (hypothetical protein SDJN03_05794, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 88.6 bits (218), Expect = 3.6e-14 Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0 Query: 4 RSTITRRSEEDGLFPLERSLPKSNARPLPGDRRKGEQNRKKFLASSKIE 53 R +RSEEDGLFPLERSLPKSNARPLPGDRRKGEQNRKKFLASSKIE Sbjct: 21 RGMRNKRSEEDGLFPLERSLPKSNARPLPGDRRKGEQNRKKFLASSKIE 69
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7031201.1 | 1.4e-50 | 100.00 | hypothetical protein SDJN02_05241, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6600561.1 | 3.6e-14 | 89.80 | hypothetical protein SDJN03_05794, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..48 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..19 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 30..46 |
Relationships
The following mRNA feature(s) are a part of this gene:
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