Carg13987 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13987
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mitochondrial import inner membrane translocase subunit TIM22-like
Location	Carg_Chr02: 6718690 .. 6722376 (+)
RNA-Seq Expression	Carg13987
Synteny	Carg13987

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAATTTTCAGCGAAACTAAACTGTCGCCGGACGATAGAGGAGGCAACGGAGAAGAAATCAAGGCTCCAATTGGCTTATCATTGATGGAGCAGGGGAAGCAGGGAGTGGTAGTTAAATTGAGCCCTCCACAGAACCCATTGGAGCAGGTTCAGGCTCGTTTCAAGGAACTTGAAAATGGGTTCAGAACATGGTTGGCCAAGCAGTCTCTCCCCGTTGAGGCCGCTGTTGTCACCGCCACCAGCGCCGCACAGGGCGCTGCTATTGGTGGCTTTATGGGCGTTCTCACCAACGACGTTTCTTCGTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCCTCTTTCAAGCAAGCTCAGGTCCTATTTTGGTTCCCCCTATTCGTTGTTTGATTTTATAATTTTTTCCTGATTGAAATGTGAGAACTGTCTTATTTGTTGAAATTCTGTAGTTTTATGAACAAAAGTGGAATTTGGGGGAGATGATTCTTGTAGTTTTCTTATGAATTGCAGGCTCTTGCTGGAGGTCCCTTGGTGCAAGCTCGCAACTTCGCCGTGATGACCGGTGTTAATGCAGGCATATCTTCTGTTATGAAGAGATTGAGAGGCAAGGAGGATGTTCAGTCAAGGTAAGGTTTTACGAAGTCTCCGCGTTTCCTTTTCCTTGTTGATTATTTATAAGGGTGTGGAAACCTCTCTCTAGCAAACGTGTTTTAGAAACCTTGAGGGGAAGCACAAAGAGAACAATATCTCTAGTGGTGAGCTTGGGCCGTTAGAAATGATATTAGAGGTAGACACTGGGCGATGTGCTAACATGGAGGTTGAGCCCCAAAGGGAGTGGACAAGGACGCTGGGCCCCGAAGGGAATGGGTTAGGGTGTCCAACATTGATTGGAGAAGGGAATGAGTGCTTGCAAGAACGTTGGGCCCCAAAGGGGATGAGTTAGGGTGTCCAACATTGATTGGAGAAGGGAATGAGTGCTTGGAAGAACGCTGGACCTTGAAGGAGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAATGAAACATTCTTCATATGGGTGTGGAAATCTCTCCCTAGCAGATGCGTTTTAAGAACCTTGAGGGGAAACCCAAAAGGGAAAGCCGAAAGAGAACAATATCTACTAGCGGTGAACTTGGGCTGTTATAAGTGGTATTAGAGATAGACACCGGACGATGAGCCAGCGAGGAGGCTGAACCCCAAAGGGGGTGCACACCTAGTGTGCCAGCAAGGACAGTCCCTCAGATTTCAACTCATTTTCTTCGTGTTAAAGATTCAGATTTGACATTTGAGAATGGGTTGGGAGAGTTTCATTTGGTGAGTTGATTATGGTTTCTAGACTCTTGGATCTCAAGGGTTTTTAAAATCTTAATAGCGTGTTTGAAGGCTTGGATCGTGTTGTTTGGGATTATTGGTGTAACGACCTATGCCCAAGATTTGGAATTTGGGCACTTGATAGCCTCGACATTTCCTTGCATCCCCTGCGACGTGGTCATGTTACTTCTCGCTTCTAAGAGTGAAGATGCTCCCTACAGACCAACATGAGTCCTTCCAAAATCCTTTATCTTCACTAATATGCACCCAACATAGAATTTCTCCAAGCAAAACACACTTAACCATAAAGTTCCTACGATAGAGCTACAAAAAAGGAAGGTGCACCATGTTGGTATAGATAGTAATGTTCATTTCCTTTAAGCCTTTTTTAGTCATTCTATCCTCAGGATTCCTCTCGTTCGGATTTGGTTTCAGTTCATTCATGTACCCCTTCTTTTACTCAAGTGTCACATGCCCACCAGCTTTCGCCTTGGTTCGTCCCCGAACCACATCTTACAGGGAGAGGTATCGCTTTGATACCATTTGTAACGACCCATGCCCAAGATTCATATCAAGATTTGAAATCCAGATTCGACACTTGATGACCCCGGCATTTCCCTACGACATGGTTATGGTACTTCCCACTTTTAAGAGTGAAGACTATCCCCTTGTGCTTAGGCTGACTTCCTTGTTACCTTTTGGGGTATGTGATTTGAAATAAACAACAGTGTTTAGGGACGCGGAGAGGTGCTGGGAGTAGGTTTGGTCATAACTGAAGCCTAACGCCTCTGTTTGGGCGTAGGTTCGGTCATAACTGAAGCCTAACGCCTCTGTTTGGGCGTCAGTCTCGAAGGATCTTTATGGTTACCCATTCGGTTTCGTCACGTGGAATTGGAGCCATTTTTTGTATAGCTAGTTTCTTGCCTCCTTCTATTAGTAGCCTATAATAAATATCAGAAGGGCATAGTTCTTGTAGCCAACTAGTTTTAGTTTGTTTCCATGTTGCATATAGTAACCTCTTAGCTCTATTTAGACTGCTCGTTTGTTTCCTGAACTCGACCAATACGATTTTACTTGCTATTCCAGCATGGTGGCTGCTTTTGGATCTGGGGCCATGTTTTCGTTGGTGAGCGGAATGGGAGGCCCGAATCAGGTGGCAAACGCCGTCACCTCGGGTCTTTTTTTCTCGCTCGTTCAAGGTGGACTCTTCAAGGTATGCATCAATAACAACTGTTCTATTATTCTGATAAATTTCAAGCATTTCAAGCTCGTCCTCGGCTGTTCCTTTGTTCTTATACCAAAATTTGGAACTTGTTTAAGAATCAATGGTGTTTTTCAGTTAGGCGAAAAGTATTCTAAGCCACCTGCGGAAGACGTGTTCTACGCTAAAACCCGAAGCATGTTGAGTAACCTTGGCCTTGCTAGCTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATAGCACATTGCCTCTGCTCACTGATAGGCATGTATATTGAATTCATGTTTTCATACTTATGGTTATAATCAATGCATTGGCTAAGTATGTATACCCTTCTGCTTTGACGTGTGCCAGTGCGCTTAGAGACGTTAAGATCCCCCCGGGACCGAGGCTTTTGATTCTTGATCACATTCAGAGGTTTTAATCGAGCTCTATAACAAAGTTCTTGTTGCTTCCATTGTTCTATGTCGTCTCGTTTATGGCTAACTTTTGATTTCAGGAACGCCGAGCTACGAGAGAGATGAAGCGGGTTGAGTGAGCAGCTTGTCCCAAGAACTCTTTGTAGGTGAACTTGAGGAGGTAGGGAAGTGGTTAGTTCATCTTGAATAGGAAGAATATGTTTGATAAATAGGACGTTTTTGTCGTTTGAATTTGCACCAAATGCACCTTTTGATTTGATTGTTGTGGATGACTGAACCATGGCTTTGTTTATTAATGAATGATGGAACAACTTGGTTTGGTTTGGTTGGCATATTCACTAAAAATTTGTATTGTTAAAAATCACGTTGTGCCTACAAGACAAAGAGAGAGGTGAATGTGGGTGTGGTGCTAAACCACCATAACTCCGACCATCGACTGACTCGTATGAGATCTGTCATATTGGCCGACCTTCAAGGGGTCAAGAGGTCAGTGATTTGAACTTTTGGTGGTTGGGACTCATCTTTGGTCAACACTCACGGTGTTTGACACTATCAAGTTCGATTAATCTTTGGATTTGTTTTTTTAGTCTTTGGTCAGTCTCAAGAAGTCTCATCTTTGGTTAATGCTCGAGGTGGTTGGCACTATCGCACTATCGAGTTCACTATCGAGTTCGACTAACCTTTGGATTTGTTTCTAGG

mRNA sequence

TCAATTTTCAGCGAAACTAAACTGTCGCCGGACGATAGAGGAGGCAACGGAGAAGAAATCAAGGCTCCAATTGGCTTATCATTGATGGAGCAGGGGAAGCAGGGAGTGGTAGTTAAATTGAGCCCTCCACAGAACCCATTGGAGCAGGTTCAGGCTCGTTTCAAGGAACTTGAAAATGGGTTCAGAACATGGTTGGCCAAGCAGTCTCTCCCCGTTGAGGCCGCTGTTGTCACCGCCACCAGCGCCGCACAGGGCGCTGCTATTGGTGGCTTTATGGGCGTTCTCACCAACGACGTTTCTTCGTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCCTCTTTCAAGCAAGCTCAGGCTCTTGCTGGAGGTCCCTTGGTGCAAGCTCGCAACTTCGCCGTGATGACCGGTGTTAATGCAGGCATATCTTCTACTGCTCGTTTGTTTCCTGAACTCGACCAATACGATTTTACTTGCTATTCCAGCATGGTGGCTGCTTTTGGATCTGGGGCCATGTTTTCGTTGGTGAGCGGAATGGGAGGCCCGAATCAGGTGGCAAACGCCGTCACCTCGGGTCTTTTTTTCTCGCTCGTTCAAGGTGGACTCTTCAAGTTAGGCGAAAAGTATTCTAAGCCACCTGCGGAAGACGTGTTCTACGCTAAAACCCGAAGCATGTTGAGTAACCTTGGCCTTGCTAGCTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATAGCACATTGCCTCTGCTCACTGATAGGCATGAACGCCGAGCTACGAGAGAGATGAAGCGGGTTGAGTGAGCAGCTTGTCCCAAGAACTCTTTGTAGGTGAACTTGAGGAGGTAGGGAAGTGGTTAGTTCATCTTGAATAGGAAGAATATGTTTGATAAATAGGACGTTTTTGTCGTTTGAATTTGCACCAAATGCACCTTTTGATTTGATTGTTGTGGATGACTGAACCATGGCTTTGTTTATTAATGAATGATGGAACAACTTGGTTTGGTTTGGTTGGCATATTCACTAAAAATTTGTATTGTTAAAAATCACGTTGTGCCTACAAGACAAAGAGAGAGGTGAATGTGGGTGTGGTGCTAAACCACCATAACTCCGACCATCGACTGACTCGTATGAGATCTGTCATATTGGCCGACCTTCAAGGGGTCAAGAGGTCAGTGATTTGAACTTTTGGTGGTTGGGACTCATCTTTGGTCAACACTCACGGTGTTTGACACTATCAAGTTCGATTAATCTTTGGATTTGTTTTTTTAGTCTTTGGTCAGTCTCAAGAAGTCTCATCTTTGGTTAATGCTCGAGGTGGTTGGCACTATCGCACTATCGAGTTCACTATCGAGTTCGACTAACCTTTGGATTTGTTTCTAGG

Coding sequence (CDS)

ATGGAGCAGGGGAAGCAGGGAGTGGTAGTTAAATTGAGCCCTCCACAGAACCCATTGGAGCAGGTTCAGGCTCGTTTCAAGGAACTTGAAAATGGGTTCAGAACATGGTTGGCCAAGCAGTCTCTCCCCGTTGAGGCCGCTGTTGTCACCGCCACCAGCGCCGCACAGGGCGCTGCTATTGGTGGCTTTATGGGCGTTCTCACCAACGACGTTTCTTCGTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCCTCTTTCAAGCAAGCTCAGGCTCTTGCTGGAGGTCCCTTGGTGCAAGCTCGCAACTTCGCCGTGATGACCGGTGTTAATGCAGGCATATCTTCTACTGCTCGTTTGTTTCCTGAACTCGACCAATACGATTTTACTTGCTATTCCAGCATGGTGGCTGCTTTTGGATCTGGGGCCATGTTTTCGTTGGTGAGCGGAATGGGAGGCCCGAATCAGGTGGCAAACGCCGTCACCTCGGGTCTTTTTTTCTCGCTCGTTCAAGGTGGACTCTTCAAGTTAGGCGAAAAGTATTCTAAGCCACCTGCGGAAGACGTGTTCTACGCTAAAACCCGAAGCATGTTGAGTAACCTTGGCCTTGCTAGCTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATAGCACATTGCCTCTGCTCACTGATAGGCATGAACGCCGAGCTACGAGAGAGATGAAGCGGGTTGAGTGA

Protein sequence

MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAIGGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSTARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKLGEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTDRHERRATREMKRVE

Homology

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BLAST of Carg13987 vs. NCBI nr
Match: KAG7035778.1 (hypothetical protein SDJN02_02576 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 465.7 bits (1197), Expect = 2.4e-127
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60
           MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120
           GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST
Sbjct: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120

Query: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180
           ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL
Sbjct: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180

Query: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTDRHERRATREMKR 240
           GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTDRHERRATREMKR
Sbjct: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTDRHERRATREMKR 240

Query: 241 VE 243
           VE
Sbjct: 241 VE 242

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BLAST of Carg13987 vs. NCBI nr
Match: XP_022957696.1 (uncharacterized protein LOC111459161 [Cucurbita moschata] >XP_023534791.1 uncharacterized protein LOC111796261 [Cucurbita pepo subsp. pepo] >KAG6605816.1 Chloroplastic import inner membrane translocase subunit HP30-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 397.1 bits (1019), Expect = 1.1e-106
Identity = 212/228 (92.98%), Postives = 214/228 (93.86%), Query Frame = 0


Query: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60
           MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120
           GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISS 
Sbjct: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180
            +     +       SSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL
Sbjct: 121 MKRLRGKEDVQ----SSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180

Query: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
           GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD
Sbjct: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 224

[Close]

BLAST of Carg13987 vs. NCBI nr
Match: XP_022996116.1 (uncharacterized protein LOC111491434 [Cucurbita maxima])

HSP 1 Score: 393.3 bits (1009), Expect = 1.5e-105
Identity = 210/228 (92.11%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60
           MEQG QGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI
Sbjct: 1   MEQGNQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120
           GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISS 
Sbjct: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180
            +     +       SSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL
Sbjct: 121 MKRLRGKEDVQ----SSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180

Query: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
           GEKYSKPPAEDVFYAKTRSMLSNLGL SYEKNFKKGLLTDSTLPLLTD
Sbjct: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLQSYEKNFKKGLLTDSTLPLLTD 224

[Close]

BLAST of Carg13987 vs. NCBI nr
Match: KAA0042522.1 (mitochondrial import inner membrane translocase subunit TIM22-like [Cucumis melo var. makuwa])

HSP 1 Score: 386.0 bits (990), Expect = 2.5e-103
Identity = 202/230 (87.83%), Postives = 212/230 (92.17%), Query Frame = 0


Query: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60
           MEQGKQGVVVKL+PPQNPLEQ+QARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLTPPQNPLEQIQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120
           GGFMG LTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISS 
Sbjct: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180
            +     +       SSMVAAFGSGAMFSLVSGMGGPNQ ANAVTSGLFF+LVQGGLFKL
Sbjct: 121 MKRLRGKEDVQ----SSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKL 180

Query: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTDRH 231
           GEK+S+PP EDV+YAKTRSML+NLGL SYEKNFKKGLLTD+TLPLLTDRH
Sbjct: 181 GEKFSQPPVEDVYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDRH 226

[Close]

BLAST of Carg13987 vs. NCBI nr
Match: XP_008437651.1 (PREDICTED: uncharacterized protein LOC103482996 [Cucumis melo] >TYK05925.1 mitochondrial import inner membrane translocase subunit TIM22-like [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 6.1e-102
Identity = 200/228 (87.72%), Postives = 210/228 (92.11%), Query Frame = 0


Query: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60
           MEQGKQGVVVKL+PPQNPLEQ+QARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLTPPQNPLEQIQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120
           GGFMG LTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISS 
Sbjct: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180
            +     +       SSMVAAFGSGAMFSLVSGMGGPNQ ANAVTSGLFF+LVQGGLFKL
Sbjct: 121 MKRLRGKEDVQ----SSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKL 180

Query: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
           GEK+S+PP EDV+YAKTRSML+NLGL SYEKNFKKGLLTD+TLPLLTD
Sbjct: 181 GEKFSQPPVEDVYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 224

[Close]

BLAST of Carg13987 vs. ExPASy Swiss-Prot
Match: Q9FLT9 (Chloroplastic import inner membrane translocase subunit HP30-2 OS=Arabidopsis thaliana OX=3702 GN=HP30-2 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.3e-58
Identity = 124/221 (56.11%), Postives = 154/221 (69.68%), Query Frame = 0


Query: 8   VVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAIGGFMGVL 67
           V+  +   QNP++Q Q +FKE+E GF++WL+KQ LPVEAAVVTA    QGA IGG MG L
Sbjct: 16  VMSLMKDQQNPIQQFQVKFKEIETGFKSWLSKQKLPVEAAVVTAMGGVQGAFIGGLMGTL 75

Query: 68  TNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSTARLFPEL 127
           + ++      PQAG++PQAMAS KQ QAL GGPLVQARNFA +TGVNAGI+   +     
Sbjct: 76  SPEM------PQAGIDPQAMASLKQTQALVGGPLVQARNFAAITGVNAGIACVMKRIRGK 135

Query: 128 DQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKLGEKYSKP 187
           +  +    S++VAAFGSG  +SLVS  G   Q  NA+T+   F++ QG  FKLGE++SKP
Sbjct: 136 EDLE----SAVVAAFGSGVAYSLVSA-GLQGQPMNAITTAAGFAVFQGVFFKLGERFSKP 195

Query: 188 PAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
             ED +Y + RSML  LGL  YEKNFKKGLL D TLPLLTD
Sbjct: 196 SVEDPYYTRGRSMLLKLGLEKYEKNFKKGLLADPTLPLLTD 225

[Close]

BLAST of Carg13987 vs. ExPASy Swiss-Prot
Match: Q9SCK3 (Chloroplastic import inner membrane translocase subunit HP30-1 OS=Arabidopsis thaliana OX=3702 GN=HP30-1 PE=1 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.8e-56
Identity = 121/213 (56.81%), Postives = 152/213 (71.36%), Query Frame = 0


Query: 16  QNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAIGGFMGVLTNDVSSSL 75
           QNP++Q Q +FKE+E  F+TWL+KQS+PVEAAVV+  S  QGA IGG MG L+ ++    
Sbjct: 29  QNPIQQFQVKFKEVETNFKTWLSKQSIPVEAAVVSTMSGVQGAFIGGLMGTLSPEM---- 88

Query: 76  PTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSTARLFPELDQYDFTCY 135
             PQAG++PQA+AS KQAQAL GGP VQARNFA +TGVNAGI+S  +     +  +    
Sbjct: 89  --PQAGVDPQAIASMKQAQALVGGPWVQARNFAAITGVNAGIASVMKRIRGKEDIE---- 148

Query: 136 SSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKLGEKYSKPPAEDVFYA 195
           S++VAA GSG  +SLVS  G   Q  NA+T+   F++ QG  FKLGE++SKP  ED F+ 
Sbjct: 149 SAVVAALGSGFAYSLVS-QGLQGQPMNAITTAAGFAVFQGVFFKLGERFSKPSTEDPFFT 208

Query: 196 KTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
           + R+ML  LGL  YEKNFKKGLLTD TLPLLTD
Sbjct: 209 RGRTMLVKLGLEKYEKNFKKGLLTDPTLPLLTD 230

[Close]

BLAST of Carg13987 vs. ExPASy TrEMBL
Match: A0A6J1GZY7 (uncharacterized protein LOC111459161 OS=Cucurbita moschata OX=3662 GN=LOC111459161 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 5.2e-107
Identity = 212/228 (92.98%), Postives = 214/228 (93.86%), Query Frame = 0


Query: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60
           MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120
           GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISS 
Sbjct: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180
            +     +       SSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL
Sbjct: 121 MKRLRGKEDVQ----SSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180

Query: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
           GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD
Sbjct: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 224

[Close]

BLAST of Carg13987 vs. ExPASy TrEMBL
Match: A0A6J1K3T6 (uncharacterized protein LOC111491434 OS=Cucurbita maxima OX=3661 GN=LOC111491434 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 7.5e-106
Identity = 210/228 (92.11%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60
           MEQG QGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI
Sbjct: 1   MEQGNQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120
           GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISS 
Sbjct: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180
            +     +       SSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL
Sbjct: 121 MKRLRGKEDVQ----SSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180

Query: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
           GEKYSKPPAEDVFYAKTRSMLSNLGL SYEKNFKKGLLTDSTLPLLTD
Sbjct: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLQSYEKNFKKGLLTDSTLPLLTD 224

[Close]

BLAST of Carg13987 vs. ExPASy TrEMBL
Match: A0A5A7TGI2 (Mitochondrial import inner membrane translocase subunit TIM22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00150 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.2e-103
Identity = 202/230 (87.83%), Postives = 212/230 (92.17%), Query Frame = 0


Query: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60
           MEQGKQGVVVKL+PPQNPLEQ+QARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLTPPQNPLEQIQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120
           GGFMG LTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISS 
Sbjct: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180
            +     +       SSMVAAFGSGAMFSLVSGMGGPNQ ANAVTSGLFF+LVQGGLFKL
Sbjct: 121 MKRLRGKEDVQ----SSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKL 180

Query: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTDRH 231
           GEK+S+PP EDV+YAKTRSML+NLGL SYEKNFKKGLLTD+TLPLLTDRH
Sbjct: 181 GEKFSQPPVEDVYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDRH 226

[Close]

BLAST of Carg13987 vs. ExPASy TrEMBL
Match: A0A5D3C3H2 (Mitochondrial import inner membrane translocase subunit TIM22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00170 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.9e-102
Identity = 200/228 (87.72%), Postives = 210/228 (92.11%), Query Frame = 0


Query: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60
           MEQGKQGVVVKL+PPQNPLEQ+QARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLTPPQNPLEQIQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120
           GGFMG LTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISS 
Sbjct: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180
            +     +       SSMVAAFGSGAMFSLVSGMGGPNQ ANAVTSGLFF+LVQGGLFKL
Sbjct: 121 MKRLRGKEDVQ----SSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKL 180

Query: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
           GEK+S+PP EDV+YAKTRSML+NLGL SYEKNFKKGLLTD+TLPLLTD
Sbjct: 181 GEKFSQPPVEDVYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 224

[Close]

BLAST of Carg13987 vs. ExPASy TrEMBL
Match: A0A1S3AV59 (uncharacterized protein LOC103482996 OS=Cucumis melo OX=3656 GN=LOC103482996 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.9e-102
Identity = 200/228 (87.72%), Postives = 210/228 (92.11%), Query Frame = 0


Query: 1   MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60
           MEQGKQGVVVKL+PPQNPLEQ+QARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI
Sbjct: 1   MEQGKQGVVVKLTPPQNPLEQIQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAI 60

Query: 61  GGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISST 120
           GGFMG LTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISS 
Sbjct: 61  GGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSV 120

Query: 121 ARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKL 180
            +     +       SSMVAAFGSGAMFSLVSGMGGPNQ ANAVTSGLFF+LVQGGLFKL
Sbjct: 121 MKRLRGKEDVQ----SSMVAAFGSGAMFSLVSGMGGPNQAANAVTSGLFFALVQGGLFKL 180

Query: 181 GEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
           GEK+S+PP EDV+YAKTRSML+NLGL SYEKNFKKGLLTD+TLPLLTD
Sbjct: 181 GEKFSQPPVEDVYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTD 224

[Close]

BLAST of Carg13987 vs. TAIR 10
Match: AT5G24650.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 226.5 bits (576), Expect = 2.3e-59
Identity = 124/221 (56.11%), Postives = 154/221 (69.68%), Query Frame = 0


Query: 8   VVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAIGGFMGVL 67
           V+  +   QNP++Q Q +FKE+E GF++WL+KQ LPVEAAVVTA    QGA IGG MG L
Sbjct: 16  VMSLMKDQQNPIQQFQVKFKEIETGFKSWLSKQKLPVEAAVVTAMGGVQGAFIGGLMGTL 75

Query: 68  TNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSTARLFPEL 127
           + ++      PQAG++PQAMAS KQ QAL GGPLVQARNFA +TGVNAGI+   +     
Sbjct: 76  SPEM------PQAGIDPQAMASLKQTQALVGGPLVQARNFAAITGVNAGIACVMKRIRGK 135

Query: 128 DQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKLGEKYSKP 187
           +  +    S++VAAFGSG  +SLVS  G   Q  NA+T+   F++ QG  FKLGE++SKP
Sbjct: 136 EDLE----SAVVAAFGSGVAYSLVSA-GLQGQPMNAITTAAGFAVFQGVFFKLGERFSKP 195

Query: 188 PAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
             ED +Y + RSML  LGL  YEKNFKKGLL D TLPLLTD
Sbjct: 196 SVEDPYYTRGRSMLLKLGLEKYEKNFKKGLLADPTLPLLTD 225

[Close]

BLAST of Carg13987 vs. TAIR 10
Match: AT3G49560.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein )

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-57
Identity = 121/213 (56.81%), Postives = 152/213 (71.36%), Query Frame = 0


Query: 16  QNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAIGGFMGVLTNDVSSSL 75
           QNP++Q Q +FKE+E  F+TWL+KQS+PVEAAVV+  S  QGA IGG MG L+ ++    
Sbjct: 29  QNPIQQFQVKFKEVETNFKTWLSKQSIPVEAAVVSTMSGVQGAFIGGLMGTLSPEM---- 88

Query: 76  PTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSTARLFPELDQYDFTCY 135
             PQAG++PQA+AS KQAQAL GGP VQARNFA +TGVNAGI+S  +     +  +    
Sbjct: 89  --PQAGVDPQAIASMKQAQALVGGPWVQARNFAAITGVNAGIASVMKRIRGKEDIE---- 148

Query: 136 SSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKLGEKYSKPPAEDVFYA 195
           S++VAA GSG  +SLVS  G   Q  NA+T+   F++ QG  FKLGE++SKP  ED F+ 
Sbjct: 149 SAVVAALGSGFAYSLVS-QGLQGQPMNAITTAAGFAVFQGVFFKLGERFSKPSTEDPFFT 208

Query: 196 KTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTD 229
           + R+ML  LGL  YEKNFKKGLLTD TLPLLTD
Sbjct: 209 RGRTMLVKLGLEKYEKNFKKGLLTDPTLPLLTD 230

The following BLAST results are available for this feature:

BLAST of Carg13987 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035778.1	2.4e-127	100.00	hypothetical protein SDJN02_02576 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022957696.1	1.1e-106	92.98	uncharacterized protein LOC111459161 [Cucurbita moschata] >XP_023534791.1 unchar...	[more]
XP_022996116.1	1.5e-105	92.11	uncharacterized protein LOC111491434 [Cucurbita maxima]	[more]
KAA0042522.1	2.5e-103	87.83	mitochondrial import inner membrane translocase subunit TIM22-like [Cucumis melo...	[more]
XP_008437651.1	6.1e-102	87.72	PREDICTED: uncharacterized protein LOC103482996 [Cucumis melo] >TYK05925.1 mitoc...	[more]

BLAST of Carg13987 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLT9	3.3e-58	56.11	Chloroplastic import inner membrane translocase subunit HP30-2 OS=Arabidopsis th...	[more]
Q9SCK3	1.8e-56	56.81	Chloroplastic import inner membrane translocase subunit HP30-1 OS=Arabidopsis th...	[more]

BLAST of Carg13987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZY7	5.2e-107	92.98	uncharacterized protein LOC111459161 OS=Cucurbita moschata OX=3662 GN=LOC1114591...	[more]
A0A6J1K3T6	7.5e-106	92.11	uncharacterized protein LOC111491434 OS=Cucurbita maxima OX=3661 GN=LOC111491434...	[more]
A0A5A7TGI2	1.2e-103	87.83	Mitochondrial import inner membrane translocase subunit TIM22-like OS=Cucumis me...	[more]
A0A5D3C3H2	2.9e-102	87.72	Mitochondrial import inner membrane translocase subunit TIM22-like OS=Cucumis me...	[more]
A0A1S3AV59	2.9e-102	87.72	uncharacterized protein LOC103482996 OS=Cucumis melo OX=3656 GN=LOC103482996 PE=...	[more]

BLAST of Carg13987 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24650.1	2.3e-59	56.11	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]
AT3G49560.1	1.3e-57	56.81	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14110:SF6	CHLOROPLASTIC IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT HP30-2	coord: 1..230
None	No IPR available	CDD	cd09487	SAM_superfamily	coord: 199..228 e-value: 8.05289E-4 score: 34.9077
IPR039175	Mitochondrial import inner membrane translocase subunit TIM22	PANTHER	PTHR14110	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22	coord: 1..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13987-RA	Carg13987-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein insertion into mitochondrial inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0042721	TIM22 mitochondrial import inner membrane insertion complex