Carg13904 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13904
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 4571052 .. 4575796 (+)
RNA-Seq ExpressionCarg13904
SyntenyCarg13904
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCAGAGGAAGAGGTCAACAACACACCAATAAAGCCAGACAGACAAGGGCACTGGTTTGAGGTGGACAATCCAATCCTCAATATCCGTCGGTGATTCAAAGAAATTTCAAACCACCAAAGTAAATTTCATTAAAGCATCACCTTTTTTTAGATTTTCCCACCACGTCCCTAACCTGTCTTGCCTTAATGCTTTCATTTGACCAATACACTTTCTATGTAATTCAATTTTGATGAAAGGGTAAGTTTGGTATTAGGAATCACGAATCACTATAATGATATGATATTGTCACTTTGAGTATAAGTTCTTATGATTTTGCTTTTGGTTTCTCTGAAAGACCTCATACCAATGAAGATAGTATTCTTTACTTATAAACCCATTATCTTTTCCTCTGGGACCCTTGTTTCCAACATTTTTCAACAATCCTCCCCTCGAACAAAATGCACCATAGAGTCTTCCTTAAGGCTTATGGAGCGTTCGAACAATCTCCCCTTAATCGAGGTTTGACTCCTTCTCTGGAGCCCTCGAACAAAATACACTTTTTATTTGACGCTTGAGTCATTTTTTACTACACGTTCGAGACTTACAATCTTTGTTTGACATTTGAGGATTCTATTAACATAGTTACGTTAAAGACATGCCTCTAATACCATGTTAGGAATCACGACCTCCTTTGTCCACTTTGGGCATAAGCTCTCATAGTTTTGCTTTTGGTTTTCCCAAAAAGCCTCATACCAATAAAAATAGTATTTCTTACCTATAAACCCATGATTTAGCGAAGGTATGACTACCTACACATTTGCCCTTTTTTTTTCCACAAAAAGTTGATAGCTGGAAAGTAGTTCAAAAATAAAATAGAAGTTCATTGACAGCCCTGACTTAAATAGTATTTTCCCCAACTATTAAATTAAAATCATATTGCTTAGGGGGGAAATGGAAAAAGAAAGGGCAACCAGTCCAGTTTAGCATGCAATTATTGGGGTTGTCATAATTAGACTTGGTAAGAAAGTGTTAAAGAATGGGGCCTCTTGACTCTTTGAGGTGTGCATTTCAAAGCCCTTTTTCCTTTTGTTTCATCACCCTTATCCCCTGTGAAATGAAAGGAACGTTTTAGCTCAACGCTTACAGAATTATTGTCCCCTAATCTTTTAGATTTATTCAATTGAATTCAACTGAAAGAACTTTCCATTTTTAAAGAGTAATGCATTTTAGTTTACACATAAATTGAGGTTTGTCTAAAAAGAGCGATGCATTTAATGCATCCATGAAGGCTACAGCAGTATCATTTAAGCAGTGGACCTATTGTTTGCTAAGATCAAGCTTGCTCTTTCTGTTCTTGTTGTTCTTGCCTCTTGTGTGTGGGACATCTATATTTATGGTGTTAATTTATGAGTCATATGTTCTATAATTCTGTTATTTGATCAATTTTTTTGGTTTATTTTCCTTGTGAGCTTAAATGTTGCAAGTTCAAGTAGATCGTCCAATTCATCAGCTTCTATATAAAATCTAAGTTAGCCATCAACCAAGGAGATATTTGTCGCTTCAAAAATGGAAAAAAGTAAATATTTCAGAAGAGAAGGGAATGGGAGTGTACAAACCTGTGTCAAAACAGGCAACATTCACCAACATTTTCATGTGCCAGAAGATAAGTCCCGTAATGCCTTTTAAGCGTGTTTCCAGCACCCTGCAGGAGAACTAGTTGTCATTTTATATCACCTGAGCTATCTTTTACTCTTCTTATGAGCATCAAGAAACAACGTTCCCATTATTTGTTTATGCATATACAGCATTCTAGATATTCAAGAATAAAAAGTTACACTAGGATTGTGTTGTTAGACATGAAAGTGTTGAGAATTGTTGGGAGAGGTCCCATATCGGCTAATTAAGGGTTGATCATGGGCTTATAAGTAAGGAATACATCTCTATTGGTATGAGGCCTTTTAGGAGAACCAAAAGCAAAGCCATGAGAGCTTCTGTTCAAAGTGGACAATATCATACCATCGTGGAGGTTCGTGATTCCTAACATGGTATCAGAGTCATGCCCTTCAAAGAAGTTGTGAGCCTCGAAGGTGTAGTCAAAAGTGACTCAAGCATCGAGCAAATGGTGTACTTTGTTCGATGGCTCTAGAGAAGGAGTCGAGTCTCAATTGAGGGTAGGCTATTCGAGGGCTCCATAGGCCTCAAGGGAAGCTCTACGATGTACTTTATTCGAGAGGAGGATTGTTGAGGAGGGTTGGGAGAGGAGTCTCACATCAGCTAAGGGAATGATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGGTCTTTTGGAGAAACCAAAAGTAAGGCCAGAGCTTATGCTCAAAGTGGACAATATCATACTATTGTGAAGGTTCGTGATTTCTAACAGAAAGCCGTGCGGACATTTTATAGGTCATGTTATGGTTGCACGTCATTGAGTTAATGCCATTTCCAACACAAAACCCACCTCTTGAAACCACCTGATCAGCAGCATCCATTCTGGAATAGTCCAACTAGTGTCCAGTACACTCTAAATCCATGATTCTAACTGAGAGAAAGCGGCTTACCTCCCTGTACAGGCTGTGAAGGAAACAAGTATTTTGGCACAACTTTGGGTTCAAGAAGATTAGACAAATGCTGCAGCCATAAAATTAAGTAGAAATCAATCTAAATTTTCAGGTCGAATAGATGAACTATCCCATGCTTCAGATAAGTTTCAAAATCTTTATCAACTCAATTTACACGTAATCGTAGAGATATATATGGTAGATATTTATATATAATAGGTGGTTATATTTGTTAAACCTATAGTAAATTGAAACTATATATATCCATGAGACAATAGTTTGAAGATGTACTTTCTCTATTTTCTATATTCTATTAGTACATACATGAAATCATCAATATAAACCTTTTAACCAATATTCCTCTTTGTATTTCTCTCTTGTTCTTTATGTTCATCTAGATCAAGTGTGTGTTGGTGTGCGATCCTAACATAATCTCCATTGTCATTGTCATACAAAATGGAGCAACTCTGAACAATAGCTTTATTTGTTCATGAAATTGTGGAAAGGGATATCTCTGATGATCCTTTGGATAATCCTCTTACTTTTATCTTCAGGAACACTCCAACAGGGGATTGCAATACTAGTATATCTAGCAGTATTTTTATTTGGTGTTTGTTATTTCAGTAAATTGCTTGAATAAAATAGTGCATAAGCATCTTGGTTTGCTCTCTTTCAAGGTGCAGAAACAGGAGGAGGCAGTGGTTCCTCTTGGGACTTAGCTGAATGCATCTTCTTTTGCCCTGTTTCAAAGAGCCAGTATCAAAAACTTATTCTTCAAATCCCATCTCAATTTATACCATTCATAGCTAATGTGACCATACATGGACTGATTCACATGCGCCAAGATTCTACAAATTAGTGCATATGTATGGAACACTTGGCAAGAGGTGGTTGGTCTGTCACATTTAGATCTCGCAGAAAAGTTGCAGGCTAAGGTACACTTCTATGCCATTGGTTACTCGACCAGACAATATATTTACATACGCACACAAGTACACAAGCTTCTTCTGATGATATTATCAACGTGAGCTGTAACCCAGCCAGCAATAATGGAAGTTACATTGTGAGATCTCACATCGGTTGGAGAGTGGAGTCGTTCTTTATAAGGGTGTGGAAACCTCTACCTAGTATACGCGTTTTAAAAACTTTGAGGAAAGCTCGAAAGAGAAAGCCCAAGAAGGACAATATCTGTTAATGGTGAGTTTGGGCTATTGTAAATAGACATCAAGCAGTGTACCAGAGAGGACATTGAGCTCTAAAGGAGGGTGGATATCGTGCGGTGTGCCAGGAAGGACATTGGGCCCCAAGGGGGTGGATTGTGAGATTTCACATCGATTGGAGAGAGAAATGAGTGCCAACGAGAACGCTAAGCCCCAAAGGGAGATGAATTGTGAGATTCAACATCAATTAGAAAGAGGAATGAGTGCCAACGAGAACACTGGCTCCTAAAGGAGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTCTTTATGAGGGTGTGAAAACTTCTTCTTAGCAGACGCGTTTTAAAAACCTTAAATAAAAAACTCAAAGAGGACAATATCTGCTAGCGGTGGGCTTAAGTGGTTACAGTGTACTCCGGTACTCCTCTCCTCCCTTTTAAAGATAGACGTATCCCACATCTATTGCACTAGAAAACGATGACCCACAAACAGATAAACCAGATGAAATTGTCCTAAGGTAATCCAGTCGAAACCCAGACCATGTTACTGAACCATGCAATAAGTTTTAAGCATATGTTAAGATCAACTTCTCCGGTTCATGCATTCATAAACATTTGACTTCATTTAGCTCAGCTATTGTAGCAACCCTTCATAGCTTATCTCTTTCATATGTTGTTTCAGCCTTACATAATCATCAGTTCATCACAACCAAAAATTAAATTATCCAAAAGAGCTTCAAATCTTACACCCTTTTCCTTTTCTGATACAACATCGATCTGGCAATGAATACAAAGACAACAAAGATCCAACTTCTCTTGTTTTCTTTTATTGCTAAATGCTAATGTCCATTTTAATTTACATTTTCTGAAACATGAAGCAGGTGGAAGAGACAATAAGACTATGAAACAGGAAGGCGGTTATGTTGGCGCTGGAGATCCTCTAAGAGAAGGTGAGTTTCAATTGGTTCAT

mRNA sequence

ATGAAGTCAGAGGAAGAGGTCAACAACACACCAATAAAGCCAGACAGACAAGGGCACTGGTTTGAGGTGGACAATCCAATCCTCAATATCCGTCGGAACACTCCAACAGGGGATTGCAATACTAGTGGAAGAGACAATAAGACTATGAAACAGGAAGGCGGTTATGTTGGCGCTGGAGATCCTCTAAGAGAAGGTGAGTTTCAATTGGTTCAT

Coding sequence (CDS)

ATGAAGTCAGAGGAAGAGGTCAACAACACACCAATAAAGCCAGACAGACAAGGGCACTGGTTTGAGGTGGACAATCCAATCCTCAATATCCGTCGGAACACTCCAACAGGGGATTGCAATACTAGTGGAAGAGACAATAAGACTATGAAACAGGAAGGCGGTTATGTTGGCGCTGGAGATCCTCTAAGAGAAGGTGAGTTTCAATTGGTTCAT

Protein sequence

MKSEEEVNNTPIKPDRQGHWFEVDNPILNIRRNTPTGDCNTSGRDNKTMKQEGGYVGAGDPLREGEFQLVH
Homology
[Close]
BLAST of Carg13904 vs. NCBI nr
Match: KAG7025924.1 (hypothetical protein SDJN02_12422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 2.7e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MKSEEEVNNTPIKPDRQGHWFEVDNPILNIRRNTPTGDCNTSGRDNKTMKQEGGYVGAGD 60
          MKSEEEVNNTPIKPDRQGHWFEVDNPILNIRRNTPTGDCNTSGRDNKTMKQEGGYVGAGD
Sbjct: 1  MKSEEEVNNTPIKPDRQGHWFEVDNPILNIRRNTPTGDCNTSGRDNKTMKQEGGYVGAGD 60

Query: 61 PLREGEFQLVH 72
          PLREGEFQLVH
Sbjct: 61 PLREGEFQLVH 71

The following BLAST results are available for this feature:
BLAST of Carg13904 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025924.12.7e-34100.00hypothetical protein SDJN02_12422, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg13904 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13904 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13904 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13904-RACarg13904-RAmRNA