Carg13446 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13446
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	E3 ubiquitin ligase BIG BROTHER
Location	Carg_Chr08: 2872674 .. 2875079 (-)
RNA-Seq Expression	Carg13446
Synteny	Carg13446

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAGGATAGACAAATGGAGCTACACTACCTCGATGGCGGCGGCTTCCCTTACACAGTTACTGAGAGTTTCATGGATTTCTTTGAAGGGCTTCACCAACATCAAGTGCCTGCTTATGCCAATGCCGTGCCATTGCTCGATCAGGTAACGAAGCGACAATCGATGAAATTTTTCGATGAACTCTAGTGTTCTTAGTTGAGAGAGTGATTAGTATTGGAAATGTATGGTGATTTGTTTCTTAGGGGAATGCATATTGGTCAATGAATATGCAATGTTACAAATTTGGAGTATCCGATCACGGGAACACGTATTACGACCCTTTGGAGGAAAGTCGACATTTGCCTCCTTCGGTTGATGTTGGTGAAAGGGAATGGGAGTATCCTTCAACGGTGAATGTCGATGTTCCTGAACCGACATATGCACCATCGGTCGAGGAGGATGTTGTAGATACTCATTCTATGCCAGAAGAATGTAAGCGTTGATCGTTTTGATATGATACCGAGTCCGTTTGTTTCGTGACCAAAATGTCGAGTTGAATTGTCGAAAATCGGCATCTTTTGTTTTGTAGGTGATATAAGTCATCAGGAGGAGACCAGTACTTCTCAAGTATGATGCTTTCTTCTTGATATGCAATATGCCTATTTTTTCTCTTAGGACTATCATCTACTTAATGGCTAATCAAAAAGTTGTTCGGGATCGGTTTACGTTCTTCGCTATTATCATCAAAGGTTTGAAACTCATCGAATCCATCTTCTTTTGTTCGTCTCTTTAGGCTATATGGCAAGACGAGATTGATCCTGACCACATGACCTATGAGGTAAGCTTTGTACTATAACTGCGAGATTCCACATTGGTTGGAGAGGGGAACGAAGCATTCCTTACAAGGGTATGGAAACCTCTCCCTAATAGACACGTTTTAAACTCGTGAGACTGATGGTGATACGTAACGGGCCAAAACGGACAATATCTGTAGCGGTGGACTTGGGCTGTTACAAATGATATTAGAGCCATACATCAGACGGTGTTCCTGCAAGGACGCTGGGCCATTAAAGGGGGTGGATTGTGAGATCCCATATCGGTGGGAGAGGGGAATGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAATAGACGTGTTTTAAAACCATGAGACTGATGACGATACGTAATGGGCCAAAATGGACAATATATGCTAGTGGTGGGCTTGAGCTGTTACAATAACGTTTAGAAATTGAACTAGTTTTATAACACGTTTTAGATGTCTGTAGATTCGTAATCGAGTGGCACATAGAAGTCGGGGTTATTGTACGCTCGAAACCGATGTTTTACCGAACCTGTTTTGCTTTAAAGTGAAGGTTTTTTAGGCTCAATTATCAACAAGACACTATTTTCTTACGGCCGTAGGACTATGGTTGGCTGTCTTATAAATGGGAACCATGGAAGCTTACTATATAACAAAGAAAAGTACAATGGAACTGTGTTTAGCCATGACTGAGCCATGACTGTGGATTATCTTACATGGTTTTACAGGAACTGTTGGACTTGGGTGAATCGGTTGGAACCGAAAGTCGGGGTCTTTCCGAAGAACAAATAAGCTTGCTTCCGACTGCACGATGCAAGTTAACGAGCTTTTTCTCGAGAAAAAAGCCAGATGAAAGGTATGGTTTCGATGTTTGCTAGTTTGCATTACTTGGAGGATATAGGAACTTTCCTGTCATGAGAGCTTAGAAGGACCTATTGGAAAACGGTTTTTAAAATGATGCTTGTTTCGGATAATTTTTATTTTGAAGTCCAATGGACCTGTGAGATCCTATATCAGTTGGAGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCACTCACTAGCAGACACATTTTAAAAACCTCGAAAGAAAGCCTAAAAAGGACAATATTTGCTGGCGATGAACATGGGTCGTTACAGGGCCTATTTTGTCCCTCACACTATGCAAGTTATAACACATTCTGTTCGGTTTTTCGGGTTTTTGTATATCCATGTCAATTTGCTAGCTATAGATCACGTTCTTCAAGTCGTCTTAAGTTGCTAGCTGGGTATAGATCCCCGTACCTTCTCGGTACGATATAATTATACTTATTTTGTTTTGCCAACAGATGTGTGATCTGCCAAATGAGGTACAAGAGAGGGGAGAAGCAAATAAAATTACCTTGCAAGCATTTTTACCACAACAAATGCATAACCAAATGGCTGACCATCAACAAAGTTGGTTTAATTTCATTGACTTTCTTTCTCATGTCTTTATACTTCCCACCATTTCGGTTCTAACTCGTTCGTGTCGATCAGATTTGTCCAATCTGCAACATCGAGGTGTTCGGAGACGAAAGCACGGATGCGTCGGGCGGGCAGTGATAACGGACA

mRNA sequence

ATGAATGAGGATAGACAAATGGAGCTACACTACCTCGATGGCGGCGGCTTCCCTTACACAGTTACTGAGAGTTTCATGGATTTCTTTGAAGGGCTTCACCAACATCAAGTGCCTGCTTATGCCAATGCCGTGCCATTGCTCGATCAGGGGAATGCATATTGGTCAATGAATATGCAATGTTACAAATTTGGAGTATCCGATCACGGGAACACGTATTACGACCCTTTGGAGGAAAGTCGACATTTGCCTCCTTCGGTTGATGTTGGTGAAAGGGAATGGGAGTATCCTTCAACGGTGAATGTCGATGTTCCTGAACCGACATATGCACCATCGGTCGAGGAGGATGTTGTAGATACTCATTCTATGCCAGAAGAATGTGATATAAGTCATCAGGAGGAGACCAGTACTTCTCAAGAACTGTTGGACTTGGGTGAATCGGTTGGAACCGAAAGTCGGGGTCTTTCCGAAGAACAAATAAGCTTGCTTCCGACTGCACGATGCAAGTTAACGAGCTTTTTCTCGAGAAAAAAGCCAGATGAAAGATGTGTGATCTGCCAAATGAGGTACAAGAGAGGGGAGAAGCAAATAAAATTACCTTGCAAGCATTTTTACCACAACAAATGCATAACCAAATGGCTGACCATCAACAAAATTTGTCCAATCTGCAACATCGAGGTGTTCGGAGACGAAAGCACGGATGCGTCGGGCGGGCAGTGATAACGGACA

Coding sequence (CDS)

ATGAATGAGGATAGACAAATGGAGCTACACTACCTCGATGGCGGCGGCTTCCCTTACACAGTTACTGAGAGTTTCATGGATTTCTTTGAAGGGCTTCACCAACATCAAGTGCCTGCTTATGCCAATGCCGTGCCATTGCTCGATCAGGGGAATGCATATTGGTCAATGAATATGCAATGTTACAAATTTGGAGTATCCGATCACGGGAACACGTATTACGACCCTTTGGAGGAAAGTCGACATTTGCCTCCTTCGGTTGATGTTGGTGAAAGGGAATGGGAGTATCCTTCAACGGTGAATGTCGATGTTCCTGAACCGACATATGCACCATCGGTCGAGGAGGATGTTGTAGATACTCATTCTATGCCAGAAGAATGTGATATAAGTCATCAGGAGGAGACCAGTACTTCTCAAGAACTGTTGGACTTGGGTGAATCGGTTGGAACCGAAAGTCGGGGTCTTTCCGAAGAACAAATAAGCTTGCTTCCGACTGCACGATGCAAGTTAACGAGCTTTTTCTCGAGAAAAAAGCCAGATGAAAGATGTGTGATCTGCCAAATGAGGTACAAGAGAGGGGAGAAGCAAATAAAATTACCTTGCAAGCATTTTTACCACAACAAATGCATAACCAAATGGCTGACCATCAACAAAATTTGTCCAATCTGCAACATCGAGGTGTTCGGAGACGAAAGCACGGATGCGTCGGGCGGGCAGTGA

Protein sequence

MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQCYKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTHSMPEECDISHQEETSTSQELLDLGESVGTESRGLSEEQISLLPTARCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTDASGGQ

Homology

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BLAST of Carg13446 vs. NCBI nr
Match: KAG7025656.1 (E3 ubiquitin ligase BIG BROTHER, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 503.1 bits (1294), Expect = 1.4e-138
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60
           MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC
Sbjct: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60

Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120
           YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH
Sbjct: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120

Query: 121 SMPEECDISHQEETSTSQELLDLGESVGTESRGLSEEQISLLPTARCKLTSFFSRKKPDE 180
           SMPEECDISHQEETSTSQELLDLGESVGTESRGLSEEQISLLPTARCKLTSFFSRKKPDE
Sbjct: 121 SMPEECDISHQEETSTSQELLDLGESVGTESRGLSEEQISLLPTARCKLTSFFSRKKPDE 180

Query: 181 RCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTDASGGQ 239
           RCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTDASGGQ
Sbjct: 181 RCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEVFGDESTDASGGQ 238

[Close]

BLAST of Carg13446 vs. NCBI nr
Match: XP_022959719.1 (E3 ubiquitin ligase BIG BROTHER [Cucurbita moschata] >XP_022959720.1 E3 ubiquitin ligase BIG BROTHER [Cucurbita moschata])

HSP 1 Score: 492.3 bits (1266), Expect = 2.4e-135
Identity = 237/253 (93.68%), Postives = 238/253 (94.07%), Query Frame = 0


Query: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60
           MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPL+DQGNAYWSMNMQC
Sbjct: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLIDQGNAYWSMNMQC 60

Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120
           YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH
Sbjct: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120

Query: 121 SMPEECDISHQEETSTSQ---------------ELLDLGESVGTESRGLSEEQISLLPTA 180
           SMPEECDISHQEETSTSQ               ELLDLGESVGTESRGLSEEQISLLPTA
Sbjct: 121 SMPEECDISHQEETSTSQAIWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPTA 180

Query: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 239
           RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE
Sbjct: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 240

[Close]

BLAST of Carg13446 vs. NCBI nr
Match: XP_023513892.1 (E3 ubiquitin ligase BIG BROTHER [Cucurbita pepo subsp. pepo] >XP_023513893.1 E3 ubiquitin ligase BIG BROTHER [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491.5 bits (1264), Expect = 4.1e-135
Identity = 237/253 (93.68%), Postives = 237/253 (93.68%), Query Frame = 0


Query: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60
           MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC
Sbjct: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60

Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120
           YKFG SDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH
Sbjct: 61  YKFGASDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120

Query: 121 SMPEECDISHQEETSTSQ---------------ELLDLGESVGTESRGLSEEQISLLPTA 180
           SMPEECDISHQEETSTSQ               ELLDLGESVGTESRGLSEEQISLLPTA
Sbjct: 121 SMPEECDISHQEETSTSQAIWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPTA 180

Query: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 239
           RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE
Sbjct: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 240

[Close]

BLAST of Carg13446 vs. NCBI nr
Match: XP_023004618.1 (E3 ubiquitin ligase BIG BROTHER isoform X2 [Cucurbita maxima])

HSP 1 Score: 490.0 bits (1260), Expect = 1.2e-134
Identity = 237/253 (93.68%), Postives = 237/253 (93.68%), Query Frame = 0


Query: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60
           MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC
Sbjct: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60

Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120
           YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEY STVNVDVPEPTYAPSVEEDVVDTH
Sbjct: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYSSTVNVDVPEPTYAPSVEEDVVDTH 120

Query: 121 SMPEECDISHQEETSTSQ---------------ELLDLGESVGTESRGLSEEQISLLPTA 180
           SMPEECDISHQEETSTSQ               ELLDLGESVGTESRGLSEEQISLLPTA
Sbjct: 121 SMPEECDISHQEETSTSQAIWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPTA 180

Query: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 239
           RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE
Sbjct: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 240

[Close]

BLAST of Carg13446 vs. NCBI nr
Match: XP_023004617.1 (E3 ubiquitin ligase BIG BROTHER isoform X1 [Cucurbita maxima])

HSP 1 Score: 490.0 bits (1260), Expect = 1.2e-134
Identity = 237/253 (93.68%), Postives = 237/253 (93.68%), Query Frame = 0


Query: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60
           MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC
Sbjct: 51  MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 110

Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120
           YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEY STVNVDVPEPTYAPSVEEDVVDTH
Sbjct: 111 YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYSSTVNVDVPEPTYAPSVEEDVVDTH 170

Query: 121 SMPEECDISHQEETSTSQ---------------ELLDLGESVGTESRGLSEEQISLLPTA 180
           SMPEECDISHQEETSTSQ               ELLDLGESVGTESRGLSEEQISLLPTA
Sbjct: 171 SMPEECDISHQEETSTSQAIWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPTA 230

Query: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 239
           RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE
Sbjct: 231 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 290

[Close]

BLAST of Carg13446 vs. ExPASy Swiss-Prot
Match: Q8L649 (E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.9e-53
Identity = 117/249 (46.99%), Postives = 155/249 (62.25%), Query Frame = 0


Query: 1   MNEDRQ--MELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNM 60
           MN D +   + HY +  GFPY  T S+MDF+ G  Q  +  Y +A  +  Q N YW+MN 
Sbjct: 1   MNGDNRPVEDAHYTE-TGFPYAATGSYMDFYGGAAQGPL-NYDHAATMHPQDNLYWTMNT 60

Query: 61  QCYKFGVSDHGN-TYYDPLEESRHLPPSVDVGEREWEYPSTVNV-DVPEPTYAPSVEEDV 120
             YKFG S   N ++Y   + + HL   + +G   W+Y   VNV D PE T A SV+   
Sbjct: 61  NAYKFGFSGSDNASFYGSYDMNDHL-SRMSIGRTNWDYHPMVNVADDPENTVARSVQIGD 120

Query: 121 VDTHSMPEEC----------DISHQE----ETSTSQELLDLGESVGTESRGLSEEQISLL 180
            D HS  EEC           +S Q+    +T T +EL++LGE+VGTESRGLS+E I  L
Sbjct: 121 TDEHSEAEECIANEHDPDSPQVSWQDDIDPDTMTYEELVELGEAVGTESRGLSQELIETL 180

Query: 181 PTARCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPIC 232
           PT + K  S FSRK+  ERCVICQ++YK GE+Q+ LPCKH YH++CI+KWL+INK+CP+C
Sbjct: 181 PTKKYKFGSIFSRKRAGERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVC 240

[Close]

BLAST of Carg13446 vs. ExPASy Swiss-Prot
Match: Q9LT17 (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.3e-19
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 0


Query: 109 APSVEEDVVD-THSMPEECDISHQEETSTSQELLDLGESVGTESRGLSEEQISLLPTARC 168
           A  V ED+ D +H+  +  D    +E S  +ELL LG+ VGTESRGLS + I+ LP+ R 
Sbjct: 217 ANRVVEDLEDESHTSQDAWDEMDPDELS-YEELLALGDIVGTESRGLSADTIASLPSKRY 276

Query: 169 KLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEVF 228
           K     ++   +E CVIC++ Y+  E  I LPCKH YH++CI  WL INK+CP+C+ EV 
Sbjct: 277 KEGD--NQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEV- 336

Query: 229 GDESTDASG 237
              ST  SG
Sbjct: 337 ---STSTSG 338

[Close]

BLAST of Carg13446 vs. ExPASy Swiss-Prot
Match: Q6ZNA4 (E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens OX=9606 GN=RNF111 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-09
Identity = 35/106 (33.02%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 138 QELLDLGESVGTESRGLSEEQIS--LLPTARCKLTS-FFSRKK--------------PDE 197
           +EL+ L E +G  +RG S+  I     P    K+T+ +FS++K               +E
Sbjct: 881 EELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEE 940

Query: 198 RCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEV 227
           +C IC    + GE   +LPC H +H  C+ +WL  NK CPIC +++
Sbjct: 941 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 986

[Close]

BLAST of Carg13446 vs. ExPASy Swiss-Prot
Match: Q99ML9 (E3 ubiquitin-protein ligase Arkadia OS=Mus musculus OX=10090 GN=Rnf111 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-09
Identity = 35/106 (33.02%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 138 QELLDLGESVGTESRGLSEEQIS--LLPTARCKLTS-FFSRKK--------------PDE 197
           +EL+ L E +G  +RG S+  I     P    K+T+ +FS++K               +E
Sbjct: 876 EELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEE 935

Query: 198 RCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEV 227
           +C IC    + GE   +LPC H +H  C+ +WL  NK CPIC +++
Sbjct: 936 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 981

[Close]

BLAST of Carg13446 vs. ExPASy Swiss-Prot
Match: Q90ZT7 (E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis OX=8355 GN=rnf111-a PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-09
Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 138 QELLDLGESVGTESRGLSEEQIS--LLPTARCKL-TSFFSRKK--------------PDE 197
           +EL+ L E +G  +RG S+  I     P    K+ T +FS++K               +E
Sbjct: 810 EELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTEE 869

Query: 198 RCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEV 227
           +C IC    + GE   +LPC H +H  C+ +WL  NK CPIC +++
Sbjct: 870 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 915

[Close]

BLAST of Carg13446 vs. ExPASy TrEMBL
Match: A0A6J1H8X1 (E3 ubiquitin ligase BIG BROTHER OS=Cucurbita moschata OX=3662 GN=LOC111460703 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.2e-135
Identity = 237/253 (93.68%), Postives = 238/253 (94.07%), Query Frame = 0


Query: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60
           MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPL+DQGNAYWSMNMQC
Sbjct: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLIDQGNAYWSMNMQC 60

Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120
           YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH
Sbjct: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120

Query: 121 SMPEECDISHQEETSTSQ---------------ELLDLGESVGTESRGLSEEQISLLPTA 180
           SMPEECDISHQEETSTSQ               ELLDLGESVGTESRGLSEEQISLLPTA
Sbjct: 121 SMPEECDISHQEETSTSQAIWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPTA 180

Query: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 239
           RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE
Sbjct: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 240

[Close]

BLAST of Carg13446 vs. ExPASy TrEMBL
Match: A0A6J1L029 (E3 ubiquitin ligase BIG BROTHER isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497860 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 5.8e-135
Identity = 237/253 (93.68%), Postives = 237/253 (93.68%), Query Frame = 0


Query: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60
           MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC
Sbjct: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60

Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120
           YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEY STVNVDVPEPTYAPSVEEDVVDTH
Sbjct: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYSSTVNVDVPEPTYAPSVEEDVVDTH 120

Query: 121 SMPEECDISHQEETSTSQ---------------ELLDLGESVGTESRGLSEEQISLLPTA 180
           SMPEECDISHQEETSTSQ               ELLDLGESVGTESRGLSEEQISLLPTA
Sbjct: 121 SMPEECDISHQEETSTSQAIWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPTA 180

Query: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 239
           RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE
Sbjct: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 240

[Close]

BLAST of Carg13446 vs. ExPASy TrEMBL
Match: A0A6J1KQX5 (E3 ubiquitin ligase BIG BROTHER isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497860 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 5.8e-135
Identity = 237/253 (93.68%), Postives = 237/253 (93.68%), Query Frame = 0


Query: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60
           MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC
Sbjct: 51  MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 110

Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120
           YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEY STVNVDVPEPTYAPSVEEDVVDTH
Sbjct: 111 YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYSSTVNVDVPEPTYAPSVEEDVVDTH 170

Query: 121 SMPEECDISHQEETSTSQ---------------ELLDLGESVGTESRGLSEEQISLLPTA 180
           SMPEECDISHQEETSTSQ               ELLDLGESVGTESRGLSEEQISLLPTA
Sbjct: 171 SMPEECDISHQEETSTSQAIWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPTA 230

Query: 181 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 239
           RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE
Sbjct: 231 RCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIE 290

[Close]

BLAST of Carg13446 vs. ExPASy TrEMBL
Match: A0A1S3CED1 (E3 ubiquitin ligase BIG BROTHER isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499919 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.4e-118
Identity = 212/251 (84.46%), Postives = 223/251 (88.84%), Query Frame = 0


Query: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60
           MNEDRQMELHY+D  GFPYT TESFMDFF+GLHQHQVPAY NAVPLLDQGNAYWSMNMQC
Sbjct: 1   MNEDRQMELHYMD-TGFPYTNTESFMDFFQGLHQHQVPAYGNAVPLLDQGNAYWSMNMQC 60

Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYP-STVNVDVPEPTYAPSVEEDVVDT 120
           YKFGVSDHGNTYY   EES HLPPS+DVGEREWEYP S VNV++PEP+YAPSVEEDVVD 
Sbjct: 61  YKFGVSDHGNTYYGHSEESHHLPPSMDVGEREWEYPTSAVNVEIPEPSYAPSVEEDVVDA 120

Query: 121 HSMPEECDISHQEETSTSQ---------------ELLDLGESVGTESRGLSEEQISLLPT 180
           HS+PEECD+SH+EETSTSQ               ELLDLGESVGTESRGLSEEQISLLPT
Sbjct: 121 HSIPEECDLSHREETSTSQVTWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPT 180

Query: 181 ARCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNI 236
           ARCKLTSFFSRKK DERCVICQMRYKRG+KQIKLPCKHFYHNKCITKWLTINKICPICNI
Sbjct: 181 ARCKLTSFFSRKKLDERCVICQMRYKRGDKQIKLPCKHFYHNKCITKWLTINKICPICNI 240

[Close]

BLAST of Carg13446 vs. ExPASy TrEMBL
Match: A0A5D3CGQ8 (E3 ubiquitin ligase BIG BROTHER isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00890 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.4e-118
Identity = 212/251 (84.46%), Postives = 223/251 (88.84%), Query Frame = 0


Query: 1   MNEDRQMELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNMQC 60
           MNEDRQMELHY+D  GFPYT TESFMDFF+GLHQHQVPAY NAVPLLDQGNAYWSMNMQC
Sbjct: 1   MNEDRQMELHYMD-TGFPYTNTESFMDFFQGLHQHQVPAYGNAVPLLDQGNAYWSMNMQC 60

Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYP-STVNVDVPEPTYAPSVEEDVVDT 120
           YKFGVSDHGNTYY   EES HLPPS+DVGEREWEYP S VNV++PEP+YAPSVEEDVVD 
Sbjct: 61  YKFGVSDHGNTYYGHSEESHHLPPSMDVGEREWEYPTSAVNVEIPEPSYAPSVEEDVVDA 120

Query: 121 HSMPEECDISHQEETSTSQ---------------ELLDLGESVGTESRGLSEEQISLLPT 180
           HS+PEECD+SH+EETSTSQ               ELLDLGESVGTESRGLSEEQISLLPT
Sbjct: 121 HSIPEECDLSHREETSTSQVIWQDEIDPDHMTYEELLDLGESVGTESRGLSEEQISLLPT 180

Query: 181 ARCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNI 236
           ARCKLTSFFSRKK DERCVICQMRYKRG+KQIKLPCKHFYHNKCITKWLTINKICPICNI
Sbjct: 181 ARCKLTSFFSRKKLDERCVICQMRYKRGDKQIKLPCKHFYHNKCITKWLTINKICPICNI 240

[Close]

BLAST of Carg13446 vs. TAIR 10
Match: AT3G63530.1 (RING/U-box superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 4.9e-54
Identity = 117/249 (46.99%), Postives = 155/249 (62.25%), Query Frame = 0


Query: 1   MNEDRQ--MELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNM 60
           MN D +   + HY +  GFPY  T S+MDF+ G  Q  +  Y +A  +  Q N YW+MN 
Sbjct: 1   MNGDNRPVEDAHYTE-TGFPYAATGSYMDFYGGAAQGPL-NYDHAATMHPQDNLYWTMNT 60

Query: 61  QCYKFGVSDHGN-TYYDPLEESRHLPPSVDVGEREWEYPSTVNV-DVPEPTYAPSVEEDV 120
             YKFG S   N ++Y   + + HL   + +G   W+Y   VNV D PE T A SV+   
Sbjct: 61  NAYKFGFSGSDNASFYGSYDMNDHL-SRMSIGRTNWDYHPMVNVADDPENTVARSVQIGD 120

Query: 121 VDTHSMPEEC----------DISHQE----ETSTSQELLDLGESVGTESRGLSEEQISLL 180
            D HS  EEC           +S Q+    +T T +EL++LGE+VGTESRGLS+E I  L
Sbjct: 121 TDEHSEAEECIANEHDPDSPQVSWQDDIDPDTMTYEELVELGEAVGTESRGLSQELIETL 180

Query: 181 PTARCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPIC 232
           PT + K  S FSRK+  ERCVICQ++YK GE+Q+ LPCKH YH++CI+KWL+INK+CP+C
Sbjct: 181 PTKKYKFGSIFSRKRAGERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVC 240

[Close]

BLAST of Carg13446 vs. TAIR 10
Match: AT3G63530.2 (RING/U-box superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 4.9e-54
Identity = 117/249 (46.99%), Postives = 155/249 (62.25%), Query Frame = 0


Query: 1   MNEDRQ--MELHYLDGGGFPYTVTESFMDFFEGLHQHQVPAYANAVPLLDQGNAYWSMNM 60
           MN D +   + HY +  GFPY  T S+MDF+ G  Q  +  Y +A  +  Q N YW+MN 
Sbjct: 1   MNGDNRPVEDAHYTE-TGFPYAATGSYMDFYGGAAQGPL-NYDHAATMHPQDNLYWTMNT 60

Query: 61  QCYKFGVSDHGN-TYYDPLEESRHLPPSVDVGEREWEYPSTVNV-DVPEPTYAPSVEEDV 120
             YKFG S   N ++Y   + + HL   + +G   W+Y   VNV D PE T A SV+   
Sbjct: 61  NAYKFGFSGSDNASFYGSYDMNDHL-SRMSIGRTNWDYHPMVNVADDPENTVARSVQIGD 120

Query: 121 VDTHSMPEEC----------DISHQE----ETSTSQELLDLGESVGTESRGLSEEQISLL 180
            D HS  EEC           +S Q+    +T T +EL++LGE+VGTESRGLS+E I  L
Sbjct: 121 TDEHSEAEECIANEHDPDSPQVSWQDDIDPDTMTYEELVELGEAVGTESRGLSQELIETL 180

Query: 181 PTARCKLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPIC 232
           PT + K  S FSRK+  ERCVICQ++YK GE+Q+ LPCKH YH++CI+KWL+INK+CP+C
Sbjct: 181 PTKKYKFGSIFSRKRAGERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVC 240

[Close]

BLAST of Carg13446 vs. TAIR 10
Match: AT3G19910.1 (RING/U-box superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-20
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 0


Query: 109 APSVEEDVVD-THSMPEECDISHQEETSTSQELLDLGESVGTESRGLSEEQISLLPTARC 168
           A  V ED+ D +H+  +  D    +E S  +ELL LG+ VGTESRGLS + I+ LP+ R 
Sbjct: 217 ANRVVEDLEDESHTSQDAWDEMDPDELS-YEELLALGDIVGTESRGLSADTIASLPSKRY 276

Query: 169 KLTSFFSRKKPDERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEVF 228
           K     ++   +E CVIC++ Y+  E  I LPCKH YH++CI  WL INK+CP+C+ EV 
Sbjct: 277 KEGD--NQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEV- 336

Query: 229 GDESTDASG 237
              ST  SG
Sbjct: 337 ---STSTSG 338

[Close]

BLAST of Carg13446 vs. TAIR 10
Match: AT5G52140.1 (RING/U-box superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 7.4e-18
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 127 DISHQEETSTSQELLDLGESVGTESRGLSEEQISLLPTAR--CKLTSFF---SRKK---P 186
           D ++  E  T +EL +LG+SVG   +GLS+E+IS L T +   K  S++    +KK    
Sbjct: 171 DENNDPENMTYEELTELGDSVGDVGKGLSQERISRLRTHKYGTKTKSWYCLHMKKKFVAD 230

Query: 187 DERCVICQMRYKRGEKQIKLPCKHFYHNKCITKWLTINKICPICNIEVF 228
           D +C IC M Y +G+K   LPCKH YH  CI++WL  NK+C IC  EV+
Sbjct: 231 DSQCSICLMEYAKGDKITTLPCKHIYHKDCISQWLKQNKVCCICKAEVY 279

[Close]

BLAST of Carg13446 vs. TAIR 10
Match: AT3G47180.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-15
Identity = 52/168 (30.95%), Postives = 83/168 (49.40%), Query Frame = 0


Query: 61  YKFGVSDHGNTYYDPLEESRHLPPSVDVGEREWEYPSTVNVDVPEPTYAPSVEEDVVDTH 120
           +   + D   +    +E         ++ E  +EY  +    V E      +E+   +++
Sbjct: 39  FAHAMHDSSPSMISMIESDEESEDEEEINENYYEYFDSNGFGVDEDEINEFLEDQESNSN 98

Query: 121 SMPEECDISHQEETSTSQ----ELLDLGESVGTESRGLSEEQISLLPTARCKLTSFFSRK 180
              E+  +  ++E    Q    EL+ LG+ +G E+RGL+  +IS    A    T  FS  
Sbjct: 99  LEEEDDFLEEEDEIDPDQLSYEELIALGDFIGVENRGLTPIEISTCLNAS---TYVFSHN 158

Query: 181 KPD-ERCVICQMRYKRGEKQIKL-PCKHFYHNKCITKWLTINKICPIC 223
           K + +RCV+CQM ++  E  + L PC H YH++CITKWL   KICPIC
Sbjct: 159 KNEIDRCVVCQMEFEERESLVVLRPCDHPYHSECITKWLETKKICPIC 203

The following BLAST results are available for this feature:

BLAST of Carg13446 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025656.1	1.4e-138	100.00	E3 ubiquitin ligase BIG BROTHER, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022959719.1	2.4e-135	93.68	E3 ubiquitin ligase BIG BROTHER [Cucurbita moschata] >XP_022959720.1 E3 ubiquiti...	[more]
XP_023513892.1	4.1e-135	93.68	E3 ubiquitin ligase BIG BROTHER [Cucurbita pepo subsp. pepo] >XP_023513893.1 E3 ...	[more]
XP_023004618.1	1.2e-134	93.68	E3 ubiquitin ligase BIG BROTHER isoform X2 [Cucurbita maxima]	[more]
XP_023004617.1	1.2e-134	93.68	E3 ubiquitin ligase BIG BROTHER isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg13446 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L649	6.9e-53	46.99	E3 ubiquitin-protein ligase BIG BROTHER OS=Arabidopsis thaliana OX=3702 GN=BB PE...	[more]
Q9LT17	2.3e-19	45.74	E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR P...	[more]
Q6ZNA4	2.8e-09	33.02	E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens OX=9606 GN=RNF111 PE=1 SV=3	[more]
Q99ML9	2.8e-09	33.02	E3 ubiquitin-protein ligase Arkadia OS=Mus musculus OX=10090 GN=Rnf111 PE=1 SV=1	[more]
Q90ZT7	3.6e-09	33.02	E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis OX=8355 GN=rn...	[more]

BLAST of Carg13446 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8X1	1.2e-135	93.68	E3 ubiquitin ligase BIG BROTHER OS=Cucurbita moschata OX=3662 GN=LOC111460703 PE...	[more]
A0A6J1L029	5.8e-135	93.68	E3 ubiquitin ligase BIG BROTHER isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1KQX5	5.8e-135	93.68	E3 ubiquitin ligase BIG BROTHER isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A1S3CED1	6.4e-118	84.46	E3 ubiquitin ligase BIG BROTHER isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034999...	[more]
A0A5D3CGQ8	6.4e-118	84.46	E3 ubiquitin ligase BIG BROTHER isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Carg13446 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63530.1	4.9e-54	46.99	RING/U-box superfamily protein	[more]
AT3G63530.2	4.9e-54	46.99	RING/U-box superfamily protein	[more]
AT3G19910.1	1.6e-20	45.74	RING/U-box superfamily protein	[more]
AT5G52140.1	7.4e-18	44.04	RING/U-box superfamily protein	[more]
AT3G47180.1	2.6e-15	30.95	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 182..222 e-value: 2.0E-4 score: 30.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 181..223 e-value: 2.1E-11 score: 44.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 182..223 score: 11.456568
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 142..227 e-value: 6.8E-18 score: 66.1
IPR033276	E3 ubiquitin-protein ligase BIG BROTHER	PANTHER	PTHR46400	RING/U-BOX SUPERFAMILY PROTEIN	coord: 1..232
None	No IPR available	PANTHER	PTHR46400:SF3	E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER	coord: 1..232
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 177..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13446-RA	Carg13446-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048437	floral organ development
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0046621	negative regulation of organ growth
biological_process	GO:1900057	positive regulation of leaf senescence
biological_process	GO:0051865	protein autoubiquitination
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0031624	ubiquitin conjugating enzyme binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity