Carg13301 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13301
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	radixin-like isoform X1
Location	Carg_Chr07: 6178789 .. 6180765 (-)
RNA-Seq Expression	Carg13301
Synteny	Carg13301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATTTCTCCGGAAAGATGAACATCGAGGACCTCTTATCTTATGGCGACGATCTGGTGGCTTTATTGAAGGACCAAAACGACGTTCAAACCTTGAATCAATGTCTCCAACATTTCAACGCCCTTCAATCTTCTTCTCACGATGATTCCCGTAATGTTCACAGCTCAGTTCAAGGTCTATTTTCTCTCTTTCTCTCGAAAAATAGGTTAAATTCGTAATCGTTTCGCGGTTAGTGATTTTGGGTTTTTTTTGGGGGGTGAACGAATTGTGAGAGTTGGTTCCGTATAATTTGTTTAACGAGTTGTTAATTGATTCAGATTATGAGAAGAAAATCGAGGAATGTCGGGTGAAAACAGAGGAGGCGAAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTTGAAAAGGAGATCGAAGAGGAAGTTAGGGAAGAACATTTGCTCATGGAGGAGATTAGATGAGTATATAATTAAATTTATGAGTTAGATTTGAGATATGATTCTTTCTCCCTAATGTATTTGAATGATTTTCTTCAACACACTTGTCTCCAATCAGATTAATGAGCTAGACCGACAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCAACGAAGAAACTTGAACAACAAGAACTTAGGGCGCAGTGAGTATATATCTAATTTCTATAGTGAAGATGTGACTGTTAATTTAGTAGCTATGAACTAATTCCTGTAAAATTTATGTCTATTTTATTAATGTGCAGTTCTAAGTTTTATCTGACAACCATAATCTTTATGCATATTAGTGTTCTTCTTGTTAAGAATCACGACTCTCTACAATAGTAGTATGATATTGTCCACTTTGAGTATAAGCTCTCATGGCTTTGCTTTTGGCTTTTCCAAAAGGCTTCATACCAAAGAAGATGTATTCCTTACTTATAAATCCATGATCAACCCCTTAATTAGCCGATGTGGGACTCCTCTCCCAACAAAATCCTCAACAATCCGCCCCTCGAACAAAGTACACCAAAGAGCCTCCCTAAGACCTATGGAACCCTTGAACAACCTCCTCTTAATTGAGGCTAGACTCCTTTGGAGCCCTCGAACAAAGTACACCCTTTATTCAACACTTGAGTCACTTTTGACTACACGTTCGATGTTCACAACTTCTTTATTCGACATTTGAGTATTCTATTGACATGGCTAAGTTAAGGGAATGACTTTGATACTATGTTAGGAATCACGACTCTCTATAACGGTATGATATTGTCCACCTTGAGCATAAGCTCTCATGGGTTTGCTTTTGGTTTCTCCAAAGGGCCTCATACCAATGAAGATGTATTCCGTCCTATAAACCCATGATCAACCCTTTAATTAGTTGACGTGGGACTTCTCTCCTACCCATCCTCTAACACTTCTGAAGTAACTTAGATCTGCTTCTGCATTTGAATCTGTGTTCTGTGCTGAGAACAAGAAATTTCTCTTCTCTGGGTATTTGAGATTTGTTAATGCCTCCACACCAGTTTCTTGTGTAGATGGAGGTGGATTAGACAATAACACCAGGAACTGGATTTACAATGTTTACAATTACCATGTTCTTCTTTACTATGAACTTATTTAAACTGGTTGATACTTGATAAGTCGAATCTCGGTAATCTTTAGTTGACATTAACCCGACAATTCTACATCTTCCAAATTGATACACATTTTTGTTCTTCTTACAGGAGGAAGCTTTCAATGTATGCATCTGTCACTGATATCATTCCAAACATGGATGATCACTCCAAAATATCTGGCCGTATCCTTCATCTGAGTTTCTACTCTTCTGTTATACATATATTCTCTGGCTATTACTTTACCTTAACGTTAATCAACTACAGATATTGTGGATAGAAATAAACGGGTTGTGCAGAAGTTTGAATTGGATCCGACTAAGATGTCTTCTTTTGATATATGCAATGACATTTGGAATATGATTAATTCCCCATAGTACCA

mRNA sequence

ATGGGGGATTTCTCCGGAAAGATGAACATCGAGGACCTCTTATCTTATGGCGACGATCTGGTGGCTTTATTGAAGGACCAAAACGACGTTCAAACCTTGAATCAATGTCTCCAACATTTCAACGCCCTTCAATCTTCTTCTCACGATGATTCCCGTAATGTTCACAGCTCAGTTCAAGATTATGAGAAGAAAATCGAGGAATGTCGGGTGAAAACAGAGGAGGCGAAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTTGAAAAGGAGATCGAAGAGGAAATTAATGAGCTAGACCGACAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCAACGAAGAAACTTGAACAACAAGAACTTAGGGCGCAGAGGAAGCTTTCAATGTATGCATCTGTCACTGATATCATTCCAAACATGGATGATCACTCCAAAATATCTGGCCATATTGTGGATAGAAATAAACGGGTTGTGCAGAAGTTTGAATTGGATCCGACTAAGATGTCTTCTTTTGATATATGCAATGACATTTGGAATATGATTAATTCCCCATAGTACCA

Coding sequence (CDS)

ATGGGGGATTTCTCCGGAAAGATGAACATCGAGGACCTCTTATCTTATGGCGACGATCTGGTGGCTTTATTGAAGGACCAAAACGACGTTCAAACCTTGAATCAATGTCTCCAACATTTCAACGCCCTTCAATCTTCTTCTCACGATGATTCCCGTAATGTTCACAGCTCAGTTCAAGATTATGAGAAGAAAATCGAGGAATGTCGGGTGAAAACAGAGGAGGCGAAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTTGAAAAGGAGATCGAAGAGGAAATTAATGAGCTAGACCGACAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCAACGAAGAAACTTGAACAACAAGAACTTAGGGCGCAGAGGAAGCTTTCAATGTATGCATCTGTCACTGATATCATTCCAAACATGGATGATCACTCCAAAATATCTGGCCATATTGTGGATAGAAATAAACGGGTTGTGCAGAAGTTTGAATTGGATCCGACTAAGATGTCTTCTTTTGATATATGCAATGACATTTGGAATATGATTAATTCCCCATAG

Protein sequence

MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP

Homology

[Close]

BLAST of Carg13301 vs. NCBI nr
Match: KAG7027420.1 (hypothetical protein SDJN02_11433, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352.8 bits (904), Expect = 1.8e-93
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELDRQRISVQERKQATKKLEQQE 120
           YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELDRQRISVQERKQATKKLEQQE
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELDRQRISVQERKQATKKLEQQE 120

Query: 121 LRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNM 180
           LRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNM
Sbjct: 121 LRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNM 180

Query: 181 INSP 185
           INSP
Sbjct: 181 INSP 184

[Close]

BLAST of Carg13301 vs. NCBI nr
Match: KAG6595410.1 (Kinetochore protein SPC24-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351.7 bits (901), Expect = 3.9e-93
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELDRQRISVQERKQATKKLEQQE 120
           YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELDRQRISVQE+KQATKKLEQQE
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELDRQRISVQEKKQATKKLEQQE 120

Query: 121 LRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNM 180
           LRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNM
Sbjct: 121 LRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNM 180

Query: 181 INSP 185
           INSP
Sbjct: 181 INSP 184

[Close]

BLAST of Carg13301 vs. NCBI nr
Match: XP_022931907.1 (uncharacterized protein LOC111438184 [Cucurbita moschata] >XP_022931908.1 uncharacterized protein LOC111438184 [Cucurbita moschata])

HSP 1 Score: 340.9 bits (873), Expect = 6.9e-90
Identity = 183/201 (91.04%), Postives = 184/201 (91.54%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----------------INELDRQR 120
           YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE                 INELDRQR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIRLVSNQINELDRQR 120

Query: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180
           ISVQE+KQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL
Sbjct: 121 ISVQEKKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180

Query: 181 DPTKMSSFDICNDIWNMINSP 185
           DPTKMSSFDICNDIWNMINSP
Sbjct: 181 DPTKMSSFDICNDIWNMINSP 201

[Close]

BLAST of Carg13301 vs. NCBI nr
Match: XP_023518318.1 (uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 182/201 (90.55%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQ FNALQSS HDDSRNVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----------------INELDRQR 120
           YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE                 INELDRQR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIRLVTNQINELDRQR 120

Query: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180
           ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL
Sbjct: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180

Query: 181 DPTKMSSFDICNDIWNMINSP 185
           DPTKMSSFDICNDIWNMINSP
Sbjct: 181 DPTKMSSFDICNDIWNMINSP 201

[Close]

BLAST of Carg13301 vs. NCBI nr
Match: XP_022966574.1 (uncharacterized protein LOC111466216 [Cucurbita maxima])

HSP 1 Score: 319.3 bits (817), Expect = 2.2e-83
Identity = 174/201 (86.57%), Postives = 177/201 (88.06%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           MGDFSGKMNIE+LLSYG+DLV LLKDQNDVQTLNQCLQHFNALQSS HDD  NVH  VQD
Sbjct: 1   MGDFSGKMNIEELLSYGNDLVVLLKDQNDVQTLNQCLQHFNALQSSCHDDFSNVH-LVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----------------INELDRQR 120
           YEKKIEECRVKTEEAKARTVADDEMDILEKE+EEE                 INELDRQR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEVEEELREEHLLMEEIRLVTNQINELDRQR 120

Query: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180
           ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL
Sbjct: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180

Query: 181 DPTKMSSFDICNDIWNMINSP 185
           DPTK SSFDICNDIWNMINSP
Sbjct: 181 DPTKTSSFDICNDIWNMINSP 200

[Close]

BLAST of Carg13301 vs. ExPASy Swiss-Prot
Match: Q67XT3 (Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37
Identity = 83/199 (41.71%), Postives = 133/199 (66.83%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           MG+ S   +IEDL+SYGDDL+ LL  +N    ++Q  + F AL  + H+D   +  S++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEE-----------------EINELDRQR 120
            + K+  C+ KTEEA +   A+DE++ L+KE++E                 E+ +L+ Q 
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQL 120

Query: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180
            S+ E KQ+TK+  + +LRA++KLSMYASVT++IP++DD SKISG++VDR KR+++KF+ 
Sbjct: 121 SSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQF 180

Query: 181 DPTKMSSFDICNDIWNMIN 183
           +  KM++++ CN IW++IN
Sbjct: 181 ETNKMTAYETCNSIWSIIN 199

[Close]

BLAST of Carg13301 vs. ExPASy TrEMBL
Match: A0A6J1F034 (uncharacterized protein LOC111438184 OS=Cucurbita moschata OX=3662 GN=LOC111438184 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.3e-90
Identity = 183/201 (91.04%), Postives = 184/201 (91.54%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----------------INELDRQR 120
           YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE                 INELDRQR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIRLVSNQINELDRQR 120

Query: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180
           ISVQE+KQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL
Sbjct: 121 ISVQEKKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180

Query: 181 DPTKMSSFDICNDIWNMINSP 185
           DPTKMSSFDICNDIWNMINSP
Sbjct: 181 DPTKMSSFDICNDIWNMINSP 201

[Close]

BLAST of Carg13301 vs. ExPASy TrEMBL
Match: A0A6J1HU69 (uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.0e-83
Identity = 174/201 (86.57%), Postives = 177/201 (88.06%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           MGDFSGKMNIE+LLSYG+DLV LLKDQNDVQTLNQCLQHFNALQSS HDD  NVH  VQD
Sbjct: 1   MGDFSGKMNIEELLSYGNDLVVLLKDQNDVQTLNQCLQHFNALQSSCHDDFSNVH-LVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----------------INELDRQR 120
           YEKKIEECRVKTEEAKARTVADDEMDILEKE+EEE                 INELDRQR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEVEEELREEHLLMEEIRLVTNQINELDRQR 120

Query: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180
           ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL
Sbjct: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180

Query: 181 DPTKMSSFDICNDIWNMINSP 185
           DPTK SSFDICNDIWNMINSP
Sbjct: 181 DPTKTSSFDICNDIWNMINSP 200

[Close]

BLAST of Carg13301 vs. ExPASy TrEMBL
Match: A0A6J1CR83 (uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.8e-75
Identity = 159/201 (79.10%), Postives = 168/201 (83.58%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           MGDFSGK+NIE+LLSYG+DLVALLKDQ DVQTLNQCL+H  ALQS   DD  NVHSSVQD
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEE-----------------EINELDRQR 120
           YEKKIE CR KTEEAKARTVAD EMD+LE+E+EE                 EINELD QR
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIRLVTSEINELDCQR 120

Query: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180
           ISVQERKQA KKLEQQELRAQRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQKFEL
Sbjct: 121 ISVQERKQAMKKLEQQELRAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEL 180

Query: 181 DPTKMSSFDICNDIWNMINSP 185
           DPTK S+FDICN IW+MINSP
Sbjct: 181 DPTKTSAFDICNSIWDMINSP 201

[Close]

BLAST of Carg13301 vs. ExPASy TrEMBL
Match: A0A6J1IPN8 (uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.2e-73
Identity = 155/201 (77.11%), Postives = 164/201 (81.59%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           M DF+GK NIE++LSYGDDLVALL DQNDVQTLNQCL+HF  LQSS  DD  NV SSVQD
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEE-----------------EINELDRQR 120
           YEKKIE CR KTEEAKA TVADDE+DILEKE+ E                 EIN+LDRQR
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180
           ISVQERKQA KKLEQQELR QRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQ+FE 
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 181 DPTKMSSFDICNDIWNMINSP 185
           DPT +SSFDICN IWNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of Carg13301 vs. ExPASy TrEMBL
Match: A0A6J1GFS1 (uncharacterized protein LOC111453528 OS=Cucurbita moschata OX=3662 GN=LOC111453528 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.8e-72
Identity = 153/201 (76.12%), Postives = 163/201 (81.09%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           M DF+GK NIE+LLSYGDDLVALL DQNDVQTLNQCL+HF  LQSS  DD  NV SSVQD
Sbjct: 1   MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEE-----------------EINELDRQR 120
           YEKKIE CR KTEEA+  TV+DDE+DILEKE+ E                 EIN+LDRQR
Sbjct: 61  YEKKIEACRQKTEEARTSTVSDDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180
           ISVQERKQA KKLEQQELR QRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQ+FE 
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 181 DPTKMSSFDICNDIWNMINSP 185
           DPT +SSFDICN IWNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of Carg13301 vs. TAIR 10
Match: AT3G08880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). )

HSP 1 Score: 157.9 bits (398), Expect = 7.7e-39
Identity = 83/199 (41.71%), Postives = 133/199 (66.83%), Query Frame = 0


Query: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQD 60
           MG+ S   +IEDL+SYGDDL+ LL  +N    ++Q  + F AL  + H+D   +  S++D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEIEE-----------------EINELDRQR 120
            + K+  C+ KTEEA +   A+DE++ L+KE++E                 E+ +L+ Q 
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQL 120

Query: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180
            S+ E KQ+TK+  + +LRA++KLSMYASVT++IP++DD SKISG++VDR KR+++KF+ 
Sbjct: 121 SSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQF 180

Query: 181 DPTKMSSFDICNDIWNMIN 183
           +  KM++++ CN IW++IN
Sbjct: 181 ETNKMTAYETCNSIWSIIN 199

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BLAST of Carg13301 vs. TAIR 10
Match: AT5G01570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-26
Identity = 66/175 (37.71%), Postives = 111/175 (63.43%), Query Frame = 0


Query: 9   NIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEEC 68
           N E ++S+GD+L+ +L D+     L Q L+   A+  S  +D + +H S+QD +KK++ C
Sbjct: 7   NFEMVISWGDELIHVLDDRKGFDVLVQTLEQLRAIPFSCDEDFKEIHESLQDLQKKLDVC 66

Query: 69  RVKTEEAKARTVADDEMDILEKEIEEE------INELDRQRISVQERKQATKKLEQQELR 128
           + KT+EA +    ++E++ L+KE++EE      + E  R     +E + A K+ ++ +LR
Sbjct: 67  KEKTDEANSEIADEEEIERLQKELDEELELECKLKEELRYEALFEEHRLAIKRNKRDQLR 126

Query: 129 AQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSS-FDICND 177
            + KL MYASVT +IPN+DD  K SG++V R+KR++ KFE D  K +S ++ CN+
Sbjct: 127 TETKLPMYASVTRVIPNIDDSLKTSGYMVGRDKRLMDKFEFDSNKSTSVYETCNE 181

The following BLAST results are available for this feature:

BLAST of Carg13301 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027420.1	1.8e-93	100.00	hypothetical protein SDJN02_11433, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6595410.1	3.9e-93	99.46	Kinetochore protein SPC24-like protein, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022931907.1	6.9e-90	91.04	uncharacterized protein LOC111438184 [Cucurbita moschata] >XP_022931908.1 unchar...	[more]
XP_023518318.1	1.0e-88	90.55	uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo]	[more]
XP_022966574.1	2.2e-83	86.57	uncharacterized protein LOC111466216 [Cucurbita maxima]	[more]

BLAST of Carg13301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67XT3	1.1e-37	41.71	Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 ...	[more]

BLAST of Carg13301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F034	3.3e-90	91.04	uncharacterized protein LOC111438184 OS=Cucurbita moschata OX=3662 GN=LOC1114381...	[more]
A0A6J1HU69	1.0e-83	86.57	uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216...	[more]
A0A6J1CR83	8.8e-75	79.10	uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1IPN8	2.2e-73	77.11	uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320...	[more]
A0A6J1GFS1	1.8e-72	76.12	uncharacterized protein LOC111453528 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]

BLAST of Carg13301 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08880.1	7.7e-39	41.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G01570.1	2.0e-26	37.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..109
None	No IPR available	GENE3D	3.30.160.570	Ncd80 complex, Spc24 subunit	coord: 122..183 e-value: 4.7E-11 score: 44.3
IPR044951	Kinetochore protein SPC24-like	PANTHER	PTHR35730	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13301-RA	Carg13301-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051983	regulation of chromosome segregation