Carg13276 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13276
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr07: 5998590 .. 6000452 (-)
RNA-Seq ExpressionCarg13276
SyntenyCarg13276
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTCGCCGCCGCCGTCAAACCAAAAAAAGGGATCAGAAGTTTAATTATGACCACTCATTGGGCGACGGAGGGTGGGGTTTTCAGAGTGGCTGTGGCTTTGGCGACTTGGCTTGAGCTGAGCCGTGGGAGATTATTAAGGAGTCGTTACTATCGGCTTAAGACTTGATCGGCGGCTTACTATTTAAATTTTGTACCCAAAAAAAATCTTAAAATTTCATTATTACCATTTAATATATAAAAATATGAAAATGTTTCCTTTGAAATTTTAATAAGCTTGTAGAAGAGAAGTTTGATCCAATTAATAAAAAATTTGATAAATAATTATTTATTTTAATATTTGGGAAATATTTCATTTATTTTAAATTAAATAAATTTAGAGAAAATAATTGGTTATTGAGGGGTGAGAAAATAGTAGTAAAGAAAAATTACTATGATTAAAATAAAAAAAGAATATGAATAATTCAACGAAGACGTAAAAGTCATTTTAAAATTTTAGGTAAACTTTTGGAATAGTTCGAGAAGAAAAGTTTGTGGTTTATAGATACCTAAATAGTAAAGAAAATGAAAAATTTTAAAAATAAAAAATATTAATAAATTTTAACATTTAAAAGGTCGTATATAATTTTTGAGTGTTGGAATATTATTGAATAAAGTTTATGTTTTTGAAAAAAATGATGTGACAGACTAACAAAAAAAAAAACAAAAAAAAAATAATAGAGTTAAATTAATAAAAATATCTGTAAATTTTGTAATTTCTTTAAATATATTCATAAACTTTAAAAGGTGGTTCTTTATTTGGGAAATAGCTTTGTACTTCCTTAAAAATATTTCTAATTATTTTTCAAAAAATAAAAAGTACTTTTAATACCATTAATACATAGTCCGAACCTTTTAATACCATTAATACACCGTGCAGAATCATTAACATTCATTTTTGCAAAGAGCTCTCTCAATTTAATTGGTAAGTGGGTTGTTCAACAATTCACCCCAATCCACTTCACGAGAGACAAGTCAAGCCAATCTCGAAAATAGGATAGAACGTCGACTAAGACCAACCAAGTAAGTGACCTTATTATTGGTCTGTTTAAAATTTGATGTTGTGTGATGACGCATGCCTTGTGGAATCTTCACGTGTCATATGTTGGACGTGTGTAAAATATTTATGAAACGATATGATTATGATATGTAATGTAAATGTTATGTTATGTTATGATATGATGTGTTTGATGATATATTTGAGATATGATACGAGGAGGATAAGATATATGTTATAAAACGATATGACTATAATATATTAAAATATATATTATGATATGAGATGTGGATGATACATTATGTGAATGATATAATATGATGCGTTTGATGATATAATGGAGGTATGGTACGTGAAGATAAGATATATATTATGAAATGATATAATTATCGTACATTATTTAAACATAAAATGAATTATTTTGTTTATAAAAAAATGGAATATGTAATACAAGAATTTAGGTTATTAAAAAAAAAGAATTAAATAATTAAGTGAAAATGTTATAAAGAATTAAATAATTATTAGTTCACAGGTTCTGGTTATGATTAGAATTAGGGGTATAAATAGGCGCAATGGGCGTGGTTGATTCCCAACAATATCACCAATTTCTCCCCTTTCATTCACTATATAAATATATTTATTCTGAAACAAAAGCCGTTTCGAAACTCGCAGAACCTACGCTCTGTTTTGCAGCCTTTTCACTTTTCAGATTCTCTGGCAGTCGCCGCCGTGGGCCGCCGTTTTCGGGTTGAGCACCACCGGAATGGTGGCGCATTAATTTCTGAGCTTAGGTTTCTGGATTTCAGGTCATTTAAGGGTTCTTGA

mRNA sequence

ATGGGCCTCGCCGCCGCCGTCAAACCAAAAAAAGGGATCAGAAGTTTAATTATGACCACTCATTGGGCGACGGAGGGTGGGGTTTTCAGAGTGGCTGTGGCTTTGGCGACTTGGCTTGAGCTGAGCCATTCTCTGGCAGTCGCCGCCGTGGGCCGCCGTTTTCGGGTTGAGCACCACCGGAATGGTGGCGCATTAATTTCTGAGCTTAGGTTTCTGGATTTCAGGTCATTTAAGGGTTCTTGA

Coding sequence (CDS)

ATGGGCCTCGCCGCCGCCGTCAAACCAAAAAAAGGGATCAGAAGTTTAATTATGACCACTCATTGGGCGACGGAGGGTGGGGTTTTCAGAGTGGCTGTGGCTTTGGCGACTTGGCTTGAGCTGAGCCATTCTCTGGCAGTCGCCGCCGTGGGCCGCCGTTTTCGGGTTGAGCACCACCGGAATGGTGGCGCATTAATTTCTGAGCTTAGGTTTCTGGATTTCAGGTCATTTAAGGGTTCTTGA

Protein sequence

MGLAAAVKPKKGIRSLIMTTHWATEGGVFRVAVALATWLELSHSLAVAAVGRRFRVEHHRNGGALISELRFLDFRSFKGS
Homology
[Close]
BLAST of Carg13276 vs. NCBI nr
Match: KAG7027396.1 (hypothetical protein SDJN02_11408, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MGLAAAVKPKKGIRSLIMTTHWATEGGVFRVAVALATWLELSHSLAVAAVGRRFRVEHHR 60
          MGLAAAVKPKKGIRSLIMTTHWATEGGVFRVAVALATWLELSHSLAVAAVGRRFRVEHHR
Sbjct: 1  MGLAAAVKPKKGIRSLIMTTHWATEGGVFRVAVALATWLELSHSLAVAAVGRRFRVEHHR 60

Query: 61 NGGALISELRFLDFRSFKGS 81
          NGGALISELRFLDFRSFKGS
Sbjct: 61 NGGALISELRFLDFRSFKGS 80

The following BLAST results are available for this feature:
BLAST of Carg13276 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027396.11.2e-35100.00hypothetical protein SDJN02_11408, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg13276 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13276 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13276 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13276-RACarg13276-RAmRNA