Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. AGCAAGTTCTCTTTCGAGAAGTTGTTTGTAGCCTTTGCTATCTCTTTGGTTGTGAACATCCTCGCCGATTTGCCACTGCTGTTGGCTGTTAGAATCACTTCACGAACTTGTTTCGAACTGAGTTCGTTCCCTTTGGGAATCTGTTGACGTCTTTTGAAAATTATAAACATGGTCGAGCCACCAATCACCACGACGATCACTCCAGCCATTGCTGAGAATGAACAAATTTATTCACCATTGTCAAAGTAAGTTCATTCTAGTTTCACACTCAATGAATACCACAATTTGCCTTGATTTATATACCTCCAAGAATAGCAGGCATCTTCTTATGCTTCTTGTGAATTCTCTTGTTCTGTATTTTCACATCTGCATCAAACCAAAAGATTTCATGTCATCAAAGAATATAATAAAGCATTTAAATTCAAGTTTTTCTTGGTGTAAATGTTGCTAAATTTTACTCACTGTTGCCATTGCATAAGCCATTAACAGGATCCCACTTGAAAGGCACCTTGCAGAAGCACCTCCTCTGGCGAGCATTTGCAGGTTCCGGCAAACAAGCAGAATTCTCCCAATTCCGGCAGTCTGCAGCCACTCGACACGGCGGCTCTCGCGGAGGTGCCCATTGAATCTCCACCCCAGATTCTGGCCACTTCTTCTTCGCCGGAACAGAACCACCCAAATTCACAAAACATTCATAAGCCGAACACCGCTCCTTCCGCACCCTGA mRNA sequence AGCAAGTTCTCTTTCGAGAAGTTGTTTGTAGCCTTTGCTATCTCTTTGGTTGTGAACATCCTCGCCGATTTGCCACTGCTGTTGGCTGTTAGAATCACTTCACGAACTTGTTTCGAACTGAGTTCGTTCCCTTTGGGAATCTGTTGACGTCTTTTGAAAATTATAAACATGGTCGAGCCACCAATCACCACGACGATCACTCCAGCCATTGCTGAGAATGAACAAATTTATTCACCATTGTCAAAAAGCACCTCCTCTGGCGAGCATTTGCAGGTTCCGGCAAACAAGCAGAATTCTCCCAATTCCGGCAGTCTGCAGCCACTCGACACGGCGGCTCTCGCGGAGGTGCCCATTGAATCTCCACCCCAGATTCTGGCCACTTCTTCTTCGCCGGAACAGAACCACCCAAATTCACAAAACATTCATAAGCCGAACACCGCTCCTTCCGCACCCTGA Coding sequence (CDS) ATGGTCGAGCCACCAATCACCACGACGATCACTCCAGCCATTGCTGAGAATGAACAAATTTATTCACCATTGTCAAAAAGCACCTCCTCTGGCGAGCATTTGCAGGTTCCGGCAAACAAGCAGAATTCTCCCAATTCCGGCAGTCTGCAGCCACTCGACACGGCGGCTCTCGCGGAGGTGCCCATTGAATCTCCACCCCAGATTCTGGCCACTTCTTCTTCGCCGGAACAGAACCACCCAAATTCACAAAACATTCATAAGCCGAACACCGCTCCTTCCGCACCCTGA Protein sequence MVEPPITTTITPAIAENEQIYSPLSKSTSSGEHLQVPANKQNSPNSGSLQPLDTAALAEVPIESPPQILATSSSPEQNHPNSQNIHKPNTAPSAP
Homology
BLAST of Carg13230 vs. NCBI nr
Match: KAG7027350.1 (hypothetical protein SDJN02_11362 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 181.0 bits (458), Expect = 4.7e-42 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query: 1 MVEPPITTTITPAIAENEQIYSPLSKSTSSGEHLQVPANKQNSPNSGSLQPLDTAALAEV 60
MVEPPITTTITPAIAENEQIYSPLSKSTSSGEHLQVPANKQNSPNSGSLQPLDTAALAEV
Sbjct: 1 MVEPPITTTITPAIAENEQIYSPLSKSTSSGEHLQVPANKQNSPNSGSLQPLDTAALAEV 60
Query: 61 PIESPPQILATSSSPEQNHPNSQNIHKPNTAPSAP 96
PIESPPQILATSSSPEQNHPNSQNIHKPNTAPSAP
Sbjct: 61 PIESPPQILATSSSPEQNHPNSQNIHKPNTAPSAP 95
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7027350.1 | 4.7e-42 | 100.00 | hypothetical protein SDJN02_11362 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 10..52 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 66..95 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..95 |
Relationships
The following mRNA feature(s) are a part of this gene:
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