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Carg13158 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTCTTAAAGAAGCAAGCCGGAAAAGGCCGATAATGGAAAGAGGGCCTTCGTCAATCACAAATTTCCACCATTAAATTTCTCGTCGGAGTTCGCCGATGTCACCGCCGTCCACTGTTTTCACTGAAGCCGAAGCTAGAGCCCTGCAATAGTATCAACCATGACCTCGAGCGCGATGGCGGCGACGGCTCAGCAACACCAGTGGAGCGAGGAGGAGACAAGGGAGTTCATCCGGATTCGAGCCGACCTAGAGAGGGACCTGACGGTGGTTTCCACCGGAGAAGGTGCGGCGGTGAAGAAGAAGACACTGTGGGACATGGCGAGTGCAAGGATGAGAGAGCGAGGGTTTTGGAGGACCGCCTATCAGTGCAAATGCAAGTGGAAGAATCTCCTCAGTCGCTACAAGGTTCGTCCAGTTTTCATTCCGTATTCATTTGAGGATTTTTTTTTTTAATCAGTCTGTTCTCCGTTATGTTTCTTTCAAGTGGGCTCCTCTGAATCTGGACTTGTTCTTGCTTTGATATTTTGATTCTCGTGGATTTCGATGGGGTTCAATTTTGCCATTTATGGTTGCAAATTCTTAAAGCTAAATCTGAGAAAGGTAGTAAAATGCTGATAATGTCTCGCAACATGCGGACGAGAAAATGACAAGATGTCAGAAAGTCTTTATTCAAAATAGACATGTTTTGACCTTTCAAAACTCTAGCTGCCTGTAATTGCCTGTAAGAGGAGGTTTGGAGAAAATGGTTAGAATTGAAGGGTATTGCTAAGAGGTAGCAACCATTGTTTTTGGAGATTTGTCTCTCAAAATGGCTTTCTTCATTTCTAGGAGTACATATCAACTCAGGCACGGTGGCAAAATTGAATATCTGTTGACTACTTGTAAAAGATAACATCATTCTACTTAACTTCTTAGGTGTATGTCTTGTCAAAGTGTGTTAATGCTTCCATTTCCAGTCTTGTTTCTGTCCAATCTTCTTGGTAGGTTTATTTCCCCTGGAATCGAAGTGAGAAGAGATTCTAGAAAATCTGACTGTTCTTAAGTTTTCTCTTATAGATCTTTCTTACACAATCTCTTAGTTACCTATGAATGGTCAGCCTTTCAATTCCAATCTCTTAGTTACCCCAATGGATGAAAAGCCGAAGTTGATTCCAAAAGGCTTTCTGGTTAACATTTAATGGAATTTGGTTCTCAGATTTCATTCTGAACAAAGACCTGTCCACGTACCATAGCCAAAGACTGCATTATCTTATCACCTTACCCTAATGAATGTGTGGCCAGCAAGAAGTTGAAGGAGATAGCCACAGAATTATGGAAAAAACTAGAAGGCAGTGATACCTTTTCCTATATTTCTGATATGCTGCATCATAGAGGGGATAAGCAGACTTCAGGCTTAGGTTTCTTTAACTTGATATTGTTACGAGTGTTAACTTACCAAGAGCTACATGCACCAGAAAAAGAACTTGACTTTGTTTTGACACTTAAGCTTTGTGAAGATGCGGGATTCACATGATGGGAGGAGGGGTAGAAGTTAGAATGAGTAAGAAGGTGATTAAAGAGGGATTTTAACTTTGAGATCCCACATCGGTTGGGGAGGAGAACAAAGCATTCTTTATAAAACTTGAGGGGAAGCCCAAAAGGGAAATTTCCAAAGAGGACTATCTACTAGCGGTGCATTTGACTGTTACAAATGGTATCAGAGTCAGACACCAAACGATTTGCCAACGAGGAGGTTGAGCCTCGAAGGGGGGTAGGCATGAGGCGGTGTGCCAGTTAGGACACTGGGCCTCGAAGGGGGTAGATTGGGGAGTCTCACATTGTTTGAAGAAGGGAATGAGTGCCAGCAAGGATACTGAGCCTCGAAGGGGAGTGGATTGTGAGATCCCACGTTGGTTGAGGAGGATAACAAAGCATTCTTTATAAGGGTGTAGAAACCTCTCCCTAGCAGACGTGTTTTAAAAACTTTGAGGGGAATCTCGAAAGGGAAAACCCAAGAAGGACAATATCTACTAGCAATGGGCTTGGACTGTTACAAATAGTATCAGAGCCAGAAACCGGGCGGTGTGCCATTGAGGACGTTGAGCTTCAAAGTAGCATGGATTGTGAGATCCCACATCGAATGGAGAGGAGAATGAAGCATTCTTTATAAGGGTGTGGAAACTTCTTCCTAGCAGAAGCGTTTTAAAAACCTTGAGGGGAAGCTCGGAAGGGAAAAATCTAAAAAGGACAATAACTGCTAGCAGTGAGCTTGAGCCGTTACATTAACATGTAGAAAAAAGCTCAAAGAGGACAGTATCTGCTAGAAGTGAGTTTGGGCCGTTACATTAACATGTGGAAAAAAAGCTCAAAGAGGACAATATCGGCTAGAAGTGAGCTTGGGCCGTTACATTAACATGTAGAAAAAAGCTCAAAGAAGACCATATCGGCCAGCAGTGAGCTTGGGCCGTTACATTAACACGTGGAAAAAAACCAGATATCTGTCATTCTAACTCTTGTTTTATCCATGAGATCAATGAACTCCTATAATAAAAACAAGCGCAGTTAATTCAGGAAGTTTCTCGTTCACTAAAACCCATCTTAACTGAGCTTCCTGCTCTCTCTTTAAAGCACCTTCTTAAACTAAAGTTTCCAAACAAGAACTTGCAGTGCCATTACAGTTCAAACATCGAGTGTGGTCGACATTGCGAGTGAAAAATTGACCTGAACCCTTCCTTTATGTGGGAGGTTGGTCATAAGTGGCGAAACATTTAATTGCTTCCCATATATGCAGTAATTCTCGTTCATTAGTATTTGTAGAAAAGACATCTTTTACTTTTAGATCCGTTTCATGTAATTCCGACTAAACTCTTCATAGAATTCTAGTAATAAAATAGCCTAGAGTTAGTTTGACTTGTCAAGTCCAATTTTGGCCCCAAAACTCAATGAGCTAAAGATACCCCTAGAAGTTGAGGCAGTTGGCATTGCTTATGTTGTTTTAATCACCGTCATATGTTTCTAATTTTATAACGGTTGTACAGGGGAAGGAGACAACCCATAAAGAGTTTGGCTGGCAATGCCCATTTTTTGAGGAAATCCGTGCAGTATTTGCCGTAAGGGAGAAAGCTATGCACCGATTGATCCATGAACCTGAAGCAGGTTCTAGTGCAACAAAGAAAAGAGGGAGGGAGAGAAGTTTAGAAGAATATTCAGATCTCAAAGAACTTGATGAAGAAGAAAGTGAGGAGGAGATCCCAACTCAAAGCAACTCACAGAAGGGAAAGGCTATAGGAACTCACCCAGCAAAGTCTTCAAGAACAGCTGGTTCTAAAAGTTCAAGTAGCTCGGTTAGTAATGAAATCCTAGAGTTGTTGAAGGGCTTCTTTCAGTGGCAGCAGAGGATGGAAATGGAATGGAGGGAAATACTTGAGAGACATTACAACAACCGACGAATGTTCGAGCAGGAATGGCGTGACTCGATGGAGAAGCTCGAGAGGGAGAGGTTAATGGCTGAGAAAGCTTGGAGGGAAAGAGAAGAACAGAGAAAGAAAAGACAAGATATCCGAGCTGAAGGAATGGATGCTCTCTTAACAGACCTTTTAAACAAGCTCAACCGCGAAAATAATTTATGAGACGATGATATAAAAAACGGTGCTGATTCCTGAGAATGGGATAGTTGAAGCAAAAAAGGAAGAATGTAGTTACAGCAACACTATTTTTGAAGGCATGGTAGATATAAAAAATTCAGGTTTCCTTTTTGCTTTGGGGTGGCTGATAGTACATATCACATATGCAATTTTTCACTAGTGTCTAGCCTGATTGTATGCATACAGAGATTGAACAGTTTTCTCCCAGGAATTTATATCTCTTGGAAG CTTCTTAAAGAAGCAAGCCGGAAAAGGCCGATAATGGAAAGAGGGCCTTCGTCAATCACAAATTTCCACCATTAAATTTCTCGTCGGAGTTCGCCGATGTCACCGCCGTCCACTGTTTTCACTGAAGCCGAAGCTAGAGCCCTGCAATAGTATCAACCATGACCTCGAGCGCGATGGCGGCGACGGCTCAGCAACACCAGTGGAGCGAGGAGGAGACAAGGGAGTTCATCCGGATTCGAGCCGACCTAGAGAGGGACCTGACGGTGGTTTCCACCGGAGAAGGTGCGGCGGTGAAGAAGAAGACACTGTGGGACATGGCGAGTGCAAGGATGAGAGAGCGAGGGTTTTGGAGGACCGCCTATCAGTGCAAATGCAAGTGGAAGAATCTCCTCAGTCGCTACAAGGGGAAGGAGACAACCCATAAAGAGTTTGGCTGGCAATGCCCATTTTTTGAGGAAATCCGTGCAGTATTTGCCGTAAGGGAGAAAGCTATGCACCGATTGATCCATGAACCTGAAGCAGGTTCTAGTGCAACAAAGAAAAGAGGGAGGGAGAGAAGTTTAGAAGAATATTCAGATCTCAAAGAACTTGATGAAGAAGAAAGTGAGGAGGAGATCCCAACTCAAAGCAACTCACAGAAGGGAAAGGCTATAGGAACTCACCCAGCAAAGTCTTCAAGAACAGCTGGTTCTAAAAGTTCAAGTAGCTCGGTTAGTAATGAAATCCTAGAGTTGTTGAAGGGCTTCTTTCAGTGGCAGCAGAGGATGGAAATGGAATGGAGGGAAATACTTGAGAGACATTACAACAACCGACGAATGTTCGAGCAGGAATGGCGTGACTCGATGGAGAAGCTCGAGAGGGAGAGGTTAATGGCTGAGAAAGCTTGGAGGGAAAGAGAAGAACAGAGAAAGAAAAGACAAGATATCCGAGCTGAAGGAATGGATGCTCTCTTAACAGACCTTTTAAACAAGCTCAACCGCGAAAATAATTTATGAGACGATGATATAAAAAACGGTGCTGATTCCTGAGAATGGGATAGTTGAAGCAAAAAAGGAAGAATGTAGTTACAGCAACACTATTTTTGAAGGCATGGTAGATATAAAAAATTCAGGTTTCCTTTTTGCTTTGGGGTGGCTGATAGTACATATCACATATGCAATTTTTCACTAGTGTCTAGCCTGATTGTATGCATACAGAGATTGAACAGTTTTCTCCCAGGAATTTATATCTCTTGGAAG ATGACCTCGAGCGCGATGGCGGCGACGGCTCAGCAACACCAGTGGAGCGAGGAGGAGACAAGGGAGTTCATCCGGATTCGAGCCGACCTAGAGAGGGACCTGACGGTGGTTTCCACCGGAGAAGGTGCGGCGGTGAAGAAGAAGACACTGTGGGACATGGCGAGTGCAAGGATGAGAGAGCGAGGGTTTTGGAGGACCGCCTATCAGTGCAAATGCAAGTGGAAGAATCTCCTCAGTCGCTACAAGGGGAAGGAGACAACCCATAAAGAGTTTGGCTGGCAATGCCCATTTTTTGAGGAAATCCGTGCAGTATTTGCCGTAAGGGAGAAAGCTATGCACCGATTGATCCATGAACCTGAAGCAGGTTCTAGTGCAACAAAGAAAAGAGGGAGGGAGAGAAGTTTAGAAGAATATTCAGATCTCAAAGAACTTGATGAAGAAGAAAGTGAGGAGGAGATCCCAACTCAAAGCAACTCACAGAAGGGAAAGGCTATAGGAACTCACCCAGCAAAGTCTTCAAGAACAGCTGGTTCTAAAAGTTCAAGTAGCTCGGTTAGTAATGAAATCCTAGAGTTGTTGAAGGGCTTCTTTCAGTGGCAGCAGAGGATGGAAATGGAATGGAGGGAAATACTTGAGAGACATTACAACAACCGACGAATGTTCGAGCAGGAATGGCGTGACTCGATGGAGAAGCTCGAGAGGGAGAGGTTAATGGCTGAGAAAGCTTGGAGGGAAAGAGAAGAACAGAGAAAGAAAAGACAAGATATCCGAGCTGAAGGAATGGATGCTCTCTTAACAGACCTTTTAAACAAGCTCAACCGCGAAAATAATTTATGA MTSSAMAATAQQHQWSEEETREFIRIRADLERDLTVVSTGEGAAVKKKTLWDMASARMRERGFWRTAYQCKCKWKNLLSRYKGKETTHKEFGWQCPFFEEIRAVFAVREKAMHRLIHEPEAGSSATKKRGRERSLEEYSDLKELDEEESEEEIPTQSNSQKGKAIGTHPAKSSRTAGSKSSSSSVSNEILELLKGFFQWQQRMEMEWREILERHYNNRRMFEQEWRDSMEKLERERLMAEKAWREREEQRKKRQDIRAEGMDALLTDLLNKLNRENNL Homology
BLAST of Carg13158 vs. NCBI nr
Match: KAG7031071.1 (Trihelix transcription factor GT-3a [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 531.2 bits (1367), Expect = 5.4e-147 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of Carg13158 vs. NCBI nr
Match: KAG6600412.1 (Trihelix transcription factor GT-3a, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 529.3 bits (1362), Expect = 2.1e-146 Identity = 276/278 (99.28%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of Carg13158 vs. NCBI nr
Match: XP_022942274.1 (trihelix transcription factor GT-3b-like [Cucurbita moschata]) HSP 1 Score: 526.2 bits (1354), Expect = 1.8e-145 Identity = 275/278 (98.92%), Postives = 277/278 (99.64%), Query Frame = 0
BLAST of Carg13158 vs. NCBI nr
Match: XP_022982252.1 (trihelix transcription factor GT-3b-like [Cucurbita maxima]) HSP 1 Score: 510.4 bits (1313), Expect = 9.9e-141 Identity = 268/278 (96.40%), Postives = 271/278 (97.48%), Query Frame = 0
BLAST of Carg13158 vs. NCBI nr
Match: XP_023512151.1 (trihelix transcription factor GT-3b-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 508.4 bits (1308), Expect = 3.8e-140 Identity = 269/279 (96.42%), Postives = 272/279 (97.49%), Query Frame = 0
BLAST of Carg13158 vs. ExPASy Swiss-Prot
Match: O80450 (Trihelix transcription factor GT-3b OS=Arabidopsis thaliana OX=3702 GN=GT-3B PE=1 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 1.5e-35 Identity = 116/277 (41.88%), Postives = 162/277 (58.48%), Query Frame = 0
BLAST of Carg13158 vs. ExPASy Swiss-Prot
Match: Q9SDW0 (Trihelix transcription factor GT-3a OS=Arabidopsis thaliana OX=3702 GN=GT-3A PE=1 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 6.7e-31 Identity = 96/274 (35.04%), Postives = 158/274 (57.66%), Query Frame = 0
BLAST of Carg13158 vs. ExPASy Swiss-Prot
Match: Q39117 (Trihelix transcription factor GT-2 OS=Arabidopsis thaliana OX=3702 GN=GT-2 PE=1 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 3.1e-04 Identity = 43/150 (28.67%), Postives = 72/150 (48.00%), Query Frame = 0
BLAST of Carg13158 vs. ExPASy TrEMBL
Match: A0A6J1FQU1 (trihelix transcription factor GT-3b-like OS=Cucurbita moschata OX=3662 GN=LOC111447368 PE=4 SV=1) HSP 1 Score: 526.2 bits (1354), Expect = 8.5e-146 Identity = 275/278 (98.92%), Postives = 277/278 (99.64%), Query Frame = 0
BLAST of Carg13158 vs. ExPASy TrEMBL
Match: A0A6J1IW60 (trihelix transcription factor GT-3b-like OS=Cucurbita maxima OX=3661 GN=LOC111481131 PE=4 SV=1) HSP 1 Score: 510.4 bits (1313), Expect = 4.8e-141 Identity = 268/278 (96.40%), Postives = 271/278 (97.48%), Query Frame = 0
BLAST of Carg13158 vs. ExPASy TrEMBL
Match: A0A6J1C4P6 (trihelix transcription factor GT-3b-like OS=Momordica charantia OX=3673 GN=LOC111008249 PE=4 SV=1) HSP 1 Score: 436.0 bits (1120), Expect = 1.2e-118 Identity = 234/279 (83.87%), Postives = 251/279 (89.96%), Query Frame = 0
BLAST of Carg13158 vs. ExPASy TrEMBL
Match: A0A5D3CYD0 (Trihelix transcription factor GT-3b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003130 PE=4 SV=1) HSP 1 Score: 419.9 bits (1078), Expect = 8.6e-114 Identity = 224/279 (80.29%), Postives = 245/279 (87.81%), Query Frame = 0
BLAST of Carg13158 vs. ExPASy TrEMBL
Match: A0A1S3BSN5 (trihelix transcription factor GT-3b-like OS=Cucumis melo OX=3656 GN=LOC103493063 PE=4 SV=1) HSP 1 Score: 419.9 bits (1078), Expect = 8.6e-114 Identity = 224/279 (80.29%), Postives = 245/279 (87.81%), Query Frame = 0
BLAST of Carg13158 vs. TAIR 10
Match: AT2G38250.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 151.4 bits (381), Expect = 1.1e-36 Identity = 116/277 (41.88%), Postives = 162/277 (58.48%), Query Frame = 0
BLAST of Carg13158 vs. TAIR 10
Match: AT5G01380.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 136.0 bits (341), Expect = 4.7e-32 Identity = 96/274 (35.04%), Postives = 158/274 (57.66%), Query Frame = 0
BLAST of Carg13158 vs. TAIR 10
Match: AT5G47660.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 52.8 bits (125), Expect = 5.3e-07 Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 0
BLAST of Carg13158 vs. TAIR 10
Match: AT3G25990.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 51.2 bits (121), Expect = 1.5e-06 Identity = 30/101 (29.70%), Postives = 54/101 (53.47%), Query Frame = 0
BLAST of Carg13158 vs. TAIR 10
Match: AT1G76890.2 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 47.4 bits (111), Expect = 2.2e-05 Identity = 43/150 (28.67%), Postives = 72/150 (48.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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