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Carg13143 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCGCATCTGGCTCATGGTGTTGCTCATGGAGCCGGATATCCTCCTCCTGGGGGATATCCTCCGCCTGGAGGGTATCCACCACCTGGAGGGTATCCACCACCTGGAGGGTATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCCGCCCAAGGTTACCCCCCAGCTGGCTATCCTCCTGGTGCATATCCTGGACCCTCTGCTCCACACCATTCAGGTATTTATCCTATTTTTACATATAATCGTCTGGAAAACTTGTTAGATCATTAGTTCGTTATTTTTATTAAGTAAGGTTTATAATTTCGATTACCTCGACCGAAAGCTGCTGTAAGCAACAGAATTGTTTTGAAGCAAAACTTCAGTAAAATTTCCCAGGAACATTGGAGTATCCTAATCCTGTTTATGGTTAGATTGCATAACTTTTATACAGTTACTGATTCCAAATATTCTTAAATGCAGGCCACGGTGTAGCAGGAATGCTGGCAGGTGGTGCTGCCGCTGCAGCAGCTGCATATGGAGCTCACCATGTCGCCCATGGTGCTGGTCATTACCCCCACGGCGTTGCTCAATATGGTCATGGTCATGGTTATGGTCATGGTCATGGTCATGGTGGAAAATTCAAGCACCATGGAAAGTTCAAGCAGGGGAAGTTTGGGAAGCACAAACATGGGAAGCATGGTGGTGGCAAATTCAAGAAGTGGAAGTGATTTTTCTGCCATCACATTTCACCACCGACCCTTCTTCTTCAGTGGCTTCCAAGAATGGCCTCGGTACAGATGGTAGGGTACCATCTTCTTCTCTAATCCCTGTTATGTCCAGAGAACTTTGGATGTTGTTATTTTACTCTTGTTATCTTAACTGCTGTTTAATGCCTTCTGTACTCTGCTTCTGGACATCAATAATCTGGATCTTTTTTCGTTTTCTTGTCGACCTCTTTCTTTCAATTTCCCATTTTTTTTTGGATATGAGAACTGGGTCGAAACGAAAGATAGAGAATGGGAATTTTGGGCCCAACACTTGCGTGATTGGGGTATTGGGTCATGTATTTTGAATATGTTTTAATTGAATTAGAAATTATGTGTGGACATCATCATCGTAATGGAGTTTCTTATTCAAGATCGTTTCAACTGAGGAGGGGGACCAGGAAGTTTTCGTATAAAACTATGGTGGTAGGTCTCCTGATGAGAGTGCGAACTTCCTTGTCAGGTAAGTTCCAACCCGCACGAAACATCATAAATCCAGACAAAGA ATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCGCATCTGGCTCATGGTGTTGCTCATGGAGCCGGATATCCTCCTCCTGGGGGATATCCTCCGCCTGGAGGGTATCCACCACCTGGAGGGTATCCACCACCTGGAGGGTATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCCGCCCAAGGTTACCCCCCAGCTGGCTATCCTCCTGGTGCATATCCTGGACCCTCTGCTCCACACCATTCAGGCCACGGTGTAGCAGGAATGCTGGCAGGTGGTGCTGCCGCTGCAGCAGCTGCATATGGAGCTCACCATGTCGCCCATGGTGCTGGTCATTACCCCCACGGCGTTGCTCAATATGGTCATGGTCATGGTTATGGTCATGGTCATGGTCATGGTGGAAAATTCAAGCACCATGGAAAGTTCAAGCAGGGGAAGTTTGGGAAGCACAAACATGGGAAGCATGGTGGTGGCAAATTCAAGAAGTGGAAGTGATTTTTCTGCCATCACATTTCACCACCGACCCTTCTTCTTCAGTGGCTTCCAAGAATGGCCTCGGTACAGATGGTAGGGTACCATCTTCTTCTCTAATCCCTGTTATGTCCAGAGAACTTTGGATGTTGTTATTTTACTCTTGTTATCTTAACTGCTGTTTAATGCCTTCTGTACTCTGCTTCTGGACATCAATAATCTGGATCTTTTTTCGTTTTCTTGTCGACCTCTTTCTTTCAATTTCCCATTTTTTTTTGGATATGAGAACTGGGTCGAAACGAAAGATAGAGAATGGGAATTTTGGGCCCAACACTTGCGTGATTGGGGTATTGGGTCATGTATTTTGAATATGTTTTAATTGAATTAGAAATTATGTGTGGACATCATCATCGTAATGGAGTTTCTTATTCAAGATCGTTTCAACTGAGGAGGGGGACCAGGAAGTTTTCGTATAAAACTATGGTGGTAGGTCTCCTGATGAGAGTGCGAACTTCCTTGTCAGGTAAGTTCCAACCCGCACGAAACATCATAAATCCAGACAAAGA ATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCGCATCTGGCTCATGGTGTTGCTCATGGAGCCGGATATCCTCCTCCTGGGGGATATCCTCCGCCTGGAGGGTATCCACCACCTGGAGGGTATCCACCACCTGGAGGGTATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCCGCCCAAGGTTACCCCCCAGCTGGCTATCCTCCTGGTGCATATCCTGGACCCTCTGCTCCACACCATTCAGGCCACGGTGTAGCAGGAATGCTGGCAGGTGGTGCTGCCGCTGCAGCAGCTGCATATGGAGCTCACCATGTCGCCCATGGTGCTGGTCATTACCCCCACGGCGTTGCTCAATATGGTCATGGTCATGGTTATGGTCATGGTCATGGTCATGGTGGAAAATTCAAGCACCATGGAAAGTTCAAGCAGGGGAAGTTTGGGAAGCACAAACATGGGAAGCATGGTGGTGGCAAATTCAAGAAGTGGAAGTGA MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPPGGYPPPGGYPPPGGYPPPGGYPPSHGYPPQGYPPAQGYPPAGYPPGAYPGPSAPHHSGHGVAGMLAGGAAAAAAAYGAHHVAHGAGHYPHGVAQYGHGHGYGHGHGHGGKFKHHGKFKQGKFGKHKHGKHGGGKFKKWK Homology
BLAST of Carg13143 vs. NCBI nr
Match: XP_022942872.1 (glycine-rich protein A3-like [Cucurbita moschata] >KAG6600433.1 hypothetical protein SDJN03_05666, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031084.1 hypothetical protein SDJN02_05123, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 334.3 bits (856), Expect = 6.0e-88 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
BLAST of Carg13143 vs. NCBI nr
Match: XP_023515197.1 (glycine-rich protein A3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86 Identity = 169/171 (98.83%), Postives = 171/171 (100.00%), Query Frame = 0
BLAST of Carg13143 vs. NCBI nr
Match: XP_022983060.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022983068.1 glycine-rich protein A3-like [Cucurbita maxima]) HSP 1 Score: 320.9 bits (821), Expect = 6.9e-84 Identity = 167/171 (97.66%), Postives = 167/171 (97.66%), Query Frame = 0
BLAST of Carg13143 vs. NCBI nr
Match: XP_004150942.2 (glycine-rich protein A3 [Cucumis sativus] >KGN53470.1 hypothetical protein Csa_014664 [Cucumis sativus]) HSP 1 Score: 281.6 bits (719), Expect = 4.6e-72 Identity = 158/180 (87.78%), Postives = 159/180 (88.33%), Query Frame = 0
BLAST of Carg13143 vs. NCBI nr
Match: XP_022984947.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022984948.1 glycine-rich protein A3-like [Cucurbita maxima] >XP_022984949.1 glycine-rich protein A3-like [Cucurbita maxima] >XP_022984950.1 glycine-rich protein A3-like [Cucurbita maxima]) HSP 1 Score: 280.8 bits (717), Expect = 7.9e-72 Identity = 156/181 (86.19%), Postives = 156/181 (86.19%), Query Frame = 0
BLAST of Carg13143 vs. ExPASy Swiss-Prot
Match: P37705 (Glycine-rich protein A3 OS=Daucus carota OX=4039 PE=2 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 2.0e-25 Identity = 94/146 (64.38%), Postives = 103/146 (70.55%), Query Frame = 0
BLAST of Carg13143 vs. ExPASy Swiss-Prot
Match: P24639 (Annexin A7 OS=Dictyostelium discoideum OX=44689 GN=nxnA PE=1 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09 Identity = 42/70 (60.00%), Postives = 44/70 (62.86%), Query Frame = 0
BLAST of Carg13143 vs. ExPASy Swiss-Prot
Match: O16005 (Rhodopsin OS=Sepia officinalis OX=6610 GN=RHO PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07 Identity = 48/90 (53.33%), Postives = 53/90 (58.89%), Query Frame = 0
BLAST of Carg13143 vs. ExPASy Swiss-Prot
Match: P09241 (Rhodopsin OS=Enteroctopus dofleini OX=267067 GN=RHO PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07 Identity = 46/85 (54.12%), Postives = 51/85 (60.00%), Query Frame = 0
BLAST of Carg13143 vs. ExPASy Swiss-Prot
Match: Q8LCL8 (Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=At3g57160 PE=3 SV=2) HSP 1 Score: 45.4 bits (106), Expect = 7.3e-04 Identity = 44/80 (55.00%), Postives = 45/80 (56.25%), Query Frame = 0
BLAST of Carg13143 vs. ExPASy TrEMBL
Match: A0A6J1FRG4 (glycine-rich protein A3-like OS=Cucurbita moschata OX=3662 GN=LOC111447772 PE=4 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 2.9e-88 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
BLAST of Carg13143 vs. ExPASy TrEMBL
Match: A0A6J1J4M6 (glycine-rich protein A3-like OS=Cucurbita maxima OX=3661 GN=LOC111481715 PE=4 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 3.3e-84 Identity = 167/171 (97.66%), Postives = 167/171 (97.66%), Query Frame = 0
BLAST of Carg13143 vs. ExPASy TrEMBL
Match: A0A0A0KV55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056610 PE=4 SV=1) HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72 Identity = 158/180 (87.78%), Postives = 159/180 (88.33%), Query Frame = 0
BLAST of Carg13143 vs. ExPASy TrEMBL
Match: A0A6J1J3I6 (glycine-rich protein A3-like OS=Cucurbita maxima OX=3661 GN=LOC111483065 PE=4 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 3.8e-72 Identity = 156/181 (86.19%), Postives = 156/181 (86.19%), Query Frame = 0
BLAST of Carg13143 vs. ExPASy TrEMBL
Match: A0A6J1ETR5 (glycine-rich protein A3-like OS=Cucurbita moschata OX=3662 GN=LOC111437642 PE=4 SV=1) HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71 Identity = 155/181 (85.64%), Postives = 155/181 (85.64%), Query Frame = 0
BLAST of Carg13143 vs. TAIR 10
Match: AT4G19200.1 (proline-rich family protein ) HSP 1 Score: 137.1 bits (344), Expect = 1.3e-32 Identity = 113/185 (61.08%), Postives = 120/185 (64.86%), Query Frame = 0
BLAST of Carg13143 vs. TAIR 10
Match: AT5G45350.1 (proline-rich family protein ) HSP 1 Score: 128.3 bits (321), Expect = 6.1e-30 Identity = 110/196 (56.12%), Postives = 120/196 (61.22%), Query Frame = 0
BLAST of Carg13143 vs. TAIR 10
Match: AT5G45350.2 (proline-rich family protein ) HSP 1 Score: 128.3 bits (321), Expect = 6.1e-30 Identity = 110/196 (56.12%), Postives = 120/196 (61.22%), Query Frame = 0
BLAST of Carg13143 vs. TAIR 10
Match: AT5G17650.1 (glycine/proline-rich protein ) HSP 1 Score: 118.6 bits (296), Expect = 4.8e-27 Identity = 104/186 (55.91%), Postives = 116/186 (62.37%), Query Frame = 0
BLAST of Carg13143 vs. TAIR 10
Match: AT1G31750.1 (proline-rich family protein ) HSP 1 Score: 112.8 bits (281), Expect = 2.6e-25 Identity = 94/171 (54.97%), Postives = 101/171 (59.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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