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Carg13089 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTTCTCTACAAAAAGCTTATTCTTCGGTTCTGCAAAATTCTTCCATTCCAACTCTCCACCGAGTTTCTGCTTTTCTCTGGCTTCGTTTTTGTATCTCTCTACTTGTGAATTGAGGCTTGCGTTCAAGCAAACGGCAATGGGCTGTGTTGGATCGTCGCAGACCAACGGAGATGGTGAGGTTCACTTCGCTTCTGTGATTCTTTCTTTGTTTATTGGAGATTTTTTGTTCTATGTTTGCCTGCTGTGTTGGCTATGAGGAATATAGATGATAATCAATGCAAGTTGATTTGTTGGGAGAGCGGGAGTGTTGGTCTTCTGGTATTGAATTTGTTCGGAATGGATTGGATTGGTCTTGATTTTCTTTGTTTGTTGCGTCTGTTTTCTTGATTTTCATTCTGTGGTTATCGCGTTGCTCGATTGTGTGCGTTTGTTTGTTTTGAGACTATGACAGTGGTTCGAAGCCTCGAGATTCTTTAACTTTACTTGCATTAGTTAGGATAATGAATTTTCAATTTAGATAATTGAGTTAAATTTTTGAAATAATTTCATCCTTCATTTATTTTGAGAATGATGGATTTTTTTTAAAAGGTTGATTAGAATTACTGCTGGCGTATTTATTGACATTTGCTGCTGGTGATTCAAATTCTACTAGTGATTCTTTCAGTTTCGGATCAATGAAGTCATCATGAATTGCATTCAAAATCTTGGCATATTTGTGGCTAAAGAATAGTTTCGCATTCAAAGAATTTGATTGGATTAAAAGTGGAGTTGTGGTATTAGAACATTACGACTAAAATTTCAGCAACTAACATATGAATGGACGGTATCTAATATTTCTACTTTATACTGCAATCAAAACGAAAAATTTGTAGAAGCTCTGTTACAACATGCTAGTTTGCGGGATGACAATTGTCTTTTGACTCTTTTCTAATCTGCAAAATGGCTAAGGTATCGCTGTACACGAATTCCTCCCTTCCCCGATCTCTATTCTCATAACAAATTCTGAAAAATAACAGGAATTGCTGAATTCTTGTATAGTAGGAAGAAAACACTTCTGAGGATACTGAAACGGAAAGAAAGCACTTAAAGAAAGTAGAGAAAATGAAAGAAAAAATAGGAAAATTTTAGGACGAAGCTTTCTAATTCTCCTTGTGTTGTTAAAGTACTGAAGGTTTAGGAATTTTATTTGAACTTTTCAAGGCTTCCCTTTGTTATCAGTGCTGCTACACTTGAACATGGTTTAGTTGGTTTGTACTTTATTCAAGCCATTTGACATATGACTGAAACTGCTTCTTTGTGTAGGATCCACAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCACGCAGCTACGGGATGAGTTTTGGGACACTGCACCTCACTATGGCGGCCGAAATGGTAGTCCTGTCTCTAACATATTTGTGCCAGTGTTAAAGTCTTCATGGTTTTTTAGAGGTTAGCTGATCAAAAGAATTACTGAGAGTTTAGCTAATTAGGAATAAGCCTTACAGATTATATCATTCATGATTTCTGATTTCAGAATCTACTTTCTTTCTCGATAAAAATGTAAAACTACGGATAGATGACCATCACATTCATGGAAAAGGGTGAATACTGTAGTTGCAGGGGATCCAATGAAGGTTGGGACGAATTATCTCTTGGATATGACAATTATGTCATTCACAGCTGTATGCACAATTATTGGACCTTTTTCCAATTTCTAGGATCCTACCATTTGTCTTCCCTGTTTCCTAATAAACTAAGTTCTCGGTTTGGGAGATAAGGTTTCCTATTTTTGTGCCGATTACAGATTGCCGTTACCAACATCCAAGAATTTCATTTCACATGTAGGCTTTTCCAATTATTTCATTTCGGTTTGTGCCCATTTCGAAGGGGGATGCTTCTGGGAAGAAATGTGCTTCAGAGAGTTCGTTAAAGTTTTTGGTCCAATTGATTTAGTTTTTTTTTTTTATTACTTAGTTAACCATTAAGTATTTTATGAATATTGGCTTTTAGTTCTTGAATGGATACATCTTTAGAATCAGTTTCAATTGTAAGCCAAGATTTCTTTTGAGGACTCTCTGTGAGAGCTTAGGTTACACCAAAATGATTTTCTTTTTTCTTATGCTTAGAGTACTCATTATGTGATTTTACCTAGGATTATGGAACTTGATAACTATAGAAACTTGTGTCTGGACTTGATCTTTTGTTGGTTTATGTTTTGGGCCGGCTTCTTGTTATTTTGTTTTCTTTCTTCGTGTTTCTTTTCCCTTTTCTTGTGCCTTTTAGTGGCCTTTAGTATTTTCGTAAAAAAGTTTCCTGAAAGCCCATTGATAATCGCCACAAAATTTTGAAATGGCCTGCCTCATTCGAATTTCTCTTCGCTCATAATGTATCTTGCAATCCGTTATTGATTTGAGCTAAGAGACATTAGTTATTATTTCTCTCCAACCTTCACCTTTCACTTCCCCCGACTGATTTTTCCCCATTGCATACTAGATTGAAAGCAATGCTATTTGTAGTTCAAAGTCAAACTCTTTTGGCCCGAACTTTGTCCTGGACTACATTCTTGCTGTTTGATGCAAACTTTAACCTTTATGAAGGTTTCTGATACACATCACTATTTTCTGTTAATTTTCACTATCTTATTAAATGCCTTTTTCCAAGAGAAAACAACTTGATCTTAGTTGCCAATTGAAACGTTAGATCCCCGGGTATATGGTTGTTGGAAATAGCCAAATAAAGTGTCAGTTCCAAAGATCCTACAATCTTCTACTGGTCAATCCTCCAACGTATCTCCCCAGGATATAGAGTGAGGGTATCTCTTTGGAATCCCGAACAAATATGGAAATGATGTAGGATTTTGTACCAAAATCACAATTCACAAGAGAAAAAGATGATTGACTAATTCACAGGCCCTGCAATAAAGAGAACACTAATATAATGAGAGGGCACCATTATTTAGTTTTCTGAAAGTCAATGTATGAAAAGGATCAGAAGGCAGGCTTCTAATCGAGAAAATTAGGGAGGATCAAAGACAAATCATGAGAAACATGAATAATAAAGACGCCAAGTCTTTCTTCTTTGATTTTAAATTGGCGTCTATATGTAACTCACCTATTGGTGTTTGAATTTTTTACTCCGTTATTTCATTCATCAATTAAATTTGTCTCTTCTCTAGAAAAAGACTTAACCAAACAACCGTGATTTGAAAATTGTGTTAAAAGACATTGAAAGGTTTGGACTTCTAAGATGAGTTAGAAGTGAGCACAATTTCTAAAATAGCATTCTAGAACTTCCAATTCATCTAAAAGTATTTCAATGTCTCTTAGAAGAAAGGAAGATCAAGCCTCTCCAGTCTCTATCTTCTTTTATTTTATTTCCATCCTTGGGCTACTACACACCTTCAAGTCTTCAACATTGACCTCACCTTTCTTATACATTACTTTGTCCCTCACGGCCTGCTTACTAAAATTTACCAACAATTTTCTTTGATATCAGAGATTTGGGATGCACTACGAGCAGCTGCTGAAGCAGAGCTATCTCTAGCGCAAGCAATCATAGACAGTGCTGGGGTCATCGTTCAAAATGCAGATTTAACAGTTTGTTACGATGAGAGAGGTCCATACCATTGCTTCATTTAA GTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTTCTCTACAAAAAGCTTATTCTTCGGTTCTGCAAAATTCTTCCATTCCAACTCTCCACCGAGTTTCTGCTTTTCTCTGGCTTCGTTTTTGTATCTCTCTACTTGTGAATTGAGGCTTGCGTTCAAGCAAACGGCAATGGGCTGTGTTGGATCGTCGCAGACCAACGGAGATGGATCCACAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCACGCAGCTACGGGATGAGTTTTGGGACACTGCACCTCACTATGGCGGCCGAAATGGTAGTCCTGTCTCTAACATATTTGTGCCAGTGTTAAAGTCTTCATGGTTTTTTAGAGAGATTTGGGATGCACTACGAGCAGCTGCTGAAGCAGAGCTATCTCTAGCGCAAGCAATCATAGACAGTGCTGGGGTCATCGTTCAAAATGCAGATTTAACAGTTTGTTACGATGAGAGAGGTCCATACCATTGCTTCATTTAA GTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTTCTCTACAAAAAGCTTATTCTTCGGTTCTGCAAAATTCTTCCATTCCAACTCTCCACCGAGTTTCTGCTTTTCTCTGGCTTCGTTTTTGTATCTCTCTACTTGTGAATTGAGGCTTGCGTTCAAGCAAACGGCAATGGGCTGTGTTGGATCGTCGCAGACCAACGGAGATGGATCCACAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCACGCAGCTACGGGATGAGTTTTGGGACACTGCACCTCACTATGGCGGCCGAAATGGTAGTCCTGTCTCTAACATATTTGTGCCAGTGTTAAAGTCTTCATGGTTTTTTAGAGAGATTTGGGATGCACTACGAGCAGCTGCTGAAGCAGAGCTATCTCTAGCGCAAGCAATCATAGACAGTGCTGGGGTCATCGTTCAAAATGCAGATTTAACAGTTTGTTACGATGAGAGAGGTCCATACCATTGCTTCATTTAA VSSSSSSSSSSSSSSSSSSFSTKSLFFGSAKFFHSNSPPSFCFSLASFLYLSTCELRLAFKQTAMGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGPYHCFI Homology
BLAST of Carg13089 vs. NCBI nr
Match: KAG7031138.1 (Ubiquitin domain-containing protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 349.4 bits (895), Expect = 1.9e-92 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
BLAST of Carg13089 vs. NCBI nr
Match: XP_022983333.1 (ubiquitin domain-containing protein 1-like isoform X1 [Cucurbita maxima] >XP_023527299.1 ubiquitin domain-containing protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6600497.1 Ubiquitin domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 238.0 bits (606), Expect = 6.3e-59 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Carg13089 vs. NCBI nr
Match: XP_022942916.1 (ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022983339.1 ubiquitin domain-containing protein 1-like isoform X2 [Cucurbita maxima] >XP_023527305.1 ubiquitin domain-containing protein 1-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 186.4 bits (472), Expect = 2.2e-43 Identity = 94/113 (83.19%), Postives = 94/113 (83.19%), Query Frame = 0
BLAST of Carg13089 vs. NCBI nr
Match: XP_022142761.1 (ubiquitin domain-containing protein 1-like [Momordica charantia] >XP_022142762.1 ubiquitin domain-containing protein 1-like [Momordica charantia]) HSP 1 Score: 177.9 bits (450), Expect = 7.7e-41 Identity = 89/113 (78.76%), Postives = 91/113 (80.53%), Query Frame = 0
BLAST of Carg13089 vs. NCBI nr
Match: XP_038882682.1 (ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882691.1 ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882701.1 ubiquitin domain-containing protein 2-like [Benincasa hispida] >XP_038882708.1 ubiquitin domain-containing protein 2-like [Benincasa hispida]) HSP 1 Score: 175.3 bits (443), Expect = 5.0e-40 Identity = 88/113 (77.88%), Postives = 90/113 (79.65%), Query Frame = 0
BLAST of Carg13089 vs. ExPASy Swiss-Prot
Match: Q4V8W7 (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 9.8e-15 Identity = 54/137 (39.42%), Postives = 69/137 (50.36%), Query Frame = 0
BLAST of Carg13089 vs. ExPASy Swiss-Prot
Match: Q640W6 (Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.9e-14 Identity = 55/139 (39.57%), Postives = 68/139 (48.92%), Query Frame = 0
BLAST of Carg13089 vs. ExPASy Swiss-Prot
Match: Q6DG43 (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.9e-14 Identity = 54/139 (38.85%), Postives = 69/139 (49.64%), Query Frame = 0
BLAST of Carg13089 vs. ExPASy Swiss-Prot
Match: Q6PGH0 (Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.9e-14 Identity = 55/139 (39.57%), Postives = 68/139 (48.92%), Query Frame = 0
BLAST of Carg13089 vs. ExPASy Swiss-Prot
Match: Q5EAE3 (Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 8.3e-14 Identity = 52/139 (37.41%), Postives = 66/139 (47.48%), Query Frame = 0
BLAST of Carg13089 vs. ExPASy TrEMBL
Match: A0A6J1J7G7 (ubiquitin domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481944 PE=4 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 3.0e-59 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Carg13089 vs. ExPASy TrEMBL
Match: A0A6J1J725 (ubiquitin domain-containing protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481944 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43 Identity = 94/113 (83.19%), Postives = 94/113 (83.19%), Query Frame = 0
BLAST of Carg13089 vs. ExPASy TrEMBL
Match: A0A6J1FQA3 (ubiquitin domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447800 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43 Identity = 94/113 (83.19%), Postives = 94/113 (83.19%), Query Frame = 0
BLAST of Carg13089 vs. ExPASy TrEMBL
Match: A0A6J1CN58 (ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012801 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 3.7e-41 Identity = 89/113 (78.76%), Postives = 91/113 (80.53%), Query Frame = 0
BLAST of Carg13089 vs. ExPASy TrEMBL
Match: A0A6J1ETK8 (ubiquitin domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111437602 PE=4 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 7.0e-40 Identity = 86/113 (76.11%), Postives = 90/113 (79.65%), Query Frame = 0
BLAST of Carg13089 vs. TAIR 10
Match: AT1G53400.1 (Ubiquitin domain-containing protein ) HSP 1 Score: 158.3 bits (399), Expect = 5.9e-39 Identity = 76/113 (67.26%), Postives = 87/113 (76.99%), Query Frame = 0
BLAST of Carg13089 vs. TAIR 10
Match: AT5G45740.1 (Ubiquitin domain-containing protein ) HSP 1 Score: 141.0 bits (354), Expect = 9.7e-34 Identity = 69/115 (60.00%), Postives = 82/115 (71.30%), Query Frame = 0
BLAST of Carg13089 vs. TAIR 10
Match: AT1G16960.1 (Ubiquitin domain-containing protein ) HSP 1 Score: 135.6 bits (340), Expect = 4.1e-32 Identity = 68/114 (59.65%), Postives = 83/114 (72.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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