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Carg13088 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAGAAAAAAAGCGATTATGTTTACATTTTCGAACAGCCGTGGCTTAGCTTTCTTCTCACAAAGTGAGGCTAAGGAGGGGGCAGAGTAGAAATCGGAAAGGAAGAACAAAATCAAAATAAAGAAAGGATTAAGAGGGGAAACTTTTTGTTAACTCAAATCCAGATTGTTACCTCTTCTTCTGGAGCTGTCGTTTGTGATGCTTTGTTCGTTTCTGCAGCCGAAGAGCCGAATAGAGCTAACCCCACCTCGGTATTCTGCCAATCAAAACTCCATAGCTACTGATTCTCTCACTACCCATCTGCAGAAAATGGCAGAAATCGGTTTCTACTTGAATCGCTGAGCCCAAGCTCCCGATCTCCCTCTCTCAATTGGCTCAATTTGTCGGCTGTGATATGAAGAACTCCTTTACATTTGTCAGTTTCATACTAGTTTTACTCGTTTTCCCTTTTCAAATCCAAGTTCATGCTACTCCTGCAGGTGAGTGTCTTCTTTCATCGTTATTTTCGCTCTATTTGGTTTGATGGGTCTGTTCTAATTAGCTTAAATTCTTCACTTATCTTACCCAAAGTGTGTTGGAATGGCTACTTATGGAGTTTTCTGGTCTGATTCTTGGAATGATTTGTATCTTTTGAGAGTGATTTGGCTCTTTTGTTGATGTTTTTTGAGGATATTTTGTTGTTCTTCTCAGGACCATTGATTAAACACTTGTCTTCTATTGTCAAATGGACTAGGTCTTCATATAAAGCCCCCCCATCAGGTGGTTGTGAAAAAACTATCTCAGTGTTTTTGGTACTTACTGGTTACCTTTGTTCATTGTGGCTGTCGAATTTTAATATCATTAAGCTTCTGTTTGGCAGATGGTAATGTCCTGCAATTTGAGAATGGGTACTTGGTTGAAACTGTAGTGGAGGGAAATGAAATTGGAGTTCTTCCACATAAGATCCATGTCTCGAAGGAGGGCGAGCTTTTCGTCGTTGATTCGGTTAATAGCAATATTGTGAAGATCACCCCTCCATTATCCAAATGTATGATGCCTTTCCCCGGTAGTTTCTATTGGCAATGATAATCTAGATTAACCCCCGTTCATTTTTTTCACTGTCGATTTGGTTCGTAGCAATATTATGCAGATTACCCCGTTATCCCAATGTACAATGCAGTTCATCTCGACGTTTCCATGTTTTTTGTTCATATGCAGTCCTTTGTATTGAAAATGGTAGTCTACATTTAAACTTGCAGCGTTTCGTATTTAGTATTGAAAGCAAATGCCGAGCCTCTGAATTTGCTACTTGATATTTTAGAAATGGTGATTTTGATTCAAGTACAAGATGTTATACTTTATTCTCATGTCTGATACAAAGCGTCGTTCATTGGAATCCATCGAGTCATCATGGTCTGGTTTCGGTTTCAGTTACATGAGTTTTGTCTCTGATCTGATGCCGAAAGAACACATTATTCCTTCCTATGCCTTTTAGTGCTTTTATCTGAAAAAAAAATAGAAAGTGAAAGCTTATGCACGTGGTGATGATTCATATTTGTTGTTAAACCTTTGAAATCTTTTCATTTATGAATTACTAACTTTATTCCACTTTTCACTTCTGTTATTCTGATTGTCTTCTCAGATACTAGAGCAAGATTGGTTGCTGGGTCGTTTCAAAGCCACACGGGGCATGTTGATGGAAAACCAAACGACGCTCGTTTTAATCATCCAAAGGGTGTAACCGTGGACGATAGAGGGAATGTGTATGTTGCTGATACCTTGAATTTGGCCATCAGAAAGATTGGAGATGCTGGTAATTGATGCATTCCTATTGGATTAACAAGTAACACTTATTTCTATGAGACCTAATAGTTATAACCAAGACATGAGCGTGTTAAGACTGTATATAAAAGATTAATTATATATGTAACTCACCGCTAACAGATATTAACCGCTTTGTCCTGTTACGTATCGCCGTCAGCTTCATGATTTTAAAACGCGTTTGCTTGGGAGAGGTTTCCACACCTTTATAAGGAATGCTTCATTCTCCACTCCAATCGATGTGGGATCTCACAAACTACCCTCTTGGGGGCCCAACATCTTCGTTGGCACACCGTCTGGTGTCTAGCTCTAATACCATTTGTAACAACCCAAGCCCACCACTAATAGATATTATCCACTTTGGCCCGTTATGTATCGCCATCAGCCTCACGATTTTTTTAAGATGTGTCTTCTAGGTAGAGGCTTCCACACCCTTATAAGGAATGTTTCGTTCTCCTCTCCAACCGATGTGAGATCTCACAGTATATAACATATTGTCCAAGTTTTCTAGTATAAGGGTAGTTTTACACGGTAATAACAAAACATACATTACTTGTTTAGTCGAAAACATTTGCAATCAAGGCCGAACGTTTTACTTTTTATGACTTGAGATCCTTGTTCTGAAAAATCTAAGAGAGAAGCATATGTGACCATTCATCTTTATATATAAAGAAGCATATGATAGTTAAAATTCTTTTGCAGGTGTGACAACCATTGCAGGGGGCAAGTCAAATGTCGCAGGCTACAGAGATGGACCAGGTGAAGATGCGAAGTTCTCAAACGATTTTGATGTAATGTACATCCGATCTACTTGTTCCTTGTTAGTTATTGACCGTGGAAATGCTGCGATTCGGCAAATATTTCTAAATCTGGAGGATTGCGAATATCAAGATAGTTCAATTTCCAACAGTGGTATGGAACATCTCCTTGTGTTGTGTTTCATTTATTCTTGAAGGATCATTTTTTGTGCTTTTGGGAGATGAAGATGAATCTGTATATATTTCACACTGCTCGGGTGAAAGTAGTCCGTTGATTTGCTTTTGCGACTGCCCCGATGCTCAGACTGTTATACAAATATAATATCGATATTGCATATGGTAGAAAGATTGCAGCTCAACTCCGAACTCCTTGATTGGTCTAGAAAAAAGGAAAAACAAAGCCTCCTAGCTTGCATCATTTGAATGTTTAGCACTCTGCTTATATTTCTGTTTTGCAATTATCTAGAATTTCATGAACAGTTGATCATCGTAACGAACGTCGTATCGCTGCTAATGTTTGGCCTCCTTGTTGTTGATCTGTGATAAATAAACAATGTTTAAGCATTCATGGTTTGCATCATCTTTTGTGCATTACCAGCTATAAGGGTCTTCAGTTCCTTAATGTCCTAAACTTTTGTCCCCAGATGTTCTCATGATCATTGGTGCTGTTTTGGCGGGATACGCGACATATATGCTTCAACAGGGTTTTGGAGCCTCGAGCATGTCTCAGACAGTAAGTTTTCATTTAATGGATTTTCTGATGAACTGGTTCTCTATATATTTTAGAATACAACAACAACTACGGTACAACTGTAACAGCTCAAGCCCACCGCTGATAGATATTGTCCGCTTTGGCTCATTACATATCGTCGTCAGCCTCACAGTTTTAAAATGCGTATACTAGGGAGTGGTTTCCACACCCTTATTAGGCATGTTTCGTTTCCCTCTCCAACAAATTGTGAGATCCCACATCGGTTAGAAAGGGGAACGAAACATTCCTTATAATGGTGTGGAAACCTCTTCCTAGTAGACACGTTTTGAAACCTTGAGGGAAAGCTCAAAGAGGACAATATTTGCTAGTGGTGGGTTTGAGCTGTTACAAATGGTATCAGAGTCAGGCACCGAGCCGTCTGGCAGTAAAGACGCTGGGCCTCCAAGGGGGTAGATTGTGAGATCCCGCATTGGTTGGAGAGGAGAACGAAACATTCCTTATAAGAACGTGGAAACCTCTCCCTAGTAGACGTGTTTTAAAACCTTGAGGCGAAACCCGAAAGAGAAAGTCCAAAGAGGACAATATCTACTAGCGGTGGGCTTGAACTGTTGCACTAACCGAGAATACCTTGATTACACCTTTGTATTTGTAACATTTTCCTTGCGTTATGAAATGCCATATTGTTGCAGTATTCTCCATTAGAGACTGAGTATAGAGAAAAACCAAACAAGGAAGAATCGACCTCGCCTGTGGATAGTGTAAGGGAGACACCAGGATGGCCATCATTTGGACGACTCATCATTGATCTCTCCAAACTGGCTCTTGAAGCTGTGGCTAGCATTTTCCTTTCTTTTGTTCCTGCCCGTTTCAGAGCTCGTAGCACCCCGAAAGGCCTGACCCCATTGAAAGATTCTCTCTGGATGCCTGAAGATGAACCCGATCGACCACCAGCTCAAATGCAGAGAGCTCCTGTTCCTCTGACTGAAACAAGACAAGCTCATATAGGCAATGCAAGTGATCAATTTCCTGAGGTGATGATGAAGCCTCCAAAGCTCAAATCAAGTAGTTTCAAAGATCCCTCACTGCAAAGTAAGCACCGATCGAAACGTCACGACCGTGCTGATTTTTACGAATCTGGTGAGATACCTCCACCTTATAGCAGGTCCAAGAGCCAAAAAGAAAGACCACGACACCGCCAGCGCGAGAAAAGTGCAGAGATCCATCACGGAGCTGCAGGACCTGAGCCAAAGCCCATGGAGATGAAGCCAGTCAATTACGACAATTCCAACTTAGAACATTACAACATCAGGAATAAGTATGAGCCAAATACTTCCTATGGATTCTAA AAGAAAAAAAGCGATTATGTTTACATTTTCGAACAGCCGTGGCTTAGCTTTCTTCTCACAAAGTGAGGCTAAGGAGGGGGCAGAGTAGAAATCGGAAAGGAAGAACAAAATCAAAATAAAGAAAGGATTAAGAGGGGAAACTTTTTGTTAACTCAAATCCAGATTGTTACCTCTTCTTCTGGAGCTGTCGTTTGTGATGCTTTGTTCGTTTCTGCAGCCGAAGAGCCGAATAGAGCTAACCCCACCTCGGTATTCTGCCAATCAAAACTCCATAGCTACTGATTCTCTCACTACCCATCTGCAGAAAATGGCAGAAATCGGTTTCTACTTGAATCGCTGAGCCCAAGCTCCCGATCTCCCTCTCTCAATTGGCTCAATTTGTCGGCTGTGATATGAAGAACTCCTTTACATTTGTCAGTTTCATACTAGTTTTACTCGTTTTCCCTTTTCAAATCCAAGTTCATGCTACTCCTGCAGGACCATTGATTAAACACTTGTCTTCTATTGTCAAATGGACTAGGTCTTCATATAAAGCCCCCCCATCAGATGGTAATGTCCTGCAATTTGAGAATGGGTACTTGGTTGAAACTGTAGTGGAGGGAAATGAAATTGGAGTTCTTCCACATAAGATCCATGTCTCGAAGGAGGGCGAGCTTTTCGTCGTTGATTCGGTTAATAGCAATATTGTGAAGATCACCCCTCCATTATCCAAATATACTAGAGCAAGATTGGTTGCTGGGTCGTTTCAAAGCCACACGGGGCATGTTGATGGAAAACCAAACGACGCTCGTTTTAATCATCCAAAGGGTGTAACCGTGGACGATAGAGGGAATGTGTATGTTGCTGATACCTTGAATTTGGCCATCAGAAAGATTGGAGATGCTGGTGTGACAACCATTGCAGGGGGCAAGTCAAATGTCGCAGGCTACAGAGATGGACCAGGTGAAGATGCGAAGTTCTCAAACGATTTTGATGTAATGTACATCCGATCTACTTGTTCCTTGTTAGTTATTGACCGTGGAAATGCTGCGATTCGGCAAATATTTCTAAATCTGGAGGATTGCGAATATCAAGATAGTTCAATTTCCAACAGTGATGTTCTCATGATCATTGGTGCTGTTTTGGCGGGATACGCGACATATATGCTTCAACAGGGTTTTGGAGCCTCGAGCATAGCTCGTAGCACCCCGAAAGGCCTGACCCCATTGAAAGATTCTCTCTGGATGCCTGAAGATGAACCCGATCGACCACCAGCTCAAATGCAGAGAGCTCCTGTTCCTCTGACTGAAACAAGACAAGCTCATATAGGCAATGCAAGTGATCAATTTCCTGAGGTGATGATGAAGCCTCCAAAGCTCAAATCAAGTAGTTTCAAAGATCCCTCACTGCAAAGTAAGCACCGATCGAAACGTCACGACCGTGCTGATTTTTACGAATCTGGTGAGATACCTCCACCTTATAGCAGGTCCAAGAGCCAAAAAGAAAGACCACGACACCGCCAGCGCGAGAAAAGTGCAGAGATCCATCACGGAGCTGCAGGACCTGAGCCAAAGCCCATGGAGATGAAGCCAGTCAATTACGACAATTCCAACTTAGAACATTACAACATCAGGAATAAGTATGAGCCAAATACTTCCTATGGATTCTAA ATGAAGAACTCCTTTACATTTGTCAGTTTCATACTAGTTTTACTCGTTTTCCCTTTTCAAATCCAAGTTCATGCTACTCCTGCAGGACCATTGATTAAACACTTGTCTTCTATTGTCAAATGGACTAGGTCTTCATATAAAGCCCCCCCATCAGATGGTAATGTCCTGCAATTTGAGAATGGGTACTTGGTTGAAACTGTAGTGGAGGGAAATGAAATTGGAGTTCTTCCACATAAGATCCATGTCTCGAAGGAGGGCGAGCTTTTCGTCGTTGATTCGGTTAATAGCAATATTGTGAAGATCACCCCTCCATTATCCAAATATACTAGAGCAAGATTGGTTGCTGGGTCGTTTCAAAGCCACACGGGGCATGTTGATGGAAAACCAAACGACGCTCGTTTTAATCATCCAAAGGGTGTAACCGTGGACGATAGAGGGAATGTGTATGTTGCTGATACCTTGAATTTGGCCATCAGAAAGATTGGAGATGCTGGTGTGACAACCATTGCAGGGGGCAAGTCAAATGTCGCAGGCTACAGAGATGGACCAGGTGAAGATGCGAAGTTCTCAAACGATTTTGATGTAATGTACATCCGATCTACTTGTTCCTTGTTAGTTATTGACCGTGGAAATGCTGCGATTCGGCAAATATTTCTAAATCTGGAGGATTGCGAATATCAAGATAGTTCAATTTCCAACAGTGATGTTCTCATGATCATTGGTGCTGTTTTGGCGGGATACGCGACATATATGCTTCAACAGGGTTTTGGAGCCTCGAGCATAGCTCGTAGCACCCCGAAAGGCCTGACCCCATTGAAAGATTCTCTCTGGATGCCTGAAGATGAACCCGATCGACCACCAGCTCAAATGCAGAGAGCTCCTGTTCCTCTGACTGAAACAAGACAAGCTCATATAGGCAATGCAAGTGATCAATTTCCTGAGGTGATGATGAAGCCTCCAAAGCTCAAATCAAGTAGTTTCAAAGATCCCTCACTGCAAAGTAAGCACCGATCGAAACGTCACGACCGTGCTGATTTTTACGAATCTGGTGAGATACCTCCACCTTATAGCAGGTCCAAGAGCCAAAAAGAAAGACCACGACACCGCCAGCGCGAGAAAAGTGCAGAGATCCATCACGGAGCTGCAGGACCTGAGCCAAAGCCCATGGAGATGAAGCCAGTCAATTACGACAATTCCAACTTAGAACATTACAACATCAGGAATAAGTATGAGCCAAATACTTCCTATGGATTCTAA MKNSFTFVSFILVLLVFPFQIQVHATPAGPLIKHLSSIVKWTRSSYKAPPSDGNVLQFENGYLVETVVEGNEIGVLPHKIHVSKEGELFVVDSVNSNIVKITPPLSKYTRARLVAGSFQSHTGHVDGKPNDARFNHPKGVTVDDRGNVYVADTLNLAIRKIGDAGVTTIAGGKSNVAGYRDGPGEDAKFSNDFDVMYIRSTCSLLVIDRGNAAIRQIFLNLEDCEYQDSSISNSDVLMIIGAVLAGYATYMLQQGFGASSIARSTPKGLTPLKDSLWMPEDEPDRPPAQMQRAPVPLTETRQAHIGNASDQFPEVMMKPPKLKSSSFKDPSLQSKHRSKRHDRADFYESGEIPPPYSRSKSQKERPRHRQREKSAEIHHGAAGPEPKPMEMKPVNYDNSNLEHYNIRNKYEPNTSYGF Homology
BLAST of Carg13088 vs. NCBI nr
Match: KAG7031139.1 (hypothetical protein SDJN02_05178 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 833.9 bits (2153), Expect = 5.9e-238 Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0
BLAST of Carg13088 vs. NCBI nr
Match: KAG6600498.1 (hypothetical protein SDJN03_05731, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 803.9 bits (2075), Expect = 6.5e-229 Identity = 417/482 (86.51%), Postives = 418/482 (86.72%), Query Frame = 0
BLAST of Carg13088 vs. NCBI nr
Match: XP_022942820.1 (uncharacterized protein LOC111447735 isoform X2 [Cucurbita moschata]) HSP 1 Score: 798.9 bits (2062), Expect = 2.1e-227 Identity = 415/482 (86.10%), Postives = 416/482 (86.31%), Query Frame = 0
BLAST of Carg13088 vs. NCBI nr
Match: XP_023547910.1 (uncharacterized protein LOC111806707 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 796.6 bits (2056), Expect = 1.0e-226 Identity = 414/482 (85.89%), Postives = 415/482 (86.10%), Query Frame = 0
BLAST of Carg13088 vs. NCBI nr
Match: XP_022942819.1 (uncharacterized protein LOC111447735 isoform X1 [Cucurbita moschata]) HSP 1 Score: 794.3 bits (2050), Expect = 5.2e-226 Identity = 415/483 (85.92%), Postives = 416/483 (86.13%), Query Frame = 0
BLAST of Carg13088 vs. ExPASy Swiss-Prot
Match: Q8VZ10 (Protein SUPPRESSOR OF QUENCHING 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SOQ1 PE=1 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 6.1e-04 Identity = 46/148 (31.08%), Postives = 70/148 (47.30%), Query Frame = 0
BLAST of Carg13088 vs. ExPASy TrEMBL
Match: A0A6J1FWZ8 (uncharacterized protein LOC111447735 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447735 PE=4 SV=1) HSP 1 Score: 798.9 bits (2062), Expect = 1.0e-227 Identity = 415/482 (86.10%), Postives = 416/482 (86.31%), Query Frame = 0
BLAST of Carg13088 vs. ExPASy TrEMBL
Match: A0A6J1FSF5 (uncharacterized protein LOC111447735 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447735 PE=4 SV=1) HSP 1 Score: 794.3 bits (2050), Expect = 2.5e-226 Identity = 415/483 (85.92%), Postives = 416/483 (86.13%), Query Frame = 0
BLAST of Carg13088 vs. ExPASy TrEMBL
Match: A0A6J1IU41 (uncharacterized protein LOC111479928 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479928 PE=4 SV=1) HSP 1 Score: 785.8 bits (2028), Expect = 8.9e-224 Identity = 408/482 (84.65%), Postives = 412/482 (85.48%), Query Frame = 0
BLAST of Carg13088 vs. ExPASy TrEMBL
Match: A0A6J1IRS7 (uncharacterized protein LOC111479928 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479928 PE=4 SV=1) HSP 1 Score: 781.2 bits (2016), Expect = 2.2e-222 Identity = 408/483 (84.47%), Postives = 412/483 (85.30%), Query Frame = 0
BLAST of Carg13088 vs. ExPASy TrEMBL
Match: A0A6J1CPD9 (uncharacterized protein LOC111012893 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012893 PE=4 SV=1) HSP 1 Score: 675.6 bits (1742), Expect = 1.3e-190 Identity = 368/488 (75.41%), Postives = 386/488 (79.10%), Query Frame = 0
BLAST of Carg13088 vs. TAIR 10
Match: AT3G14860.1 (NHL domain-containing protein ) HSP 1 Score: 451.4 bits (1160), Expect = 7.7e-127 Identity = 267/487 (54.83%), Postives = 320/487 (65.71%), Query Frame = 0
BLAST of Carg13088 vs. TAIR 10
Match: AT3G14860.2 (NHL domain-containing protein ) HSP 1 Score: 451.1 bits (1159), Expect = 1.0e-126 Identity = 267/488 (54.71%), Postives = 320/488 (65.57%), Query Frame = 0
BLAST of Carg13088 vs. TAIR 10
Match: AT1G70280.2 (NHL domain-containing protein ) HSP 1 Score: 241.5 bits (615), Expect = 1.2e-63 Identity = 136/307 (44.30%), Postives = 193/307 (62.87%), Query Frame = 0
BLAST of Carg13088 vs. TAIR 10
Match: AT1G23880.1 (NHL domain-containing protein ) HSP 1 Score: 235.0 bits (598), Expect = 1.1e-61 Identity = 139/313 (44.41%), Postives = 195/313 (62.30%), Query Frame = 0
BLAST of Carg13088 vs. TAIR 10
Match: AT1G70280.1 (NHL domain-containing protein ) HSP 1 Score: 233.0 bits (593), Expect = 4.3e-61 Identity = 129/278 (46.40%), Postives = 178/278 (64.03%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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