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Carg13081 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAACGCAAATTGAAAACAAGCTAGAAATTATTAATTTGAAGATGGAAATTTCCAATCGACCTGGAATTCTGTGAGCCTCTAATTCCCCACCGGAGCAAAGAATATCCGTGCCCCTGTTGTCTCGTGCCCACCACGCACAGATGGGCTCTGCGCTTCTCTCAGTTCCTGCGCCTCAGCGAGCTCCATTCTTCCACTCCTCCTATGCAACCACTCCGAGATTGTCTCATGGACCCAGAACTTCACTCAGATTTTCATCATCTAGGGGCGTCAGCTTCCTCTCTTCCTCCTCTTCCTCCTCTTCTTCTTCTTCTGTTGTAGATGAAGAAACAAATTCTTCTCCTCCCGACGACCTCTCTCTTCAGTCTGAATCAGACCCTGATGCTTCTTCGTTCAGGTATTGATGATTTGATCCTTCGTCTCTCTGTTTGCAAGATTCTGATGATAGAAGAGTGATTTTGATAACTTTAATTCCATGGTGGTTCTGTGTTCGTTTATTGGATTACATTTATCTAGCTATGATAACTGTGTTATGTGTAGAACATTCTCCTCTTGAATTTTGGATTGAATTACTCCAAATGATGCTGAATGATGGACGAGCTCTAGCATTTGGTAAATAAACGAGGGTGAAAATTCTAGTTGTTGAGTATTGCTCTAGTTGATTATCATCCATAAAACTTCCTTTGAATTTTCGGTTTTCCCCTTGACTATCCATATGGATGCTCATGCTCTGGTTGAGAAGTTAAATATGTCCTAAATTTGAAATAGTCACCTTAAGAGGGAAAACGTGCGCCAATTTTCCTTGTTTCTCCTAGGAACTAGTTAAACAAACAAGATGTGGGAAGAACAAAATAACCTCTAAGCTCCCTCTGCTCATACTCAATCCTATTGGTGTAATCAGCTGAGACAAGACTTGGTTCAGCACTTAAAATCAGTATCATCCCATCATGACTGAATGTCTCTCTATTTCGCTTGTTCTTGTACATATTATATAGGCCATGTATTTCAGTGTGTAAAGGACATGAATTGAATCAGTCCACAATGCAGGGTGAAAACTAGTTGAACGGTTCATTTCAAACCACACCTGGGGTCTCTTGAGACCATCAATTTAGATATATTCACGCCATTTTCACTTAGAATGTTATGGTCTGCATTTTTCCTGCCTTAACTTATAATAATGATGGTGCCAACGATATGGCTTAGAACAATCTTGTTTTCTCTTTCATTTCTTATAAACAGAGGATGCAAAGCCTGTGGAAAGGAAGAAATTGAGAGGGGATGCAATGGTGAGGGAAGGATACAAGGTGGCATTGCAACAGTCCCAGGTTTTGGTTGGTGGCCTATAAAGGCATACAGGCCTTGTCCTGAATTTGTAGCATCCGGTGGCAGATATAAGCGTCGTGGACAAAGCATGGACGAGGTTACATCTGGAGGAGCAAGGACAGAAGCCTCTGCTGCTGGTGGCAAAAAGGACTCGTTGAGGTACAAGCCATATATCCCTTTCCTTATGAAGTAAATTCATATGTTTATATACTTTCAGAACTTGTAATGCTGCAATCTAACATGCTGCTCTTGTATACTGACTTGTAAAATGACCAAACCGAATGCTTGATACCAATTTTGTGAACTTGCTCACACCATAGGGATAAGAATAGCTGGAAGTTTGGCGAAAATAGCTTCTTCCATTTTTCTTTGGCTGGGAGAAATGAAAGTATTATCTCATTATCCGAGTACTGTAGGAGAGGAAGGCCATCTCGAAATGGCATGGTTGCTTTCATAACTGGTTTCTGGGTTGTCAGTAAAATTCTCTTGTTAGCTTCATTTTGTTCTCATTGTTCTTATCAGCCTGATAGTAAGAGAAGGTAGCTGTTAGGATTAGGATTTCCATAATGTGACCAAGCTTCTTGTTATCATTGTGGTTTAGGATTCCCCCTGTTGTTTTTCTTGAATTTCCTTCATGTTTTACTTCGAGTTTCTAACTTTTTAACGATACCGATTCATTCACTTTTCATTACGTCGTTTCGTCCAGCAAGAAAAAGTCGGCAAAGGGGTAATATAGGCAGGCTTACCATCCACAAGTTGATACACAAACAGGGAGGGAATGAAGGATGGATGATGTAGAATTGGTTTCATGGAAATACTACATGTGAATGGGTGAAAACTGAACAACAAAATCTCATTGGGATTTTTCTGTATTGAAATTTGGCTAGATTCTCACTTCTTTTAGGCTTCTGTAACATCAGAATGCTGCATTTAAAGCACAGAAAATTTTCCAATCCATGGTTTGTTTGAAGCGTATCAAGATTCATTCTTTGCAGGATATTTTCTTTTCCAGTTCCTAACGGATGCCTTGTTCGTTCTCTCATGCCTAATTCTCCC CAACGCAAATTGAAAACAAGCTAGAAATTATTAATTTGAAGATGGAAATTTCCAATCGACCTGGAATTCTGTGAGCCTCTAATTCCCCACCGGAGCAAAGAATATCCGTGCCCCTGTTGTCTCGTGCCCACCACGCACAGATGGGCTCTGCGCTTCTCTCAGTTCCTGCGCCTCAGCGAGCTCCATTCTTCCACTCCTCCTATGCAACCACTCCGAGATTGTCTCATGGACCCAGAACTTCACTCAGATTTTCATCATCTAGGGGCGTCAGCTTCCTCTCTTCCTCCTCTTCCTCCTCTTCTTCTTCTTCTGTTGTAGATGAAGAAACAAATTCTTCTCCTCCCGACGACCTCTCTCTTCAGTCTGAATCAGACCCTGATGCTTCTTCGTTCAGAGGATGCAAAGCCTGTGGAAAGGAAGAAATTGAGAGGGGATGCAATGGTGAGGGAAGGATACAAGGTGGCATTGCAACAGTCCCAGGTTTTGGTTGGTGGCCTATAAAGGCATACAGGCCTTGTCCTGAATTTGTAGCATCCGGTGGCAGATATAAGCGTCGTGGACAAAGCATGGACGAGGTTACATCTGGAGGAGCAAGGACAGAAGCCTCTGCTGCTGGTGGCAAAAAGGACTCGTTGAGGTACAAGCCATATATCCCTTTCCTTATGAAGTAAATTCATATGTTTATATACTTTCAGAACTTGTAATGCTGCAATCTAACATGCTGCTCTTGTATACTGACTTGTAAAATGACCAAACCGAATGCTTGATACCAATTTTGTGAACTTGCTCACACCATAGGGATAAGAATAGCTGGAAGTTTGGCGAAAATAGCTTCTTCCATTTTTCTTTGGCTGGGAGAAATGAAAGTATTATCTCATTATCCGAGTACTGTAGGAGAGGAAGGCCATCTCGAAATGGCATGGTTGCTTTCATAACTGGTTTCTGGGTTGTCAGTAAAATTCTCTTGTTAGCTTCATTTTGTTCTCATTGTTCTTATCAGCCTGATAGTAAGAGAAGGTAGCTGTTAGGATTAGGATTTCCATAATGTGACCAAGCTTCTTGTTATCATTGTGGTTTAGGATTCCCCCTGTTGTTTTTCTTGAATTTCCTTCATGTTTTACTTCGAGTTTCTAACTTTTTAACGATACCGATTCATTCACTTTTCATTACGTCGTTTCGTCCAGCAAGAAAAAGTCGGCAAAGGGGTAATATAGGCAGGCTTACCATCCACAAGTTGATACACAAACAGGGAGGGAATGAAGGATGGATGATGTAGAATTGGTTTCATGGAAATACTACATGTGAATGGGTGAAAACTGAACAACAAAATCTCATTGGGATTTTTCTGTATTGAAATTTGGCTAGATTCTCACTTCTTTTAGGCTTCTGTAACATCAGAATGCTGCATTTAAAGCACAGAAAATTTTCCAATCCATGGTTTGTTTGAAGCGTATCAAGATTCATTCTTTGCAGGATATTTTCTTTTCCAGTTCCTAACGGATGCCTTGTTCGTTCTCTCATGCCTAATTCTCCC ATGGGCTCTGCGCTTCTCTCAGTTCCTGCGCCTCAGCGAGCTCCATTCTTCCACTCCTCCTATGCAACCACTCCGAGATTGTCTCATGGACCCAGAACTTCACTCAGATTTTCATCATCTAGGGGCGTCAGCTTCCTCTCTTCCTCCTCTTCCTCCTCTTCTTCTTCTTCTGTTGTAGATGAAGAAACAAATTCTTCTCCTCCCGACGACCTCTCTCTTCAGTCTGAATCAGACCCTGATGCTTCTTCGTTCAGAGGATGCAAAGCCTGTGGAAAGGAAGAAATTGAGAGGGGATGCAATGGTGAGGGAAGGATACAAGGTGGCATTGCAACAGTCCCAGGTTTTGGTTGGTGGCCTATAAAGGCATACAGGCCTTGTCCTGAATTTGTAGCATCCGGTGGCAGATATAAGCGTCGTGGACAAAGCATGGACGAGGTTACATCTGGAGGAGCAAGGACAGAAGCCTCTGCTGCTGGTGGCAAAAAGGACTCGTTGAGGTACAAGCCATATATCCCTTTCCTTATGAAGTAA MGSALLSVPAPQRAPFFHSSYATTPRLSHGPRTSLRFSSSRGVSFLSSSSSSSSSSSVVDEETNSSPPDDLSLQSESDPDASSFRGCKACGKEEIERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPEFVASGGRYKRRGQSMDEVTSGGARTEASAAGGKKDSLRYKPYIPFLMK Homology
BLAST of Carg13081 vs. NCBI nr
Match: KAG7031146.1 (hypothetical protein SDJN02_05185 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 342.0 bits (876), Expect = 3.0e-90 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
BLAST of Carg13081 vs. NCBI nr
Match: KAG6600508.1 (hypothetical protein SDJN03_05741, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 315.5 bits (807), Expect = 3.0e-82 Identity = 165/168 (98.21%), Postives = 165/168 (98.21%), Query Frame = 0
BLAST of Carg13081 vs. NCBI nr
Match: XP_022942141.1 (uncharacterized protein LOC111447296 [Cucurbita moschata]) HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81 Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0
BLAST of Carg13081 vs. NCBI nr
Match: XP_023527851.1 (uncharacterized protein LOC111790947 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 301.6 bits (771), Expect = 4.4e-78 Identity = 158/166 (95.18%), Postives = 161/166 (96.99%), Query Frame = 0
BLAST of Carg13081 vs. NCBI nr
Match: XP_023527861.1 (uncharacterized protein LOC111790947 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 300.4 bits (768), Expect = 9.9e-78 Identity = 157/164 (95.73%), Postives = 160/164 (97.56%), Query Frame = 0
BLAST of Carg13081 vs. ExPASy TrEMBL
Match: A0A6J1FN06 (uncharacterized protein LOC111447296 OS=Cucurbita moschata OX=3662 GN=LOC111447296 PE=4 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 9.3e-82 Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0
BLAST of Carg13081 vs. ExPASy TrEMBL
Match: A0A6J1J5I4 (uncharacterized protein LOC111481538 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481538 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 6.5e-75 Identity = 151/166 (90.96%), Postives = 157/166 (94.58%), Query Frame = 0
BLAST of Carg13081 vs. ExPASy TrEMBL
Match: A0A6J1J0C4 (uncharacterized protein LOC111481538 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481538 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 1.9e-74 Identity = 150/164 (91.46%), Postives = 156/164 (95.12%), Query Frame = 0
BLAST of Carg13081 vs. ExPASy TrEMBL
Match: A0A6J1C7J9 (uncharacterized protein LOC111008142 OS=Momordica charantia OX=3673 GN=LOC111008142 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 6.1e-65 Identity = 136/168 (80.95%), Postives = 147/168 (87.50%), Query Frame = 0
BLAST of Carg13081 vs. ExPASy TrEMBL
Match: A0A0A0KUY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052700 PE=4 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 3.1e-61 Identity = 137/174 (78.74%), Postives = 146/174 (83.91%), Query Frame = 0
BLAST of Carg13081 vs. TAIR 10
Match: AT5G42070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 123.6 bits (309), Expect = 1.5e-28 Identity = 79/165 (47.88%), Postives = 100/165 (60.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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