
Carg13080 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGGTCACTAACCAAAACCTCCTCCTCCTCCACCTCTCCGATTCAACTGAAATTCCGATTCCGTCACCGGAGGTCATTTCCACGACGTCATCTCCGGCGCCGGCCAACGCATTTCATGTTCCGAACTCCATAGTTGATTGTTTATTCTACGGTTTGGTTTCTTCTCTTGTCGACGGCGTGTTTACTGACCTCCCGCTGAAAACTGGACGCCATAGATTTTTCTAGGGTTTCATGTTCTGTGAGGTTCAAAGTCATACTCATACAGAGGCTTTCATGTCGTCCGAATGGAGATTGCCTCTGCTGCCACCGTTGCCTTGTGGTCCCAACCCTTTCCGATAGCTGCGATTGTTACTTTTCTTTGCTTTCTTCTCGCTCTTTTCGCCGCCGTTCGATTGGTTTCTGTTCCTTTTATTAGGAGGACGAAAGCGCTTCAATCGGAGGGCGTGGGTACGAGGAATTGTAATTGTACCTGTTCGCTTAACGGTGGTGTGGTTATTGGGGGTTTGGACCCCAGGGCTGAGGTTACTTCTTCGACCCGTACGACTATGCCTTATTTGAACGGTCGTGTAGTGGAAGTGTTGGAGAAGGTGCCGGTGGTTGTGACGGAGCGGCAGACAGGCGCCTCGATGATGGAGCAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGCCTGTGCCGTTTGTCCATGACGAATTCGTTGATGCGCAAGGCCGCGAATGATGATAATGCCTGGAAAGCGCTTTATCATAAGGTATAGGTTAGGTTTAATCTTCTTTTGTATGGTTTTCGTCTGAACTGCTGGAGTTGCGGTATTTTTTTTTTCTTCTGGAAGATGAATACCGAGGTAGAAACACGACGGGATTTCAGAATTGTGTGTACTTGGCAATTTGTTAAGAACTCTTGTTACCATCGTCTCGTCTACATTCATTCAATTACTTCAGCGTCTTCTAGTAATTCTGGGGGGAAACGAATTGGCTGTATTTTTTATCATCGTTCCAGTTTATGGCTTGTGATCACAGTTCTTGGATTGACAGGAGCTACCTCTGTTCTTCGTTTGTGTACTGTTCTGGATGGTTGAATCTATTTCTCTGGGGCTAAAAGAACTTTTTCCATTAAATCTTCTAGGACTTCTCACTGGAACAGGATACTGTGACTCCAATTAACGGGTGGAAGGCGTACTATGCTGCAACAAGAACAATTATGAACATCAATGCCCAATTCTGTAACATCATCAGAGAGAGGTCCCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATCCCTCAGGAGAATTCTTTTCCGGGTACTTTCCTCATTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGAATATTGCTATATTTTTTGCCATGAAATCTGACTGCTGCTTGATATGGCTGACTAAATTATCCAACACGTCTGACATTTGTTTATTTCAAGACTTGGGAGCTCGCATATATGACCCCTTTTTGTTGTCTCACTCGTCAGATCTTTACATATTTTAAGCATTTTTTTATTAAGAAGAAGGTGATATACAAGGGATTATCAGAAATGACATGAGGCTTATGATTACTGTCATATGGGTGCTAATGGCTATCTGATTACCGTCATAAGCCAAATTTTGAAAAGTCAAAAAATAGTTTTTAAAAACTTGTTTTTGCTTTTATCATTTTGGCTAAGAATTCAAACATTTTCTTTTAAAGAAATGTGAAAACCATAGTAAAGAAATTGCAAGGGAACAAACACAATTTTCAAAAACAGAAATCTAAAATTAAAATTGTTATTGAACGGCCAAGTTTCTAGTAGTTTTGTTCTATAGAGCATTTGAGGACAATAATTTATTATCAATGTTGAGGCCGGCAATAGACCTTAACCTCGTGTCTCTATTGTCACTTGATAAAGCAATTTTATGAGACTTCGGATAAAGGGTTTTCTTCTTATTTTTGCACAATTTTCTCATTTATTTTGGAAGATCCATCTTTATACGCTGAAACATGGGCCAATATGTTCGTATGTTGCCTCAACTATTTGTGGTAGACCGATGCTGCATTATGGGCTTTGTTCTTTTTGAATCTGGCTGTATCTAAATGTTTCTTGTGGGAAAGATTTTGCCATGTGCATGGTTAACTACATTACATGATTAATGCTCTGCGTTTATTTACTTGGCCTTCTAGAACAAAAGCAAATGTGTTACGTTAGTGTGAAGCTATGAGGAATAAGGATGTAGAATATATCCATTAATTTGTATTAATCTTCTAACTTCAACTAAGACTAGATGATATATTATTATACATTGACTTGCATAAACTTCGGCATGTCAATTGGTAGACCTGTTGACATGGGTTAACTCCACATCAATTTCATAACGCAGCTTCAGCACAAGGAACTGATAAGGTGGAACTTTCCTGATAATTTCGCAAGTAACCTTTGCGATCAACAAAGACACTTACTAATTTTAGGGGTGAACTATGTTGAAGGGATTGAATATTGAACCTGTCAAGTTGCTATATCTAGATGGTATGATATAAACAATTTATTGTGAAAGGCTATTTATGTATGTTATTTTATGCAATAACTCTATGAATTCCTATTATCTGTTAGAGTTAAAGCTTTCAAATAAATTCATATAATCTAGTACTTAACATGTTGGGGTTTTCCTTGTAACAGGTATAACGCAGTAATTCAAAGTTGGCAGGTTGCATTTAATTGGGAACAAGGGATTAATTTTCAGGTCCGCGACGTACGGGCTCGTGTCCTAACAGACATGGCTTGGGTTAGCATGAAAACCTACGTCGACATGGATACAGGGCCATTCAATGTGACTAACGTCTATGAGTACCATAACGGTCGATGGTACATGGTGCATCATCACAGCTCAGTGATGCTTATTGTTGGGGAGGTGGAAGAACAAATGGCTCATGGGTAACAGAGCAAAGATAGAAGAGAAGAAAACCATGAAAATATAGAATCAGTAGGACAAAGATAGGTGATGTCTGGCAGCAGAAGCAAGATTACTTCTTAACAGCACCAGAATCAACTGTTCGAACCTCAGTTTTGCTTGAGCTATGTTGATTGCTGCGCCCTTTTTCTTTCAATGTTTT CTGGTCACTAACCAAAACCTCCTCCTCCTCCACCTCTCCGATTCAACTGAAATTCCGATTCCGTCACCGGAGGTCATTTCCACGACGTCATCTCCGGCGCCGGCCAACGCATTTCATGTTCCGAACTCCATAGTTGATTGTTTATTCTACGGTTTGGTTTCTTCTCTTGTCGACGGCGTGTTTACTGACCTCCCGCTGAAAACTGGACGCCATAGATTTTTCTAGGGTTTCATGTTCTGTGAGGTTCAAAGTCATACTCATACAGAGGCTTTCATGTCGTCCGAATGGAGATTGCCTCTGCTGCCACCGTTGCCTTGTGGTCCCAACCCTTTCCGATAGCTGCGATTGTTACTTTTCTTTGCTTTCTTCTCGCTCTTTTCGCCGCCGTTCGATTGGTTTCTGTTCCTTTTATTAGGAGGACGAAAGCGCTTCAATCGGAGGGCGTGGGTACGAGGAATTGTAATTGTACCTGTTCGCTTAACGGTGGTGTGGTTATTGGGGGTTTGGACCCCAGGGCTGAGGTTACTTCTTCGACCCGTACGACTATGCCTTATTTGAACGGTCGTGTAGTGGAAGTGTTGGAGAAGGTGCCGGTGGTTGTGACGGAGCGGCAGACAGGCGCCTCGATGATGGAGCAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGCCTGTGCCGTTTGTCCATGACGAATTCGTTGATGCGCAAGGCCGCGAATGATGATAATGCCTGGAAAGCGCTTTATCATAAGGACTTCTCACTGGAACAGGATACTGTGACTCCAATTAACGGGTGGAAGGCGTACTATGCTGCAACAAGAACAATTATGAACATCAATGCCCAATTCTGTAACATCATCAGAGAGAGGTCCCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATCCCTCAGGAGAATTCTTTTCCGGGTATAACGCAGTAATTCAAAGTTGGCAGGTTGCATTTAATTGGGAACAAGGGATTAATTTTCAGGTCCGCGACGTACGGGCTCGTGTCCTAACAGACATGGCTTGGGTTAGCATGAAAACCTACGTCGACATGGATACAGGGCCATTCAATGTGACTAACGTCTATGAGTACCATAACGGTCGATGGTACATGGTGCATCATCACAGCTCAGTGATGCTTATTGTTGGGGAGGTGGAAGAACAAATGGCTCATGGGTAACAGAGCAAAGATAGAAGAGAAGAAAACCATGAAAATATAGAATCAGTAGGACAAAGATAGGTGATGTCTGGCAGCAGAAGCAAGATTACTTCTTAACAGCACCAGAATCAACTGTTCGAACCTCAGTTTTGCTTGAGCTATGTTGATTGCTGCGCCCTTTTTCTTTCAATGTTTT ATGGAGATTGCCTCTGCTGCCACCGTTGCCTTGTGGTCCCAACCCTTTCCGATAGCTGCGATTGTTACTTTTCTTTGCTTTCTTCTCGCTCTTTTCGCCGCCGTTCGATTGGTTTCTGTTCCTTTTATTAGGAGGACGAAAGCGCTTCAATCGGAGGGCGTGGGTACGAGGAATTGTAATTGTACCTGTTCGCTTAACGGTGGTGTGGTTATTGGGGGTTTGGACCCCAGGGCTGAGGTTACTTCTTCGACCCGTACGACTATGCCTTATTTGAACGGTCGTGTAGTGGAAGTGTTGGAGAAGGTGCCGGTGGTTGTGACGGAGCGGCAGACAGGCGCCTCGATGATGGAGCAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGCCTGTGCCGTTTGTCCATGACGAATTCGTTGATGCGCAAGGCCGCGAATGATGATAATGCCTGGAAAGCGCTTTATCATAAGGACTTCTCACTGGAACAGGATACTGTGACTCCAATTAACGGGTGGAAGGCGTACTATGCTGCAACAAGAACAATTATGAACATCAATGCCCAATTCTGTAACATCATCAGAGAGAGGTCCCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATCCCTCAGGAGAATTCTTTTCCGGGTATAACGCAGTAATTCAAAGTTGGCAGGTTGCATTTAATTGGGAACAAGGGATTAATTTTCAGGTCCGCGACGTACGGGCTCGTGTCCTAACAGACATGGCTTGGGTTAGCATGAAAACCTACGTCGACATGGATACAGGGCCATTCAATGTGACTAACGTCTATGAGTACCATAACGGTCGATGGTACATGGTGCATCATCACAGCTCAGTGATGCTTATTGTTGGGGAGGTGGAAGAACAAATGGCTCATGGGTAA MEIASAATVALWSQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGVGTRNCNCTCSLNGGVVIGGLDPRAEVTSSTRTTMPYLNGRVVEVLEKVPVVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAYYAATRTIMNINAQFCNIIRERSLQAMSHFWLNADYVKCIHPSGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVMLIVGEVEEQMAHG Homology
BLAST of Carg13080 vs. NCBI nr
Match: KAG7031147.1 (F-box protein SKIP8 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 635.6 bits (1638), Expect = 2.3e-178 Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
BLAST of Carg13080 vs. NCBI nr
Match: KAG6600509.1 (F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 634.0 bits (1634), Expect = 6.7e-178 Identity = 312/313 (99.68%), Postives = 312/313 (99.68%), Query Frame = 0
BLAST of Carg13080 vs. NCBI nr
Match: XP_022942140.1 (F-box protein SKIP8-like [Cucurbita moschata]) HSP 1 Score: 628.2 bits (1619), Expect = 3.7e-176 Identity = 309/313 (98.72%), Postives = 310/313 (99.04%), Query Frame = 0
BLAST of Carg13080 vs. NCBI nr
Match: XP_022981983.1 (F-box protein SKIP8-like [Cucurbita maxima]) HSP 1 Score: 618.2 bits (1593), Expect = 3.8e-173 Identity = 302/313 (96.49%), Postives = 309/313 (98.72%), Query Frame = 0
BLAST of Carg13080 vs. NCBI nr
Match: XP_038880969.1 (F-box protein SKIP8-like [Benincasa hispida]) HSP 1 Score: 592.4 bits (1526), Expect = 2.2e-165 Identity = 289/313 (92.33%), Postives = 302/313 (96.49%), Query Frame = 0
BLAST of Carg13080 vs. ExPASy Swiss-Prot
Match: Q93YV9 (F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1) HSP 1 Score: 333.6 bits (854), Expect = 2.5e-90 Identity = 158/237 (66.67%), Postives = 183/237 (77.22%), Query Frame = 0
BLAST of Carg13080 vs. ExPASy Swiss-Prot
Match: Q9T0B0 (Probable F-box protein At4g23960 OS=Arabidopsis thaliana OX=3702 GN=At4g23960 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 4.3e-34 Identity = 65/115 (56.52%), Postives = 88/115 (76.52%), Query Frame = 0
BLAST of Carg13080 vs. ExPASy TrEMBL
Match: A0A6J1FVP4 (F-box protein SKIP8-like OS=Cucurbita moschata OX=3662 GN=LOC111447294 PE=4 SV=1) HSP 1 Score: 628.2 bits (1619), Expect = 1.8e-176 Identity = 309/313 (98.72%), Postives = 310/313 (99.04%), Query Frame = 0
BLAST of Carg13080 vs. ExPASy TrEMBL
Match: A0A6J1J3L2 (F-box protein SKIP8-like OS=Cucurbita maxima OX=3661 GN=LOC111480964 PE=4 SV=1) HSP 1 Score: 618.2 bits (1593), Expect = 1.8e-173 Identity = 302/313 (96.49%), Postives = 309/313 (98.72%), Query Frame = 0
BLAST of Carg13080 vs. ExPASy TrEMBL
Match: A0A6J1EUJ3 (F-box protein SKIP8-like OS=Cucurbita moschata OX=3662 GN=LOC111437693 PE=4 SV=1) HSP 1 Score: 591.7 bits (1524), Expect = 1.8e-165 Identity = 289/313 (92.33%), Postives = 302/313 (96.49%), Query Frame = 0
BLAST of Carg13080 vs. ExPASy TrEMBL
Match: A0A0A0KX34 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G052690 PE=4 SV=1) HSP 1 Score: 589.3 bits (1518), Expect = 9.2e-165 Identity = 286/313 (91.37%), Postives = 300/313 (95.85%), Query Frame = 0
BLAST of Carg13080 vs. ExPASy TrEMBL
Match: A0A5A7TU63 (F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003610 PE=4 SV=1) HSP 1 Score: 588.2 bits (1515), Expect = 2.0e-164 Identity = 286/313 (91.37%), Postives = 301/313 (96.17%), Query Frame = 0
BLAST of Carg13080 vs. TAIR 10
Match: AT4G10925.1 (Nuclear transport factor 2 (NTF2) family protein ) HSP 1 Score: 333.6 bits (854), Expect = 1.7e-91 Identity = 158/237 (66.67%), Postives = 183/237 (77.22%), Query Frame = 0
BLAST of Carg13080 vs. TAIR 10
Match: AT4G10925.2 (Nuclear transport factor 2 (NTF2) family protein ) HSP 1 Score: 333.6 bits (854), Expect = 1.7e-91 Identity = 158/237 (66.67%), Postives = 183/237 (77.22%), Query Frame = 0
BLAST of Carg13080 vs. TAIR 10
Match: AT4G10925.3 (Nuclear transport factor 2 (NTF2) family protein ) HSP 1 Score: 333.6 bits (854), Expect = 1.7e-91 Identity = 158/237 (66.67%), Postives = 183/237 (77.22%), Query Frame = 0
BLAST of Carg13080 vs. TAIR 10
Match: AT4G23960.1 (F-box family protein ) HSP 1 Score: 146.7 bits (369), Expect = 3.0e-35 Identity = 65/115 (56.52%), Postives = 88/115 (76.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|