Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA
mRNA sequence
ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA
Coding sequence (CDS)
ATGATTAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGATGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA
Protein sequence
MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN
Homology
BLAST of Carg13071 vs. NCBI nr
Match:
KAG6600516.1 (hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031155.1 hypothetical protein SDJN02_05195, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 244.2 bits (622), Expect = 6.4e-61
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSSQQQPEIKKVKK 60
MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSSQQQPEIKKVKK
Sbjct: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSSQQQPEIKKVKK 60
Query: 61 RVRFAETEPVIIAIDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELM 120
RVRFAETEPVIIAIDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELM
Sbjct: 61 RVRFAETEPVIIAIDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELM 120
Query: 121 RIPAARVRSSMVAN 135
RIPAARVRSSMVAN
Sbjct: 121 RIPAARVRSSMVAN 134
BLAST of Carg13071 vs. NCBI nr
Match:
XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])
HSP 1 Score: 189.9 bits (481), Expect = 1.4e-44
Identity = 115/143 (80.42%), Postives = 120/143 (83.92%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP---SSQQQPEIKK 60
MISN I SLNKKLQAVEISNRCRRTKK TTYVYRDDL+KKKQSP SSQ QPEIKK
Sbjct: 1 MISNFILSLNKKLQAVEISNRCRRTKK----TTYVYRDDLSKKKQSPPPSSSQPQPEIKK 60
Query: 61 VKKRVRFAETEPVIIAI------DAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLE 120
VKKRVRFA+TEPVIIAI EEETEKK VVRITVK+TK+EANRMLSRCS+GGVLE
Sbjct: 61 VKKRVRFADTEPVIIAITDKEERSTEEETEKK-VVRITVKLTKEEANRMLSRCSDGGVLE 120
Query: 121 LGDAACELMRIPAARVRSSMVAN 135
GD ACELMRIPA RV SSMVAN
Sbjct: 121 FGDVACELMRIPATRVSSSMVAN 138
BLAST of Carg13071 vs. NCBI nr
Match:
XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])
HSP 1 Score: 174.1 bits (440), Expect = 8.1e-40
Identity = 110/139 (79.14%), Postives = 117/139 (84.17%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKK--QSPS-SQQQPEIKK 60
MI NLISSLNKKLQAVEISNRCRRTKKTT VYR D++KKK QSPS SQ +PEI+K
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRRTKKTTN----VYRRDMSKKKQPQSPSPSQGKPEIEK 60
Query: 61 VKKRVRFAETEPVIIAID-----AEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLEL 120
VKKRVRFA+TEPVIIAID EEETEKK VVRITVK+TKQEANRMLSRCS+GGVLE
Sbjct: 61 VKKRVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEF 120
Query: 121 GDAACELMRIPAARVRSSM 132
GD A ELMRIPAARV SSM
Sbjct: 121 GDVASELMRIPAARVSSSM 134
BLAST of Carg13071 vs. NCBI nr
Match:
XP_008451951.1 (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 uncharacterized protein E6C27_scaffold74G001940 [Cucumis melo var. makuwa] >TYK16569.1 uncharacterized protein E5676_scaffold21G003900 [Cucumis melo var. makuwa])
HSP 1 Score: 173.7 bits (439), Expect = 1.1e-39
Identity = 110/145 (75.86%), Postives = 116/145 (80.00%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-----SSQQQP-E 60
MISNLISSLNKKLQAVEISNRC+RTKK TTYVYRDDL KKK SP S Q QP E
Sbjct: 1 MISNLISSLNKKLQAVEISNRCKRTKK----TTYVYRDDLTKKKHSPPLSSSSPQHQPAE 60
Query: 61 IKKVKKRVRFAETEPVIIAI-----DAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGV 120
IKKVKKRVRFA+TEPVIIAI + EEETEKK VVRITVK+TKQEANRMLSRCS GV
Sbjct: 61 IKKVKKRVRFADTEPVIIAISTDREEEEEETEKK-VVRITVKLTKQEANRMLSRCSNDGV 120
Query: 121 LELGDAACELMRIPAARVRSSMVAN 135
LE GD A EL+RIP RV SS+VAN
Sbjct: 121 LEFGDVASELLRIPPTRVSSSLVAN 140
BLAST of Carg13071 vs. NCBI nr
Match:
KAG7015140.1 (hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 172.9 bits (437), Expect = 1.8e-39
Identity = 108/140 (77.14%), Postives = 115/140 (82.14%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-SSQQQPEIKKVK 60
MI NLISSLNKKLQAVEISNRCRRTKKTT VYR D++KKKQ SQ +PEI+KVK
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRRTKKTTN----VYRGDMSKKKQPQLPSQGKPEIEKVK 60
Query: 61 KRVRFAETEPVIIAID-----AEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGD 120
KRVRFA+TEPVIIAID EEETEKK VVRITVK+TKQEANRMLSRCS+GGVLE D
Sbjct: 61 KRVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEFRD 120
Query: 121 AACELMRIPAARVRSSMVAN 135
A ELMRIPAARV SSMV N
Sbjct: 121 VASELMRIPAARVSSSMVVN 135
BLAST of Carg13071 vs. ExPASy TrEMBL
Match:
A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)
HSP 1 Score: 174.1 bits (440), Expect = 3.9e-40
Identity = 110/139 (79.14%), Postives = 117/139 (84.17%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKK--QSPS-SQQQPEIKK 60
MI NLISSLNKKLQAVEISNRCRRTKKTT VYR D++KKK QSPS SQ +PEI+K
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRRTKKTTN----VYRRDMSKKKQPQSPSPSQGKPEIEK 60
Query: 61 VKKRVRFAETEPVIIAID-----AEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLEL 120
VKKRVRFA+TEPVIIAID EEETEKK VVRITVK+TKQEANRMLSRCS+GGVLE
Sbjct: 61 VKKRVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEF 120
Query: 121 GDAACELMRIPAARVRSSM 132
GD A ELMRIPAARV SSM
Sbjct: 121 GDVASELMRIPAARVSSSM 134
BLAST of Carg13071 vs. ExPASy TrEMBL
Match:
A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)
HSP 1 Score: 173.7 bits (439), Expect = 5.1e-40
Identity = 110/145 (75.86%), Postives = 116/145 (80.00%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-----SSQQQP-E 60
MISNLISSLNKKLQAVEISNRC+RTKK TTYVYRDDL KKK SP S Q QP E
Sbjct: 1 MISNLISSLNKKLQAVEISNRCKRTKK----TTYVYRDDLTKKKHSPPLSSSSPQHQPAE 60
Query: 61 IKKVKKRVRFAETEPVIIAI-----DAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGV 120
IKKVKKRVRFA+TEPVIIAI + EEETEKK VVRITVK+TKQEANRMLSRCS GV
Sbjct: 61 IKKVKKRVRFADTEPVIIAISTDREEEEEETEKK-VVRITVKLTKQEANRMLSRCSNDGV 120
Query: 121 LELGDAACELMRIPAARVRSSMVAN 135
LE GD A EL+RIP RV SS+VAN
Sbjct: 121 LEFGDVASELLRIPPTRVSSSLVAN 140
BLAST of Carg13071 vs. ExPASy TrEMBL
Match:
A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)
HSP 1 Score: 173.7 bits (439), Expect = 5.1e-40
Identity = 110/145 (75.86%), Postives = 116/145 (80.00%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-----SSQQQP-E 60
MISNLISSLNKKLQAVEISNRC+RTKK TTYVYRDDL KKK SP S Q QP E
Sbjct: 1 MISNLISSLNKKLQAVEISNRCKRTKK----TTYVYRDDLTKKKHSPPLSSSSPQHQPAE 60
Query: 61 IKKVKKRVRFAETEPVIIAI-----DAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGV 120
IKKVKKRVRFA+TEPVIIAI + EEETEKK VVRITVK+TKQEANRMLSRCS GV
Sbjct: 61 IKKVKKRVRFADTEPVIIAISTDREEEEEETEKK-VVRITVKLTKQEANRMLSRCSNDGV 120
Query: 121 LELGDAACELMRIPAARVRSSMVAN 135
LE GD A EL+RIP RV SS+VAN
Sbjct: 121 LEFGDVASELLRIPPTRVSSSLVAN 140
BLAST of Carg13071 vs. ExPASy TrEMBL
Match:
A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)
HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 107/137 (78.10%), Postives = 114/137 (83.21%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-SSQQQPEIKKVK 60
MI NLISSLNKKLQAVEISNRCRRTKKTT VYR D++KKKQ SQ +PEI+KVK
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRRTKKTTN----VYRGDMSKKKQPQLPSQGKPEIEKVK 60
Query: 61 KRVRFAETEPVIIAID-----AEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGD 120
KRVRFA+TEPVIIAID EEETEKK VVRITVK+TKQEANRMLSRCS+GGVLE GD
Sbjct: 61 KRVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEFGD 120
Query: 121 AACELMRIPAARVRSSM 132
A ELMRIPAARV SSM
Sbjct: 121 VASELMRIPAARVSSSM 132
BLAST of Carg13071 vs. ExPASy TrEMBL
Match:
A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 7.4e-39
Identity = 105/146 (71.92%), Postives = 114/146 (78.08%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-----SSQQQP-E 60
MISNLISSLNKKLQAVEIS+RC+RTKK T YVYRD+L KK SP S Q QP E
Sbjct: 1 MISNLISSLNKKLQAVEISSRCKRTKK----TAYVYRDNLTKKNHSPPSSSSSPQHQPEE 60
Query: 61 IKKVKKRVRFAETEPVIIAIDAEEETE------KKRVVRITVKVTKQEANRMLSRCSEGG 120
IKKVKKRVRFA+TEPVIIAI + E E +K+VVRITVK+TKQEANRMLSRCS GG
Sbjct: 61 IKKVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGG 120
Query: 121 VLELGDAACELMRIPAARVRSSMVAN 135
VLE GD A ELMRIP RVRSS+VAN
Sbjct: 121 VLEFGDVASELMRIPPTRVRSSLVAN 142
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6600516.1 | 6.4e-61 | 100.00 | hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_038906331.1 | 1.4e-44 | 80.42 | uncharacterized protein LOC120092170 [Benincasa hispida] | [more] |
XP_022985430.1 | 8.1e-40 | 79.14 | uncharacterized protein LOC111483436 [Cucurbita maxima] | [more] |
XP_008451951.1 | 1.1e-39 | 75.86 | PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 unc... | [more] |
KAG7015140.1 | 1.8e-39 | 77.14 | hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1JBA8 | 3.9e-40 | 79.14 | uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436... | [more] |
A0A5D3D246 | 5.1e-40 | 75.86 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3BS40 | 5.1e-40 | 75.86 | uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=... | [more] |
A0A6J1EU86 | 1.1e-39 | 78.10 | uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376... | [more] |
A0A0A0KYE1 | 7.4e-39 | 71.92 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |