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Carg13060 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACAAAACCGAAATCAAAGGGGTTTTGTTGGAGCAGACGAGGGCGCGAAATAGAGAATTGAGATGGAGAAAGCTATGGCGACCTTCGACAAAGGCACGGTTTGTTCGGCTTGGAACTACTCCGCCAGCAGATTAGTCACTGGTTCGGCGGACGGAACCGTAGTCATCTTCGATTCTCTCGACCCTTCTTCCTCATCCACATCCTTAACTCGCACTTCAAACTTCAAGGTTTTTTAGTTTCACTGCTTTCTTTTATTTCAGTTGGACTTCATTATCCTAGGTCTAATCCATGGTTTCTTAGAGCTAATCTTACTTCTAAATGATTGTTAGTTTACGTTTACAAAATGGACAAACGTCTTAAGATTTTGGAGATGTATCGGTCATGTTATTTTATTTTCGTGCTTCGATTAGACTTCATGGAGAAATTCTATAAACTTTGAATTCACTTGTCAAGAGAGAGAGAAAAGTAAAGAATGGAGGGGTCAAGTGCAATGCGAGTGAGTTTTTGGGGCGAAGGAGTGAAATTGGGTTATTGACGGCAAGAGGAGAAAATTGATGATATGCGACTCATTTTCATCATTGCATGCTATGCTGAAATTGAGTCACATTACAATTTTAACAAGACAATAACTAATTCAAAGCTAGTAGAGGCAAAAGCGAGGGAAATATTCAAAGCCAACCAGGAAGTTTGTTCTCATCCTTCATTGGATGGCTTATGTTTCATGTTTTTTCTCGATGAAGACAAGGGCTTTAAGCTCTTAAAAAATTTGAAGCTGGAACGGGCTATGTGAACTTAGAAGATCATATCTGGCATAGAAATTAAATAGACAGAAATTATTGAATTACCGAAAGATTCATTAACATTAAGCGTCTGCTAACACTTTCAAGGCTAGTAGGTGCATTTTGAGTTCTTATTGGGGTCTCTCTCTTTGAGACCTTGGCTTGTTAAACGTTGTTCCAGAAAAGCTTTTAATGAGTGAAGTTTGCTCGAGCCTAAACCAGGTGAAACCATCTTTGTAGGCTCATGAGACTGCAATATTTAAGATTGTTTGGGTCCCTCCAGAGTATGGTGATTCTATTGCATGCATTTGTTCAGATGGAAGTTCGTCATTGTGGGAGGAGGTTGTTGAAGGTAATCTTTTGGTTTTTGTTGACCCCGGGTTCTCTCTCAAATTTTATTGTTACGTTAGCTACGTCTATTTCTTACATCTTATCTTCCCCTTTACTTGGCCCAAGAGCATGGTACATAAACTATAAACCCTCATTTGACTAGAATTTGAAGCGTCCTAATCATTGTATAAATCTATTGCCTGTTGCTGCTTTCTAGATGCCCAGCCTCTGCAGTGGAAGCTATCCAAACACTTCAAAAGTAATTCATCTCAAATCATAGACATCCAATTTGGAAATTCCTCTTCTGGTCTGAAAATGGTAAATGACAATATTTCTTCTGATTCTCTTGCGAGATATATATCCTTGTGCTGTTACTGGTGGATGATTCCTGTGTTTTTTGCTACTTCTGAATTGCCTTTGATTTTTAAAGCATTCAATTAGTTCATTTTTATTACTCTGGAACTTAACATATCATTATTTCCCCCTCAATAATGAAGTACTATAAGGATAACTTTGGATGTCTAAAATACTTTCTCATTGTTTCATTTTTGTTGCATTTTGTTATTCATGAAAAAGTATTTCCTATTAAAAAAAAAAAAAAACCCATTCACTCTTTTTTATGCCTTTTGTTTTTTTGTAGATTGCAGCATTTTCTGATGGCAATGTAAAAGTTTATGAGCTTATGGATCCTTTGGATTTGAAGAGTTGGCAACTTCAGGTGATCCATCTTTTAATCTTTTTTCATGTTCTCTAATTTTATTAGACTTCAGAAGTTATCATTTGAATGGCTTATTCCATTATGATCTTGCAATCTGAGGAAAGATGTACTGTAATTCGTTTGAACATTGATCGGACTTCAATCAATAGGATTTCCTCTTTTATAATAAAGGAAACTGACCTTTAGATTTCCTTTATTTCAAAATTATCCATCTTTTTAACTATTGATGGGTCACATCTATATTCCAATGTTCTAATGTAACTATATAATTGGACATGGATATTTGTGTACTGCTCCTGTGAATTGCTCATTATTCTTTGTGTTACGGTTCTACCGCTATGTCATAGCTTTCTTATGTCAACAGTCTATTAAACCATTCTTGTGGGGATGCTTGTATTTTGACACCACATCCTTTCTCTTTCGTTGTTGGAGGATTGTTTTCAAAGAATATGGAGATCTGGAATATATTGAAAAAACAACAATCTTCTTGCTCCAGTCACTTCATCTTCCTCCCCTTGTCTCTCTTTATAAAGGATAAAAGTAAAAAAATAAAAAATAAAAAAGTGGTGTGTGCGGGCACACAAACTCTTCTGAAAGGAAATATTTAGTTCGGGTCCTTTACCTTCACGAAGGCTTGTTATTGACATATGAAGAGTCTCAAGGGAAGCACATTGTGAACGGCTGGCTAGTTTTATGATGTTATCCAGAAACCCGGATGAGCAACATCAGCTGAATTTTAGGAATTTAAAAGCATTTTTATTTCTTTCATTTTGGGTTAAATGAGGATCGTGATGATTTATCACCATAGATCCTCGGATCCAAGGAAAGCGCCTATTCATTTTTATTTGACAATGTTTTCTTCATTGCTCTTTCTTGGTGTAAATTGAATCCTCTATTTCTTTTGTATAGTTTTTTTATTTTTTTATTATTTTATTTTATATACACACATCAATGATATCCCACTCCCCCCCACACCCTCCAAAAAAAAAAAAAAAAAAACAAGTTAATAATGACCTTTTAATAATTTGACTCCTAATTTTCTACTTTTGTGCAGGCTGAATTTCAGAATGTCATTGATTCCATTTCTACAGTCAGGAAAGCAGCGTGCTTGTCTGCAAGTATATCTTGGAATCCAAATCGTGGTGAAAGACAGCAATCGAGTTTTGTTTTGGCTTTTCGTTCGGATACACCACAGCTTGATTCTGCCAAGGTAATCTAAGTTCTTCTGATCCCATTACTGCACTCAAAATTGTGATATGACCTGCTGCTCACAGCATATTGGTCAGTCCACGATGATTGCATACTATATTTAATATGTTATTTGTCCTCCATAGGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTTGCAGAGTTGGCTTTGGAAGCAGACAAAGGTGATGGGGTTTATGCTGTTGCGTGGGCACAAAATATTGGAAGGTAATGGACTAATTCCTAAAGGAGCTTCATATAATTGGTGTATCTGTGGTGTATAATTTTGAAACACATAGGTTCAGCAGATATATCCTTGTTCATCATGTAGTCCTTCAATTTCTTTACAGTTGTCACAAACTTCCCAGGGCAATTCCTGGTAACTGTTTGAAAGAATCACCACAATGAGCTTGATATGACCAAATTCATTCACGTGTCTACTTGGAATTCTTAAAAAACAGTGAATAAGCTTCAGCAATAATAATATTAATTGTTCTTGAATATAATTTAGGCCATATGAGGTAATAGCTGTTGCAACCCAGAAAGGAATTGCAATATGGCGCCTCGGATTAAACCCGGATTCAGATGGAAGGCTCTCAACAGAACGAGTTGCTCTGCTTTCTGGGCATAACGGCGAGGTATCTCTTCAAAATTTCTCTCTGTTCTCTCATTCCCCCTTCTTTTCATTTATATTTCTTGAAAATCCAAGATGGATGCATTTGAAACGTCCATTTGTTAAGAGAAACCCCTAGTGTAGATAGAAGGAGTCCATTTGAATCCACGACGATGGAACCTTATAAAATAAATATGAAGATGATCGCTCATAATTGACTACAAATGTTGCTACAATTTAGTTGATATGGTTCCATGAACTGCGTGTTTTAGATTTTGTTCTCTTTTGATTATTCTTAGATAGGAGGGAAGAGGTGGTGTTGCTAATTGATGGTCATGTTTTCACTTGCACTGTCAGGTGTGGGACATGGAGTGGGACATGGGTGGTATGACATTAGCATCAACAGGAAAGGATGGGATGGTCCGGTTATGGCAATCCAACCTCAATGGTGTTTGGCACCAACATGCTGCATTTGAGCCCACTTCTTAACCTTGAAAACGTTTTGTTTCTCTATGATGTAACCTCTTCCTGTATTCGTTGTTAGGAAGAATTTTCAAATAACTTATCTGTCTTGCTGAGTGGGGTGCTTTGATTAGTGATGTCTTACTGGAGACCTATCTTTTATTTTAACAAATTTCTCTTGCTGAGTTGTGATTTTCGGTTGCTTAAGAGGTATATAGTCAACACGTACACAGGAAGAATAACTGACTAGAGAGAGTTGAGAATTGAGTTTTAAGATGAGATGCTTATGAATTTGAAGGAAAATAATTAGTATAACTAAGGATAATATAGTATTTCCGTCCTCCTCGAAAAGA ACAAAACCGAAATCAAAGGGGTTTTGTTGGAGCAGACGAGGGCGCGAAATAGAGAATTGAGATGGAGAAAGCTATGGCGACCTTCGACAAAGGCACGGTTTGTTCGGCTTGGAACTACTCCGCCAGCAGATTAGTCACTGGTTCGGCGGACGGAACCGTAGTCATCTTCGATTCTCTCGACCCTTCTTCCTCATCCACATCCTTAACTCGCACTTCAAACTTCAAGGCTCATGAGACTGCAATATTTAAGATTGTTTGGGTCCCTCCAGAGTATGGTGATTCTATTGCATGCATTTGTTCAGATGGAAGTTCGTCATTGTGGGAGGAGGTTGTTGAAGATGCCCAGCCTCTGCAGTGGAAGCTATCCAAACACTTCAAAAGTAATTCATCTCAAATCATAGACATCCAATTTGGAAATTCCTCTTCTGGTCTGAAAATGATTGCAGCATTTTCTGATGGCAATGTAAAAGTTTATGAGCTTATGGATCCTTTGGATTTGAAGAGTTGGCAACTTCAGGCTGAATTTCAGAATGTCATTGATTCCATTTCTACAGTCAGGAAAGCAGCGTGCTTGTCTGCAAGTATATCTTGGAATCCAAATCGTGGTGAAAGACAGCAATCGAGTTTTGTTTTGGCTTTTCGTTCGGATACACCACAGCTTGATTCTGCCAAGGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTTGCAGAGTTGGCTTTGGAAGCAGACAAAGGTGATGGGGTTTATGCTGTTGCGTGGGCACAAAATATTGGAAGGCCATATGAGGTAATAGCTGTTGCAACCCAGAAAGGAATTGCAATATGGCGCCTCGGATTAAACCCGGATTCAGATGGAAGGCTCTCAACAGAACGAGTTGCTCTGCTTTCTGGGCATAACGGCGAGGTGTGGGACATGGAGTGGGACATGGGTGGTATGACATTAGCATCAACAGGAAAGGATGGGATGGTCCGGTTATGGCAATCCAACCTCAATGGTGTTTGGCACCAACATGCTGCATTTGAGCCCACTTCTTAACCTTGAAAACGTTTTGTTTCTCTATGATGTAACCTCTTCCTGTATTCGTTGTTAGGAAGAATTTTCAAATAACTTATCTGTCTTGCTGAGTGGGGTGCTTTGATTAGTGATGTCTTACTGGAGACCTATCTTTTATTTTAACAAATTTCTCTTGCTGAGTTGTGATTTTCGGTTGCTTAAGAGGTATATAGTCAACACGTACACAGGAAGAATAACTGACTAGAGAGAGTTGAGAATTGAGTTTTAAGATGAGATGCTTATGAATTTGAAGGAAAATAATTAGTATAACTAAGGATAATATAGTATTTCCGTCCTCCTCGAAAAGA ATGGAGAAAGCTATGGCGACCTTCGACAAAGGCACGGTTTGTTCGGCTTGGAACTACTCCGCCAGCAGATTAGTCACTGGTTCGGCGGACGGAACCGTAGTCATCTTCGATTCTCTCGACCCTTCTTCCTCATCCACATCCTTAACTCGCACTTCAAACTTCAAGGCTCATGAGACTGCAATATTTAAGATTGTTTGGGTCCCTCCAGAGTATGGTGATTCTATTGCATGCATTTGTTCAGATGGAAGTTCGTCATTGTGGGAGGAGGTTGTTGAAGATGCCCAGCCTCTGCAGTGGAAGCTATCCAAACACTTCAAAAGTAATTCATCTCAAATCATAGACATCCAATTTGGAAATTCCTCTTCTGGTCTGAAAATGATTGCAGCATTTTCTGATGGCAATGTAAAAGTTTATGAGCTTATGGATCCTTTGGATTTGAAGAGTTGGCAACTTCAGGCTGAATTTCAGAATGTCATTGATTCCATTTCTACAGTCAGGAAAGCAGCGTGCTTGTCTGCAAGTATATCTTGGAATCCAAATCGTGGTGAAAGACAGCAATCGAGTTTTGTTTTGGCTTTTCGTTCGGATACACCACAGCTTGATTCTGCCAAGGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTTGCAGAGTTGGCTTTGGAAGCAGACAAAGGTGATGGGGTTTATGCTGTTGCGTGGGCACAAAATATTGGAAGGCCATATGAGGTAATAGCTGTTGCAACCCAGAAAGGAATTGCAATATGGCGCCTCGGATTAAACCCGGATTCAGATGGAAGGCTCTCAACAGAACGAGTTGCTCTGCTTTCTGGGCATAACGGCGAGGTGTGGGACATGGAGTGGGACATGGGTGGTATGACATTAGCATCAACAGGAAAGGATGGGATGGTCCGGTTATGGCAATCCAACCTCAATGGTGTTTGGCACCAACATGCTGCATTTGAGCCCACTTCTTAA MEKAMATFDKGTVCSAWNYSASRLVTGSADGTVVIFDSLDPSSSSTSLTRTSNFKAHETAIFKIVWVPPEYGDSIACICSDGSSSLWEEVVEDAQPLQWKLSKHFKSNSSQIIDIQFGNSSSGLKMIAAFSDGNVKVYELMDPLDLKSWQLQAEFQNVIDSISTVRKAACLSASISWNPNRGERQQSSFVLAFRSDTPQLDSAKVWEFDQAHQRWLPVAELALEADKGDGVYAVAWAQNIGRPYEVIAVATQKGIAIWRLGLNPDSDGRLSTERVALLSGHNGEVWDMEWDMGGMTLASTGKDGMVRLWQSNLNGVWHQHAAFEPTS Homology
BLAST of Carg13060 vs. NCBI nr
Match: KAG7031165.1 (Protein SEH1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 669.5 bits (1726), Expect = 1.5e-188 Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
BLAST of Carg13060 vs. NCBI nr
Match: KAG6600526.1 (Protein SEH1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 667.2 bits (1720), Expect = 7.5e-188 Identity = 325/327 (99.39%), Postives = 326/327 (99.69%), Query Frame = 0
BLAST of Carg13060 vs. NCBI nr
Match: XP_022942103.1 (protein SEH1 [Cucurbita moschata]) HSP 1 Score: 666.4 bits (1718), Expect = 1.3e-187 Identity = 325/327 (99.39%), Postives = 326/327 (99.69%), Query Frame = 0
BLAST of Carg13060 vs. NCBI nr
Match: XP_023547085.1 (protein SEH1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 663.3 bits (1710), Expect = 1.1e-186 Identity = 323/327 (98.78%), Postives = 324/327 (99.08%), Query Frame = 0
BLAST of Carg13060 vs. NCBI nr
Match: XP_022981824.1 (protein SEH1 [Cucurbita maxima]) HSP 1 Score: 662.5 bits (1708), Expect = 1.8e-186 Identity = 322/327 (98.47%), Postives = 325/327 (99.39%), Query Frame = 0
BLAST of Carg13060 vs. ExPASy Swiss-Prot
Match: Q93VR9 (Protein SEH1 OS=Arabidopsis thaliana OX=3702 GN=SEH1 PE=1 SV=1) HSP 1 Score: 445.3 bits (1144), Expect = 6.1e-124 Identity = 204/325 (62.77%), Postives = 258/325 (79.38%), Query Frame = 0
BLAST of Carg13060 vs. ExPASy Swiss-Prot
Match: C1BK83 (Nucleoporin SEH1 OS=Osmerus mordax OX=8014 GN=seh1l PE=2 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 3.8e-33 Identity = 92/314 (29.30%), Postives = 159/314 (50.64%), Query Frame = 0
BLAST of Carg13060 vs. ExPASy Swiss-Prot
Match: Q6GNF1 (Nucleoporin SEH1-B OS=Xenopus laevis OX=8355 GN=seh1l-b PE=2 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 1.2e-31 Identity = 83/314 (26.43%), Postives = 153/314 (48.73%), Query Frame = 0
BLAST of Carg13060 vs. ExPASy Swiss-Prot
Match: Q4FZW5 (Nucleoporin SEH1-A OS=Xenopus laevis OX=8355 GN=seh1l-a PE=2 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 2.7e-31 Identity = 83/314 (26.43%), Postives = 153/314 (48.73%), Query Frame = 0
BLAST of Carg13060 vs. ExPASy Swiss-Prot
Match: Q5U4Y8 (Nucleoporin SEH1 OS=Xenopus tropicalis OX=8364 GN=seh1l PE=2 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 3.5e-31 Identity = 83/314 (26.43%), Postives = 152/314 (48.41%), Query Frame = 0
BLAST of Carg13060 vs. ExPASy TrEMBL
Match: A0A6J1FTY0 (protein SEH1 OS=Cucurbita moschata OX=3662 GN=LOC111447274 PE=3 SV=1) HSP 1 Score: 666.4 bits (1718), Expect = 6.2e-188 Identity = 325/327 (99.39%), Postives = 326/327 (99.69%), Query Frame = 0
BLAST of Carg13060 vs. ExPASy TrEMBL
Match: A0A6J1J2X1 (protein SEH1 OS=Cucurbita maxima OX=3661 GN=LOC111480853 PE=3 SV=1) HSP 1 Score: 662.5 bits (1708), Expect = 8.9e-187 Identity = 322/327 (98.47%), Postives = 325/327 (99.39%), Query Frame = 0
BLAST of Carg13060 vs. ExPASy TrEMBL
Match: A0A6J1C5X6 (protein SEH1 OS=Momordica charantia OX=3673 GN=LOC111008268 PE=3 SV=1) HSP 1 Score: 604.0 bits (1556), Expect = 3.8e-169 Identity = 293/327 (89.60%), Postives = 308/327 (94.19%), Query Frame = 0
BLAST of Carg13060 vs. ExPASy TrEMBL
Match: A0A1S3BTS7 (protein SEH1 OS=Cucumis melo OX=3656 GN=LOC103493086 PE=3 SV=1) HSP 1 Score: 602.8 bits (1553), Expect = 8.4e-169 Identity = 292/327 (89.30%), Postives = 313/327 (95.72%), Query Frame = 0
BLAST of Carg13060 vs. ExPASy TrEMBL
Match: A0A0A0KWZ8 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G051460 PE=3 SV=1) HSP 1 Score: 587.0 bits (1512), Expect = 4.8e-164 Identity = 284/327 (86.85%), Postives = 306/327 (93.58%), Query Frame = 0
BLAST of Carg13060 vs. TAIR 10
Match: AT1G64350.1 (Transducin/WD40 repeat-like superfamily protein ) HSP 1 Score: 445.3 bits (1144), Expect = 4.3e-125 Identity = 204/325 (62.77%), Postives = 258/325 (79.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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