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Carg13053 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGCTAACCCTATAAAAGGGCACACCCTGGGAAGTTTGTATCCCCTCGTTTGCCCGTCGCGAGACTGCCTCTGTTTCCGTCTAGAGATTTCGTCTTCTTCTTCATTTCGCCCTTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGCATCGCAGAGAGAGATCTAACCTACTGTACAACATTTCTTGCGATTCTTCGCCTACAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGTTAGTTCTCTTTCTTTTATGTTTTATTTTGCATTTCTGTTCCAGATCTGTGTGCAATTCTTTGATCTCTGACCTTTGTTTATTCTTTGATTTCGGTAGAATATTTTGGCGTTATTTTTTAGGTTCGGTTTTTGAGTTAATTGGAATTTTGAAAATTTCGTTTCAAATCTTAACTTATGTCACTTTTTTGTCCCTTCAATTTATTGTGTATCCCTTCAATTTTTTGTGTGTTCAATCAAGCTTTTGGTGGATCCATTTTTGGTACACGTACCATCAATTTTAGTTATCCGCGGGCCAATTTGAGAAATTTAAAAAGAAAAAAAAAACCTATTTTCATGTAACCATAAAAATGGAAAAAGTTTCTTAATAGTTTCAATAATTAATAAACATCCCATTCCGAAGTGAAATTAAACCAATTGTCATTATCAGACTAAATATATGGTTTTACTTCTTTTTTCTGCACTTTCTAAATTTATCAAGAAATTTAGCTGCATTGCTCCTTGATTAATTAAATCACACGAGCCTTACATTACAATGTTTTCTACTCAATTACTAGGAGCGGTTTGGGCATTGGCTTGGATTGGGTTCTAAATCCATATCCATGTTTGGTTGAAATAACAAACTCTCTTAAAATCTATGGATACCCCTCGAAATCTATGGTCTCCGTTGAAATTACAATAATTGAGGGTCCACCACTTTTGTTTCCATTTTCTCACAATTATGGTGGTTCCTACCATTTTTGCTTGGGTCTCGTCATTTGTTTAATTAAAATGCAGGGTTATATTATCTTAGTTCAAAATATGGTTAATGTTGAAAAATGAAAAGATCAGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCAACTTCTAGAAGCATAATATAGTATTTGGGAGTTTAGTTAGAAGTGGCAATGGGTTCTTCTCTTGCTGCATCCTTTCCTGTTTCTGTTTTATTTATTTATGAGATCATCATCATCATCATCCTCACACATTTCTTCTATGTACATTCTCCTCATTTTTAAATGACATTTATTGGCTTTCCCTTTTTCCCCCTTTCTTCTCCCCTTCAATTTTGTACCCAAATAACATAAAAAATATTCTCTTCTTAATGTTACTAATATATTT AAAAGCTAACCCTATAAAAGGGCACACCCTGGGAAGTTTGTATCCCCTCGTTTGCCCGTCGCGAGACTGCCTCTGTTTCCGTCTAGAGATTTCGTCTTCTTCTTCATTTCGCCCTTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGCATCGCAGAGAGAGATCTAACCTACTGTACAACATTTCTTGCGATTCTTCGCCTACAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCAACTTCTAGAAGCATAATATAGTATTTGGGAGTTTAGTTAGAAGTGGCAATGGGTTCTTCTCTTGCTGCATCCTTTCCTGTTTCTGTTTTATTTATTTATGAGATCATCATCATCATCATCCTCACACATTTCTTCTATGTACATTCTCCTCATTTTTAAATGACATTTATTGGCTTTCCCTTTTTCCCCCTTTCTTCTCCCCTTCAATTTTGTACCCAAATAACATAAAAAATATTCTCTTCTTAATGTTACTAATATATTT ATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCAACTTCTAG MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF Homology
BLAST of Carg13053 vs. NCBI nr
Match: KAG7031172.1 (Arabinogalactan peptide 20 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 137.1 bits (344), Expect = 6.2e-29 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of Carg13053 vs. NCBI nr
Match: KAG6600532.1 (Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 137.1 bits (344), Expect = 6.2e-29 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of Carg13053 vs. NCBI nr
Match: XP_022941572.1 (arabinogalactan peptide 22-like [Cucurbita moschata]) HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28 Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0
BLAST of Carg13053 vs. NCBI nr
Match: XP_023522233.1 (arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28 Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of Carg13053 vs. NCBI nr
Match: XP_022985432.1 (arabinogalactan peptide 20 [Cucurbita maxima]) HSP 1 Score: 118.2 bits (295), Expect = 3.0e-23 Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 0
BLAST of Carg13053 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 5.3e-15 Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 0
BLAST of Carg13053 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 4.5e-14 Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0
BLAST of Carg13053 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 1.3e-13 Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 0
BLAST of Carg13053 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 7.1e-12 Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 0
BLAST of Carg13053 vs. ExPASy TrEMBL
Match: A0A6J1FMT5 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111446885 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 8.7e-29 Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0
BLAST of Carg13053 vs. ExPASy TrEMBL
Match: A0A6J1J4V7 (arabinogalactan peptide 20 OS=Cucurbita maxima OX=3661 GN=LOC111483439 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23 Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 0
BLAST of Carg13053 vs. ExPASy TrEMBL
Match: A0A6J1ETC6 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111437536 PE=4 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 3.2e-23 Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 0
BLAST of Carg13053 vs. ExPASy TrEMBL
Match: A0A6J1C4C2 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111008162 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21 Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 0
BLAST of Carg13053 vs. ExPASy TrEMBL
Match: A0A0A0KZS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051380 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 3.3e-20 Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of Carg13053 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 ) HSP 1 Score: 81.3 bits (199), Expect = 3.7e-16 Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 0
BLAST of Carg13053 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 ) HSP 1 Score: 78.2 bits (191), Expect = 3.2e-15 Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0
BLAST of Carg13053 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 ) HSP 1 Score: 76.6 bits (187), Expect = 9.2e-15 Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 0
BLAST of Carg13053 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 ) HSP 1 Score: 70.9 bits (172), Expect = 5.1e-13 Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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