Carg13003 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13003
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Prenylated rab acceptor PRA1
Location	Carg_Chr10: 3270519 .. 3270995 (-)
RNA-Seq Expression	Carg13003
Synteny	Carg13003

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCTCTTCATTGCACCGCAACTCACTAACCGCCGATTCTGGAACTGTTTTCGATTCCAATCTTAATTCGTCTCTTTCCAGTAGCCTTGTATTCGACGAATCAATCGCCGGTTGTGCTCGAAATGGCGAGCTATCTATGGAGGAAGTACGCCGATTATCTCTACACCAAGTGGGAAAGAACGATTCTATGGGACATGGTTGATCCGTATAGGCGACCTAAATCGTTTACGCCTTTGGTTACCATCTATATTGCTGCCTTTTACACTGGAGTCGTCGGCGCTGCCATTACCGAGCAGCTATACAAGGTAATTTTGCCATTGTTGCTTCGATTGTTTTTCCCCAATTTATCGTTTAACTTGAGCGTGTTTATCCAAGTGCTTTTGATTCTATTCAATTGAGGGTGGTGATTAGGGTTTAATAATGCCTTGGCATGGGTTAAGTGGCTAAGGATTTTTTGTAATTATCATCTAGGTTTAA

mRNA sequence

AACCTCTTCATTGCACCGCAACTCACTAACCGCCGATTCTGGAACTGTTTTCGATTCCAATCTTAATTCGTCTCTTTCCAGTAGCCTTGTATTCGACGAATCAATCGCCGGTTGTGCTCGAAATGGCGAGCTATCTATGGAGGAAGTACGCCGATTATCTCTACACCAAGTGGGAAAGAACGATTCTATGGGACATGGTTGATCCGTATAGGCGACCTAAATCGTTTACGCCTTTGGTTACCATCTATATTGCTGCCTTTTACACTGGAGTCGTCGGCGCTGCCATTACCGAGCAGCTATACAAGGTTTAA

Coding sequence (CDS)

ATGGCGAGCTATCTATGGAGGAAGTACGCCGATTATCTCTACACCAAGTGGGAAAGAACGATTCTATGGGACATGGTTGATCCGTATAGGCGACCTAAATCGTTTACGCCTTTGGTTACCATCTATATTGCTGCCTTTTACACTGGAGTCGTCGGCGCTGCCATTACCGAGCAGCTATACAAGGTTTAA

Protein sequence

MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLYKV

Homology

[Close]

BLAST of Carg13003 vs. NCBI nr
Match: KAG7023654.1 (hypothetical protein SDJN02_14680 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60

Query: 61 KV 63
          KV
Sbjct: 61 KV 62

[Close]

BLAST of Carg13003 vs. NCBI nr
Match: KAG6589991.1 (hypothetical protein SDJN03_15414, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 3.7e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60
           MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY
Sbjct: 265 MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 324

Query: 61  K 62
           K
Sbjct: 325 K 325

[Close]

BLAST of Carg13003 vs. NCBI nr
Match: XP_022961093.1 (uncharacterized protein At4g29660 [Cucurbita moschata] >XP_022987918.1 uncharacterized protein At4g29660 [Cucurbita maxima] >XP_023516486.1 uncharacterized protein At4g29660 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 3.7e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Carg13003 vs. NCBI nr
Match: XP_038878275.1 (uncharacterized protein At4g29660 [Benincasa hispida])

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADY+YTKWERTILWDMVDPYRRPKSFTPLV+IYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Carg13003 vs. NCBI nr
Match: XP_012076909.1 (uncharacterized protein At4g29660 [Jatropha curcas] >KDP33823.1 hypothetical protein JCGZ_07394 [Jatropha curcas])

HSP 1 Score: 127.5 bits (319), Expect = 4.0e-26
Identity = 57/61 (93.44%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYA+YLYTKWERTILWDM+DPYRRPKSFTPLVTIYIAAFYTGV+G+AITEQLY
Sbjct: 1  MASYLWRKYAEYLYTKWERTILWDMIDPYRRPKSFTPLVTIYIAAFYTGVIGSAITEQLY 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Carg13003 vs. ExPASy Swiss-Prot
Match: Q94K18 (Uncharacterized protein At4g29660 OS=Arabidopsis thaliana OX=3702 GN=EMB2752 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-21
Identity = 43/59 (72.88%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 3  SYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLYK 62
          S LWRKYADY Y K+ER  +W+M++PYRRPK+FT L+TIY+AAFYTGV+GAA+TEQLYK
Sbjct: 6  SQLWRKYADYKYNKFERFAVWEMIEPYRRPKTFTTLITIYVAAFYTGVIGAAVTEQLYK 64

[Close]

BLAST of Carg13003 vs. ExPASy TrEMBL
Match: A0A6J1JKR6 (uncharacterized protein At4g29660 OS=Cucurbita maxima OX=3661 GN=LOC111485319 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Carg13003 vs. ExPASy TrEMBL
Match: A0A6J1HAW0 (uncharacterized protein At4g29660 OS=Cucurbita moschata OX=3662 GN=LOC111461707 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Carg13003 vs. ExPASy TrEMBL
Match: A0A067KFR3 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07394 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-26
Identity = 57/61 (93.44%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYA+YLYTKWERTILWDM+DPYRRPKSFTPLVTIYIAAFYTGV+G+AITEQLY
Sbjct: 1  MASYLWRKYAEYLYTKWERTILWDMIDPYRRPKSFTPLVTIYIAAFYTGVIGSAITEQLY 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Carg13003 vs. ExPASy TrEMBL
Match: A0A1S3BPK6 (uncharacterized protein At4g29660 OS=Cucumis melo OX=3656 GN=LOC103492316 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 57/61 (93.44%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYLYTKWE+T+LWDM+DPYRRPKSFTPLV+IYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Carg13003 vs. ExPASy TrEMBL
Match: A0A6J1D1D0 (uncharacterized protein At4g29660 OS=Momordica charantia OX=3673 GN=LOC111016456 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-26
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADY+YTKWERTILWDMVDPYRRPKSFTPLV+IYIAAFY+GVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYSGVVGAAITEQLY 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of Carg13003 vs. TAIR 10
Match: AT4G29660.1 (embryo defective 2752 )

HSP 1 Score: 101.3 bits (251), Expect = 2.9e-22
Identity = 43/59 (72.88%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 3  SYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLYK 62
          S LWRKYADY Y K+ER  +W+M++PYRRPK+FT L+TIY+AAFYTGV+GAA+TEQLYK
Sbjct: 6  SQLWRKYADYKYNKFERFAVWEMIEPYRRPKTFTTLITIYVAAFYTGVIGAAVTEQLYK 64

The following BLAST results are available for this feature:

BLAST of Carg13003 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023654.1	1.6e-27	100.00	hypothetical protein SDJN02_14680 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6589991.1	3.7e-27	100.00	hypothetical protein SDJN03_15414, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961093.1	3.7e-27	100.00	uncharacterized protein At4g29660 [Cucurbita moschata] >XP_022987918.1 uncharact...	[more]
XP_038878275.1	2.4e-26	96.72	uncharacterized protein At4g29660 [Benincasa hispida]	[more]
XP_012076909.1	4.0e-26	93.44	uncharacterized protein At4g29660 [Jatropha curcas] >KDP33823.1 hypothetical pro...	[more]

BLAST of Carg13003 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94K18	4.1e-21	72.88	Uncharacterized protein At4g29660 OS=Arabidopsis thaliana OX=3702 GN=EMB2752 PE=...	[more]

BLAST of Carg13003 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JKR6	1.8e-27	100.00	uncharacterized protein At4g29660 OS=Cucurbita maxima OX=3661 GN=LOC111485319 PE...	[more]
A0A6J1HAW0	1.8e-27	100.00	uncharacterized protein At4g29660 OS=Cucurbita moschata OX=3662 GN=LOC111461707 ...	[more]
A0A067KFR3	2.0e-26	93.44	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07394 PE=4 SV=1	[more]
A0A1S3BPK6	2.6e-26	93.44	uncharacterized protein At4g29660 OS=Cucumis melo OX=3656 GN=LOC103492316 PE=4 S...	[more]
A0A6J1D1D0	3.3e-26	95.08	uncharacterized protein At4g29660 OS=Momordica charantia OX=3673 GN=LOC111016456...	[more]

BLAST of Carg13003 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29660.1	2.9e-22	72.88	embryo defective 2752	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037759	Uncharacterized protein At4g29660-like	PANTHER	PTHR37898	OS05G0540200 PROTEIN	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13003-RA	Carg13003-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008168	methyltransferase activity