Carg12985 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12985
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein of unknown function (DUF3511)
Location	Carg_Chr10: 3384380 .. 3384739 (-)
RNA-Seq Expression	Carg12985
Synteny	Carg12985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTACAAATCGAACTCATATACGGATGGGAGAATGCAGATTGAGAGCTACAATGGAAACGAAGCAAGAGGAGGTAATGTTTCCGGCGGAGATTTTCGTTGTTACAGTGCTTCGTATGCTTCGTCTGGAAACCCTAATCAAACGCAGATGGCTAACGATTTGAAGCTCAAGAAAGGGAAATCGACGAACGGATTTTCGTCGAAGAGTTGGAGTTTCAACGATCCTGAGATTCAGAGAAAGAAAAGAGTTGCTAGCTACAAGGTTTATTCTGTGGAAGGCAAAGTCAAAGGATCTATAAGAAAGAGCTTCAGATGGTTCAAGGAACGATGCTCTCGTGTTGTGTTTGGATGGTAG

mRNA sequence

ATGGCGGATTACAAATCGAACTCATATACGGATGGGAGAATGCAGATTGAGAGCTACAATGGAAACGAAGCAAGAGGAGGTAATGTTTCCGGCGGAGATTTTCGTTGTTACAGTGCTTCGTATGCTTCGTCTGGAAACCCTAATCAAACGCAGATGGCTAACGATTTGAAGCTCAAGAAAGGGAAATCGACGAACGGATTTTCGTCGAAGAGTTGGAGTTTCAACGATCCTGAGATTCAGAGAAAGAAAAGAGTTGCTAGCTACAAGGTTTATTCTGTGGAAGGCAAAGTCAAAGGATCTATAAGAAAGAGCTTCAGATGGTTCAAGGAACGATGCTCTCGTGTTGTGTTTGGATGGTAG

Coding sequence (CDS)

ATGGCGGATTACAAATCGAACTCATATACGGATGGGAGAATGCAGATTGAGAGCTACAATGGAAACGAAGCAAGAGGAGGTAATGTTTCCGGCGGAGATTTTCGTTGTTACAGTGCTTCGTATGCTTCGTCTGGAAACCCTAATCAAACGCAGATGGCTAACGATTTGAAGCTCAAGAAAGGGAAATCGACGAACGGATTTTCGTCGAAGAGTTGGAGTTTCAACGATCCTGAGATTCAGAGAAAGAAAAGAGTTGCTAGCTACAAGGTTTATTCTGTGGAAGGCAAAGTCAAAGGATCTATAAGAAAGAGCTTCAGATGGTTCAAGGAACGATGCTCTCGTGTTGTGTTTGGATGGTAG

Protein sequence

MADYKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKKGKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFGW

Homology

[Close]

BLAST of Carg12985 vs. NCBI nr
Match: KAG6590010.1 (hypothetical protein SDJN03_15433, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023672.1 hypothetical protein SDJN02_14698, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.9 bits (616), Expect = 2.8e-60
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MADYKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK 60
           MADYKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK
Sbjct: 1   MADYKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK 60

Query: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFGW 120
           GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFGW
Sbjct: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFGW 119

[Close]

BLAST of Carg12985 vs. NCBI nr
Match: XP_022960940.1 (uncharacterized protein LOC111461592 [Cucurbita moschata])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MADYKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK 60
           MAD+KSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK
Sbjct: 1   MADFKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK 60

Query: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFGW 120
           GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGS+RKSFRWFKE+CSR VFGW
Sbjct: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSLRKSFRWFKEQCSRAVFGW 119

[Close]

BLAST of Carg12985 vs. NCBI nr
Match: XP_022987910.1 (uncharacterized protein LOC111485312 [Cucurbita maxima])

HSP 1 Score: 229.2 bits (583), Expect = 1.9e-56
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MADYKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK 60
           MAD+KSNSYTDGRMQIESYNGNEARG NVSGGDFR YSASYASS NPNQTQM+NDLKLKK
Sbjct: 1   MADFKSNSYTDGRMQIESYNGNEARGPNVSGGDFRSYSASYASSANPNQTQMSNDLKLKK 60

Query: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFGW 120
           GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGS+RKSFRWFKERCSRVVFGW
Sbjct: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSLRKSFRWFKERCSRVVFGW 119

[Close]

BLAST of Carg12985 vs. NCBI nr
Match: XP_023516388.1 (uncharacterized protein LOC111780266 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 1.9e-56
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MADYKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK 60
           MAD+KSNSYTDGRMQIESYNGNEARG  VSGGDFRCYSASYASS NPNQTQ ANDLKLKK
Sbjct: 1   MADFKSNSYTDGRMQIESYNGNEARGATVSGGDFRCYSASYASSVNPNQTQTANDLKLKK 60

Query: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFGW 120
           GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGS+RKSFRWFKERCSRVVFGW
Sbjct: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSLRKSFRWFKERCSRVVFGW 119

[Close]

BLAST of Carg12985 vs. NCBI nr
Match: XP_038878627.1 (uncharacterized protein LOC120070815 [Benincasa hispida])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 100/123 (81.30%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 1   MADYKSNSYTDGRMQIESYNGNEARGGNVSG----GDFRCYSASYASSGNPNQTQMANDL 60
           MAD+ S SY DGRMQI++Y+GNE+R  N SG     DFRCYSASYASS NPNQTQM NDL
Sbjct: 1   MADFNSKSYPDGRMQIQTYHGNESRTTNGSGVMGMQDFRCYSASYASSANPNQTQMGNDL 60

Query: 61  KLKKGKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVV 120
           KLKKGKSTNGFSSKSWSFNDPE+QRK+RVASYKVY+VEGKVKGSIRKSFRW KERCSRVV
Sbjct: 61  KLKKGKSTNGFSSKSWSFNDPEMQRKRRVASYKVYTVEGKVKGSIRKSFRWLKERCSRVV 120

[Close]

BLAST of Carg12985 vs. ExPASy TrEMBL
Match: A0A6J1HAI7 (uncharacterized protein LOC111461592 OS=Cucurbita moschata OX=3662 GN=LOC111461592 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 5.7e-59
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MADYKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK 60
           MAD+KSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK
Sbjct: 1   MADFKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK 60

Query: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFGW 120
           GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGS+RKSFRWFKE+CSR VFGW
Sbjct: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSLRKSFRWFKEQCSRAVFGW 119

[Close]

BLAST of Carg12985 vs. ExPASy TrEMBL
Match: A0A6J1JI43 (uncharacterized protein LOC111485312 OS=Cucurbita maxima OX=3661 GN=LOC111485312 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.2e-57
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MADYKSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLKK 60
           MAD+KSNSYTDGRMQIESYNGNEARG NVSGGDFR YSASYASS NPNQTQM+NDLKLKK
Sbjct: 1   MADFKSNSYTDGRMQIESYNGNEARGPNVSGGDFRSYSASYASSANPNQTQMSNDLKLKK 60

Query: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFGW 120
           GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGS+RKSFRWFKERCSRVVFGW
Sbjct: 61  GKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSLRKSFRWFKERCSRVVFGW 119

[Close]

BLAST of Carg12985 vs. ExPASy TrEMBL
Match: A0A6J1HTT0 (uncharacterized protein LOC111467745 OS=Cucurbita maxima OX=3661 GN=LOC111467745 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.0e-47
Identity = 102/124 (82.26%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 1   MADYKSNSYTDGRMQIESYNGNEARGG-NVSGG----DFRCYSASYASSGNPNQTQMAND 60
           M D+KSNSY DGRMQIE+Y GNE+RGG N SGG    DFRCYSASYASS NP  TQM ND
Sbjct: 1   MEDFKSNSYVDGRMQIENYYGNESRGGPNGSGGMGMQDFRCYSASYASSANP--TQMGND 60

Query: 61  LKLKKGKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRV 120
           LKLKKGKSTNGFSSKSWSFNDPE+QRK+RVASYKVY+VEGKVKGS RKSFRW KERCSR+
Sbjct: 61  LKLKKGKSTNGFSSKSWSFNDPEMQRKRRVASYKVYTVEGKVKGSFRKSFRWLKERCSRM 120

[Close]

BLAST of Carg12985 vs. ExPASy TrEMBL
Match: A0A6J1EZU0 (uncharacterized protein LOC111441046 OS=Cucurbita moschata OX=3662 GN=LOC111441046 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.0e-47
Identity = 102/124 (82.26%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 1   MADYKSNSYTDGRMQIESYNGNEARGG-NVSGG----DFRCYSASYASSGNPNQTQMAND 60
           M D+KSNSY DGRMQIE+Y GNE+RGG N SGG    DFRCYSASYASS NP  TQM ND
Sbjct: 1   MEDFKSNSYVDGRMQIENYYGNESRGGPNGSGGMGMQDFRCYSASYASSANP--TQMGND 60

Query: 61  LKLKKGKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRV 120
           LKLKKGKSTNGFSSKSWSFNDPE+QRK+RVASYKVY+VEGKVKGS RKSFRW KERCSR+
Sbjct: 61  LKLKKGKSTNGFSSKSWSFNDPEMQRKRRVASYKVYTVEGKVKGSFRKSFRWLKERCSRM 120

[Close]

BLAST of Carg12985 vs. ExPASy TrEMBL
Match: A0A0A0LYX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G589660 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.6e-47
Identity = 98/123 (79.67%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 1   MADYKSNSYTDGRMQIESYNGNEARGGNVSGG----DFRCYSASYASSGNPNQTQMANDL 60
           M D+ SNSY DGRMQI++Y+G E+R  N SG     DFRCYSASYASS NP++TQM NDL
Sbjct: 1   MDDFNSNSYPDGRMQIQTYHGTESRTPNGSGAMGMQDFRCYSASYASSANPSRTQMGNDL 60

Query: 61  KLKKGKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVV 120
           KLKKGKSTNGFSSKSWSFNDPE+QRK+RVASYKVYSVEGKVKGS+RKSFRW KERCSRVV
Sbjct: 61  KLKKGKSTNGFSSKSWSFNDPEMQRKRRVASYKVYSVEGKVKGSLRKSFRWLKERCSRVV 120

[Close]

BLAST of Carg12985 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-24
Identity = 64/120 (53.33%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 1   MADY-KSNSYTDGRMQIESYNGNEARGGNVSGGDFRCYSASYASSGNPNQTQMANDLKLK 60
           M D+ +   Y DG MQI+ Y+GN+       GGDFR YSASY +  N       N   +K
Sbjct: 1   MEDFGRQRPYGDGGMQIQPYHGNQ-------GGDFRSYSASYGTREN-------NIYDVK 60

Query: 61  KGKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFGW 120
           K KS     SKSW   DPE+QRKKRVASYK+Y VEGKVKGS R SFRW K+R ++VV+GW
Sbjct: 61  KEKSI--ARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGW 104

[Close]

BLAST of Carg12985 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-20
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 1   MADYKSNSYTDGR-MQIESYNGNEARGG--NVSGG---DFRCYSASYASSGNPNQTQMAN 60
           M DY+S SY DGR   ++ Y+ +    G  + SG    D R YS SY        T++  
Sbjct: 1   MEDYRSRSYGDGRTSDLQQYSAHRRSDGPDSFSGNGMQDLRSYSTSYTD----YPTRIPE 60

Query: 61  DLKLKKGKSTNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSR 117
           D   KKG+S+   SS SW F DP++QRKKRV SY+ Y+VEGK+KGS RKSF+W K++C++
Sbjct: 61  DQNPKKGRSS---SSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNK 115

[Close]

BLAST of Carg12985 vs. TAIR 10
Match: AT3G13910.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 77.4 bits (189), Expect = 8.6e-15
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 43  SSGNPNQTQMAND--LKLKKGKS---TNGFSSKSWSFNDPEIQRKKRVASYKVYSVEGKV 102
           S+G+ +QT   ND  LK+KK KS    +  +S+SWSF+DPE +RK+RVA YKVYSVE K+
Sbjct: 28  SAGDQSQT---NDYQLKIKKSKSVPNADRAASRSWSFSDPESRRKRRVAGYKVYSVEQKM 87

Query: 103 KGSIRKSFRWFKE 111
           KGSIRKSF+WFK+
Sbjct: 88  KGSIRKSFKWFKD 97

[Close]

BLAST of Carg12985 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-13
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 35  RCYSAS-YASSGNPNQTQMANDLKLKKGKSTNGFSSKSW-SFNDPEIQRKKRVASYKVYS 94
           R YS S Y +  NP    +  D    K K +N    K +    + EIQRKKRVASY VY 
Sbjct: 43  RSYSTSTYNAYQNPT---IVRDDSNNKSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYG 102

Query: 95  VEGKVKGSIRKSFRWFKERCSRVVFG 119
           VEG+VKGS++KSF+WFKE CS  V+G
Sbjct: 103 VEGRVKGSMKKSFKWFKETCSNAVYG 125

[Close]

BLAST of Carg12985 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 28/49 (57.14%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 70  KSWSFNDPEIQRKKRVASYKVYSVEGKVKGSIRKSFRWFKERCSRVVFG 119
           K W +NDPEI+RK+RVA YK+YS EGK+K ++RKS++W K +CS+++ G
Sbjct: 76  KGW-WNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

The following BLAST results are available for this feature:

BLAST of Carg12985 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590010.1	2.8e-60	100.00	hypothetical protein SDJN03_15433, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960940.1	1.2e-58	96.64	uncharacterized protein LOC111461592 [Cucurbita moschata]	[more]
XP_022987910.1	1.9e-56	94.96	uncharacterized protein LOC111485312 [Cucurbita maxima]	[more]
XP_023516388.1	1.9e-56	94.96	uncharacterized protein LOC111780266 [Cucurbita pepo subsp. pepo]	[more]
XP_038878627.1	1.2e-47	81.30	uncharacterized protein LOC120070815 [Benincasa hispida]	[more]

BLAST of Carg12985 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAI7	5.7e-59	96.64	uncharacterized protein LOC111461592 OS=Cucurbita moschata OX=3662 GN=LOC1114615...	[more]
A0A6J1JI43	9.2e-57	94.96	uncharacterized protein LOC111485312 OS=Cucurbita maxima OX=3661 GN=LOC111485312...	[more]
A0A6J1HTT0	5.0e-47	82.26	uncharacterized protein LOC111467745 OS=Cucurbita maxima OX=3661 GN=LOC111467745...	[more]
A0A6J1EZU0	5.0e-47	82.26	uncharacterized protein LOC111441046 OS=Cucurbita moschata OX=3662 GN=LOC1114410...	[more]
A0A0A0LYX7	6.6e-47	79.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G589660 PE=4 SV=1	[more]

BLAST of Carg12985 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11970.1	1.2e-24	53.33	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	4.0e-20	45.08	Protein of unknown function (DUF3511)	[more]
AT3G13910.1	8.6e-15	60.27	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	2.8e-13	50.00	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	1.5e-11	57.14	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 74..117 e-value: 9.4E-26 score: 89.4
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 1..119
None	No IPR available	PANTHER	PTHR33193:SF26	DUF3511 DOMAIN PROTEIN (DUF3511)	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12985-RA	Carg12985-RA	mRNA