Carg12827 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12827
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 5334181 .. 5335421 (-)
RNA-Seq ExpressionCarg12827
SyntenyCarg12827
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCGATGCTTCTGCTGCCCTGAAGAGAGTCCCAGACTGGTCCCAGATAATAGGTACTTCCCCCCACCATTGAAAATGAAAGAAAAAAGTAATTGATTTGCTTGTGTCAATTGTTGTGAGGTGCTGAAAAGTTTCTTATGTGACAAATTGAGGATACAAGTTTAGTTTTGCCTTGTAGAATAGAATAGTCATAGGTGGATGGATGAATGAATGAATTAATTAATTAGATCTCTGTAATTACTTTGATAAAATCCCACTTCCCATGTAGTGTTCTTGCTGCAAGATTTACCCACCAATGCCATAATGTTGTAACTATTGTATTCCATTCATGCTGTGTTTTTGCCATGATTTTGATTGTTCATTGCCTCACCATGTCCTCTCTGATTTGGAGGGAGGGGGTGTGTTCATCCACTTCTCTGATATGGTTGATGCTCTTAAAAAGTGGATATTCATACGATTTGATTGATGATAAGCTGAGTCTAAATTGGATATGAAATTCGAAACTCCATGTTTGGATGAAAAGGCTTATCCAAGAGACATTACGTTTGAATTGCATTGATTTCGATTGAGATTTGTCGCATAGCATTTAAACTTTTGACGTTCTAGTCGATATAACATATTCATAGATCGTGTTGCCACATTTCATATCCAATTTAGACTCAGCTTATCATCAATCAAATCATATGAATATCCACTTTCTAAAGCATCTACCATTTCAGAGAAGTGGATGGGGTGGGTGTTCATCATCTAATATGGTAGATGCTTTAGAAAGTGGATATTTATATGATTTGGTTGATGATAAGCTGAGTCTAAATTGGATATGAAATTCGAAACTCCATGTTTGGATGAAAAGGCTTATCCAAGAGAGATTACGTTTGAATTGCATTGATTTCGATTGAGATTTGTCGCATAGCATTTAAACTTTTGACGTTCTAGTCGATAATATAACATATTCATAGATCGTATTGCCACATTTCATATCCAATTTAGACTCAGCTTATTATCGATCAAATCATATGAATATCCACTTTCAAAAGCATCTACCATATCAGAGAAGTGGATGGGGCGGGTGTTCATCCACTTCTCTGATATGGTAGATGCTTTAAAAAGTGGGTATTCATATGATTTGGTTGATGATTAGCTTAGTCTAAATTGGATATGAAATTCGAAACTCCATGTTTGGATGAAAAGGCCTTATCCAAGAGAGATTACGTTCGAACTGTGATTGATTTCGATTGA

mRNA sequence

ATGTGCGATGCTTCTGCTGCCCTGAAGAGAGTCCCAGACTGGTCCCAGATAATAGATCGTATTGCCACATTTCATATCCAATTTAGACTCAGCTTATTATCGATCAAATCATATGAATATCCACTTTCAAAAGCATCTACCATATCAGAGAAGTGGATGGGGCGGGTGTTCATCCACTTCTCTGATATGTCTAAATTGGATATGAAATTCGAAACTCCATGTTTGGATGAAAAGGCCTTATCCAAGAGAGATTACGTTCGAACTGTGATTGATTTCGATTGA

Coding sequence (CDS)

ATGTGCGATGCTTCTGCTGCCCTGAAGAGAGTCCCAGACTGGTCCCAGATAATAGATCGTATTGCCACATTTCATATCCAATTTAGACTCAGCTTATTATCGATCAAATCATATGAATATCCACTTTCAAAAGCATCTACCATATCAGAGAAGTGGATGGGGCGGGTGTTCATCCACTTCTCTGATATGTCTAAATTGGATATGAAATTCGAAACTCCATGTTTGGATGAAAAGGCCTTATCCAAGAGAGATTACGTTCGAACTGTGATTGATTTCGATTGA

Protein sequence

MCDASAALKRVPDWSQIIDRIATFHIQFRLSLLSIKSYEYPLSKASTISEKWMGRVFIHFSDMSKLDMKFETPCLDEKALSKRDYVRTVIDFD
Homology
[Close]
BLAST of Carg12827 vs. NCBI nr
Match: KAG7024926.1 (hypothetical protein SDJN02_13746, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.4 bits (485), Expect = 3.4e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MCDASAALKRVPDWSQIIDRIATFHIQFRLSLLSIKSYEYPLSKASTISEKWMGRVFIHF 60
          MCDASAALKRVPDWSQIIDRIATFHIQFRLSLLSIKSYEYPLSKASTISEKWMGRVFIHF
Sbjct: 1  MCDASAALKRVPDWSQIIDRIATFHIQFRLSLLSIKSYEYPLSKASTISEKWMGRVFIHF 60

Query: 61 SDMSKLDMKFETPCLDEKALSKRDYVRTVIDFD 94
          SDMSKLDMKFETPCLDEKALSKRDYVRTVIDFD
Sbjct: 61 SDMSKLDMKFETPCLDEKALSKRDYVRTVIDFD 93

The following BLAST results are available for this feature:
BLAST of Carg12827 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024926.13.4e-45100.00hypothetical protein SDJN02_13746, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg12827 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12827 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12827 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12827-RACarg12827-RAmRNA