Carg12790 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12790
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Histone H2A
Location	Carg_Chr09: 5100382 .. 5101342 (+)
RNA-Seq Expression	Carg12790
Synteny	Carg12790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTATTTATTGCTCTCTCTTTCGCGACCTCGCCGGAAAATTGCTTCCTATTTTCTCTTCAATTCTTTCGTTCTTCTTCTCCGTACAACAGATCTCAACTAATGGCCGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACTTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCTGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTTGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTATGATATTTTGGAACTTTTTCCTTTTCTTTTGGTTTCTATCGCTGTGTGGGTTTTGTGAAATTGAGCACGCTGTATGGATCTAGGGTTTCGAATTTTCCCCCAATTCGTGTCCTCTTTCTCAATTTCATCATAGGCGTTTGAGAATTAGATTGATTTTCTTGCTTTTGAGATTAACTCGAAGGATTCTTGATGTTTAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGATGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTACCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGGTGATGATGAACCCTAAATTTGTTTGTAGTAGGAACAGATGAACTGAATCATTGAATGCTCTGATGAAATTTGGCTCCGGTCATGACAGTGCTCTCTCTTACTCTGTTAGATTTTTCAATTTCCCCCCTTCTTTTGACATTGTTTTTCTTAGATTACGGATCTTTGCTTATGAAATTTGTAACAGTTCAAGGAGTAGTGCTAGAATTTCACTAGTGTTGTGAATATCATCATCATCATCTATTAATATCACCTCCTACTTGTTCTTCAT

mRNA sequence

GATTATTTATTGCTCTCTCTTTCGCGACCTCGCCGGAAAATTGCTTCCTATTTTCTCTTCAATTCTTTCGTTCTTCTTCTCCGTACAACAGATCTCAACTAATGGCCGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACTTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCTGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTTGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGATGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTACCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGGTGATGATGAACCCTAAATTTGTTTGTAGTAGGAACAGATGAACTGAATCATTGAATGCTCTGATGAAATTTGGCTCCGGTCATGACAGTGCTCTCTCTTACTCTGTTAGATTTTTCAATTTCCCCCCTTCTTTTGACATTGTTTTTCTTAGATTACGGATCTTTGCTTATGAAATTTGTAACAGTTCAAGGAGTAGTGCTAGAATTTCACTAGTGTTGTGAATATCATCATCATCATCTATTAATATCACCTCCTACTTGTTCTTCAT

Coding sequence (CDS)

ATGGCCGGTAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAAAAGGCCACTTCAAGGAGTAGTAAAGCCGGGTTGCAGTTTCCCGTCGGTCGTATTGCTCGTTTCCTCAAAGCCGGCAAGTACGCTGAACGTGTTGGTGCCGGTGCTCCGGTCTACCTTGCTGCCGTCCTTGAATACCTCGCCGCTGAGGTTTTGGAGCTCGCTGGAAACGCTGCTAGAGATAACAAGAAAACGCGTATTGTTCCTCGTCACATTCAGCTCGCTGTACGTAACGATGAGGAGCTAAGCAAGCTTTTGGGCGATGTGACTATTGCTAATGGCGGTGTTATGCCCAACATTCACAATCTGCTTCTACCCAAGAAAACAGGGACTTCATCTAAGAACGCTGGTGGTGATGATGAACCCTAA

Protein sequence

MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSSKNAGGDDEP

Homology

[Close]

BLAST of Carg12790 vs. NCBI nr
Match: XP_004151965.1 (histone H2A.6 [Cucumis sativus] >XP_008454570.1 PREDICTED: histone H2A.6 [Cucumis melo] >XP_022139360.1 histone H2A.6-like [Momordica charantia] >XP_022937039.1 histone H2A.6-like [Cucurbita moschata] >XP_022941439.1 histone H2A.6-like [Cucurbita moschata] >XP_022976601.1 histone H2A.6-like [Cucurbita maxima] >XP_022981666.1 histone H2A.6-like [Cucurbita maxima] >XP_023521617.1 histone H2A.6-like [Cucurbita pepo subsp. pepo] >XP_023535142.1 histone H2A.6-like [Cucurbita pepo subsp. pepo] >XP_038896809.1 histone H2A.6 [Benincasa hispida] >KAA0046438.1 putative histone H2A.1 [Cucumis melo var. makuwa] >KAG6592014.1 putative histone H2A.1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015223.1 putative histone H2A.1 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6607826.1 putative histone H2A.1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024889.1 putative histone H2A.1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]

BLAST of Carg12790 vs. NCBI nr
Match: XP_028761725.1 (histone H2A.6 [Prosopis alba])

HSP 1 Score: 251.5 bits (641), Expect = 4.0e-63
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTGTSSK AGGDD+
Sbjct: 121 KTGTSSKGAGGDDD 134

[Close]

BLAST of Carg12790 vs. NCBI nr
Match: KAF7822852.1 (histone H2A.6-like [Senna tora])

HSP 1 Score: 250.4 bits (638), Expect = 9.0e-63
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTGTSSK AGGDD+
Sbjct: 121 KTGTSSKGAGGDDD 134

[Close]

BLAST of Carg12790 vs. NCBI nr
Match: PON55943.1 (Histone H2A [Trema orientale] >PON61412.1 Histone H2A [Parasponia andersonii])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTGTSSK +GGDD+
Sbjct: 121 KTGTSSKASGGDDD 134

[Close]

BLAST of Carg12790 vs. NCBI nr
Match: XP_010092305.1 (histone H2A.6 [Morus notabilis] >EXB50939.1 putative histone H2A.1 [Morus notabilis])

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           KTG SSK AGGDD+
Sbjct: 121 KTGASSKAAGGDDD 134

[Close]

BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: A2YVE5 (Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-60
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G+S+K A  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]

BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: Q84NJ4 (Probable histone H2A.3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-60
Identity = 123/134 (91.79%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G+S+K A  DDE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]

BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: Q9C681 (Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.0e-60
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           KTG S  +A  D
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: A2YMC6 (Probable histone H2A.2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-60
Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G S+K A GDD+
Sbjct: 121 KAGGSAKAAAGDDD 134

[Close]

BLAST of Carg12790 vs. ExPASy Swiss-Prot
Match: Q6ZL42 (Probable histone H2A.2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-60
Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GSGAAKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDE 135
           K G S+K A GDD+
Sbjct: 121 KAGGSAKAAAGDDD 134

[Close]

BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A6J1IHB7 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111476948 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]

BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A6J1FA07 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111443457 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]

BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A5A7TUA9 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00010 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]

BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A0A0LD22 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_3G408540 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]

BLAST of Carg12790 vs. ExPASy TrEMBL
Match: A0A6J1CC40 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111010313 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGDDEP 136
           KTGTSSKNAGGDDEP
Sbjct: 121 KTGTSSKNAGGDDEP 135

[Close]

BLAST of Carg12790 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-61
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG+AKKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           KTG S  +A  D
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of Carg12790 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 231.9 bits (590), Expect = 3.1e-61
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G S
Sbjct: 121 KAGAS 125

[Close]

BLAST of Carg12790 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-61
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G+S
Sbjct: 121 KAGSS 125

[Close]

BLAST of Carg12790 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-61
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGAAKK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KTGTS 126
           K G+S
Sbjct: 121 KAGSS 125

[Close]

BLAST of Carg12790 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-59
Identity = 120/132 (90.91%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG AKK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KTGTSSKNAGGD 133
           K G S  +A  D
Sbjct: 121 KAGASKPSADED 132

The following BLAST results are available for this feature:

BLAST of Carg12790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151965.1	5.6e-65	100.00	histone H2A.6 [Cucumis sativus] >XP_008454570.1 PREDICTED: histone H2A.6 [Cucumi...	[more]
XP_028761725.1	4.0e-63	98.51	histone H2A.6 [Prosopis alba]	[more]
KAF7822852.1	9.0e-63	97.76	histone H2A.6-like [Senna tora]	[more]
PON55943.1	1.5e-62	97.76	Histone H2A [Trema orientale] >PON61412.1 Histone H2A [Parasponia andersonii]	[more]
XP_010092305.1	2.6e-62	97.76	histone H2A.6 [Morus notabilis] >EXB50939.1 putative histone H2A.1 [Morus notabi...	[more]

BLAST of Carg12790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2YVE5	1.5e-60	91.79	Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3...	[more]
Q84NJ4	1.5e-60	91.79	Probable histone H2A.3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0427700 ...	[more]
Q9C681	2.0e-60	93.18	Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1	[more]
A2YMC6	4.3e-60	91.04	Probable histone H2A.2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025469 PE=3...	[more]
Q6ZL42	4.3e-60	91.04	Probable histone H2A.2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0545400 ...	[more]

BLAST of Carg12790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHB7	2.7e-65	100.00	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111476948 PE=3 SV=1	[more]
A0A6J1FA07	2.7e-65	100.00	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111443457 PE=3 SV=1	[more]
A0A5A7TUA9	2.7e-65	100.00	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold543G00010 PE...	[more]
A0A0A0LD22	2.7e-65	100.00	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_3G408540 PE=3 SV=1	[more]
A0A6J1CC40	2.7e-65	100.00	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111010313 PE=3 SV=1	[more]

BLAST of Carg12790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51060.1	1.4e-61	93.18	histone H2A 10	[more]
AT5G54640.1	3.1e-61	97.60	Histone superfamily protein	[more]
AT4G27230.1	9.0e-61	96.80	histone H2A 2	[more]
AT4G27230.2	9.0e-61	96.80	histone H2A 2	[more]
AT3G20670.1	1.7e-59	90.91	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 73..87 score: 78.86 coord: 59..72 score: 89.46 coord: 101..119 score: 66.52 coord: 44..59 score: 90.36 coord: 15..37 score: 72.51
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..124 e-value: 7.4E-77 score: 271.3
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 9..121 e-value: 6.62501E-69 score: 201.41
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 93..127 e-value: 5.5E-19 score: 67.6
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 13..90 e-value: 2.1E-14 score: 54.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..129 e-value: 7.9E-65 score: 218.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 9..125
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..132
None	No IPR available	PANTHER	PTHR23430:SF286	HISTONE H2A.6	coord: 2..132
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 23..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12790-RA	Carg12790-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity