Carg12533 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12533
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	thaumatin-like protein
Location	Carg_Chr14: 529905 .. 532390 (+)
RNA-Seq Expression	Carg12533
Synteny	Carg12533

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAATCCCTTTATAGTGAAAGTGAAAGTGAAAGTGGTTCGTATCAACTAAGGGAAAAACTTGAGCAATGCAGCCTTTAAGTAATGCCTCTCTTTCCAAATCTCTATCATACGGATCATTATCAGCTAAATGTTTGGAAGTATCATCACCATTTGGCTGCCTGTTCATAAGTTTGAAACCATGCATTCCTCCCTGTTTCTCATCTTCTGTTTGGCAATCTCCATCTCACTTACAAGTAACTAAGCGTAATTCAAACACTTCTTCTTTCAATACCCTTCTTATTCACTTCATACACTAAGTTTTTCTCTTCTTGCAGGTGGAGAACAACTCATCTTAGCAAACAACTGCAATGAAAGTGTCTGGCCTGGAATACTCGGCAATTCAGGCCACCAGACGCCAATGGGTGGCGGTTTCCATCTCGGCAGAGGCAAGCACGTAGTGGTCGAAGTGCCGAAGAAGTGGTCAGGCAGGATTTGGGGCAGGCAAGGCTGTTCTTTTAGCCGTGAAGGAAAAGGCTCGTGCGACTCGGGAGACTGTTCAGGCAGATTACATTGTAGAGGCACTGCTGGTGTTCCTCCAGCCACTATTGTTGAAGTAACTCTGGGATCATCCATTTCACCAATGCATTACTATGATGTTAGCTTGGTAGATGGCTTCAACTTGCCTCTTTCAATGAAGCCAATTGGGGGTGGAATTGGCTGTGGCATTGCGTCCTGTGATATTGATGTCAACATTTTCTGTCCATCAGCATTGGAAGTGAAGAAGAACGGAAAAGTGGTGGGCTGCAAGAGCGCCTGTTTAGCCATGCAATCAGCCAAGTACTGCTGCACAGGGAAGTATGCTAACCCCAAAACCTGCAGACCCACTCTATTTGCTCATTTATTCAAAGCCATGTGCCCCAAGGCTTACACCTATGCTTTTGACGACCCGTCCAGCCTCCGTAAATGTAAGGTTTCGCGTTACGCCATCACATTCTGCCCTTCCATGTGAGGACGATTCCAGGTTACTGCAGAAAAAAGTCTACCATGACAGTACAAAAATAATGCCTTGCTGCAGAATTAGAAGCTCTTGTACGTTTTCTATCTTATTTTTGTTAGTTACTCAAGAAATAGACTCCAATAAGCATCTGTTGAAGATTTTGCATTCTATGTCAATATAAATATCCTGTTACGCATATTAGTTCAGCAAAGATTGGCAGGAGTAATAGCTTTCAACTAACCTATAAAACAGCAACAAGAGATTTTCAGCAAAGAAATTTGCATTCATTTGGATATCTTGTACAAAGGGCTCAGAAGGGACAAGATCTTCATGATTCTTTAGAGTGACACTTTCTGGATGAAACTCATGGTCAAAACAAAACAAAGACAGAATGACAACACTTTATTATGATTCCAAAGCCAACAAAATAGCTTAGAGTGTCAGTGACTTAAATTTAGCTCTAGAGTTCAAGCAAAGGAAGGAATTTCTCCTGATTACCAACACAAGTGCCTTCTTGTTCATGGCATCCATTGAGCATTAATAAATTTCAATACAGATATCAAATTACATTTTAGAATGGTCTTAAAGAGTCCAACTAGTTATGGAAACCAAACCTGAGATCGACATATACACAAAAGAAAGAAAGGCATTTACCATTGGCCACATCAGATAACTCAACATTTGCAGCTCATCCACCATATGGGAAATCTTCTTAGTATAAGAAATTGTTATACTACCTTCACTTATTATAAGTATTTAAGTATTCAAGAACAGATATGATTATTTTTGGACTTTTCTCTTAACGTTTTTAAAAAGCGTTTGCTAGGGAGAGGTTTCCACACCCTTATAAAGTATGTTTCATTCCCCTCTCCAACTAATGTGGATCTCACAATCCACCCCCTTCGGAGCCTAGCATCATCGCTGACACTTATTCCTCTCTCCAATCGATGTGGTATATGGCTCTATACCATTTGTAACCGCCCAAGCCCACCGCTAGCACATATTGTGCTCTTTGGACTTTCCCTCAAGGTTTTTAAAATGCATATGCTAGGGAGAAGTTTTTACGCCCTTACGAACAATGTTTCGTTGTCCTCTCCATCGGGATCTCACATTTCTCTTTCAAGTCGCAGCAGAAACCAAGTAAATTTAGGCAAATAAATTAGATCCCAAGAACTAGAAGGCCTTTTTGAGAGTATAAATTACGTTGCTTCATGACAATTACTTACGTGATCCGCTGGTATAACTCCATCATATGAATTGTTCCCTCCATGGGATTGATTACATCCACACTCGATCCTCCTCACAATCAAACTCAAGCAAGTTCAACCCAATCTATTCTAATTTTTGACAGTAGACGAAATGCATATTCAAGCAACAATATCACCAAAACTATACAACAATGACAAATTATGTACCGATTGTTACCATCTGGCATTGCTTAAACAATGTCTCGCTAGAGTTGGACGAGAACCCAGAATTTCCTGACATGCCATCAAAGACTTGA

mRNA sequence

ATGGATAAATCCCTTTATAGTGAAAGTGAAAGTGAAAGTGGTGGAGAACAACTCATCTTAGCAAACAACTGCAATGAAAGTGTCTGGCCTGGAATACTCGGCAATTCAGGCCACCAGACGCCAATGGGTGGCGGTTTCCATCTCGGCAGAGGCAAGCACACGAAATGCATATTCAAGCAACAATATCACCAAAACTATACAACAATGACAAATTATGTACCGATTGTTACCATCTGGCATTGCTTAAACAATGTCTCGCTAGAGTTGGACGAGAACCCAGAATTTCCTGACATGCCATCAAAGACTTGA

Coding sequence (CDS)

ATGGATAAATCCCTTTATAGTGAAAGTGAAAGTGAAAGTGGTGGAGAACAACTCATCTTAGCAAACAACTGCAATGAAAGTGTCTGGCCTGGAATACTCGGCAATTCAGGCCACCAGACGCCAATGGGTGGCGGTTTCCATCTCGGCAGAGGCAAGCACACGAAATGCATATTCAAGCAACAATATCACCAAAACTATACAACAATGACAAATTATGTACCGATTGTTACCATCTGGCATTGCTTAAACAATGTCTCGCTAGAGTTGGACGAGAACCCAGAATTTCCTGACATGCCATCAAAGACTTGA

Protein sequence

MDKSLYSESESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKHTKCIFKQQYHQNYTTMTNYVPIVTIWHCLNNVSLELDENPEFPDMPSKT

Homology

[Close]

BLAST of Carg12533 vs. NCBI nr
Match: KAG7017280.1 (Thaumatin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.1 bits (562), Expect = 4.4e-54
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDKSLYSESESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKHTKCIFKQ 60
           MDKSLYSESESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKHTKCIFKQ
Sbjct: 1   MDKSLYSESESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKHTKCIFKQ 60

Query: 61  QYHQNYTTMTNYVPIVTIWHCLNNVSLELDENPEFPDMPSKT 103
           QYHQNYTTMTNYVPIVTIWHCLNNVSLELDENPEFPDMPSKT
Sbjct: 61  QYHQNYTTMTNYVPIVTIWHCLNNVSLELDENPEFPDMPSKT 102

[Close]

BLAST of Carg12533 vs. NCBI nr
Match: XP_022935577.1 (thaumatin-like protein [Cucurbita moschata])

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 9  SESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 54
          S S + GEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH
Sbjct: 31 SISLTSGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 75

[Close]

BLAST of Carg12533 vs. NCBI nr
Match: XP_023528979.1 (thaumatin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 9  SESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 54
          S S + GEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH
Sbjct: 31 SISLTSGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 75

[Close]

BLAST of Carg12533 vs. NCBI nr
Match: KAG6580530.1 (Thaumatin-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 9  SESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 54
          S S + GEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH
Sbjct: 14 SISLTSGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 58

[Close]

BLAST of Carg12533 vs. NCBI nr
Match: XP_022983995.1 (thaumatin-like protein [Cucurbita maxima])

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 9  SESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 54
          S S + GEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH
Sbjct: 31 SISLTSGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 75

[Close]

BLAST of Carg12533 vs. ExPASy Swiss-Prot
Match: Q53MB8 (Thaumatin-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0706600 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 13 SGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGK 53
          +GG QLI+ NNC ESVWPG+LG +GH TP  GGFHLG G+
Sbjct: 26 NGGIQLIMVNNCGESVWPGLLGTAGHPTPQSGGFHLGAGE 65

[Close]

BLAST of Carg12533 vs. ExPASy TrEMBL
Match: A0A6J1J7G6 (thaumatin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482445 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.7e-15
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 9  SESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 54
          S S + GEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH
Sbjct: 31 SISLTSGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 75

[Close]

BLAST of Carg12533 vs. ExPASy TrEMBL
Match: A0A6J1F5Y8 (thaumatin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111442410 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.7e-15
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 9  SESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 54
          S S + GEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH
Sbjct: 31 SISLTSGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 75

[Close]

BLAST of Carg12533 vs. ExPASy TrEMBL
Match: A0A5D3DN64 (Thaumatin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001540 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 9  SESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 54
          S S + GEQLIL NNCNESVWPG+LGNSGH TPM GGFHLGRGKH
Sbjct: 31 SISLTSGEQLILVNNCNESVWPGLLGNSGHNTPMDGGFHLGRGKH 75

[Close]

BLAST of Carg12533 vs. ExPASy TrEMBL
Match: A0A1S3B5E2 (thaumatin-like protein OS=Cucumis melo OX=3656 GN=LOC103486371 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 9  SESESGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 54
          S S + GEQLIL NNCNESVWPG+LGNSGH TPM GGFHLGRGKH
Sbjct: 31 SISLTSGEQLILVNNCNESVWPGLLGNSGHNTPMDGGFHLGRGKH 75

[Close]

BLAST of Carg12533 vs. ExPASy TrEMBL
Match: A0A6J1CWI2 (thaumatin-like protein OS=Momordica charantia OX=3673 GN=LOC111015038 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 13 SGGEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKH 54
          + GEQLILANNC ESVWPGILGNSGHQTPM GGFHLG GKH
Sbjct: 39 TSGEQLILANNCKESVWPGILGNSGHQTPMDGGFHLGSGKH 79

[Close]

BLAST of Carg12533 vs. TAIR 10
Match: AT5G02140.1 (Pathogenesis-related thaumatin superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-10
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 15 GEQLILANNCNESVWPGILGNSGHQTPMGGGFHLGRGKHT 55
          G QLI+ NNC ES+WPGILG  G  TP  GGFH+G G+ T
Sbjct: 20 GAQLIIVNNCQESIWPGILGGGGQITPRNGGFHMGSGEET 59

The following BLAST results are available for this feature:

BLAST of Carg12533 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017280.1	4.4e-54	100.00	Thaumatin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022935577.1	2.0e-14	91.11	thaumatin-like protein [Cucurbita moschata]	[more]
XP_023528979.1	2.0e-14	91.11	thaumatin-like protein [Cucurbita pepo subsp. pepo]	[more]
KAG6580530.1	2.0e-14	91.11	Thaumatin-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022983995.1	2.0e-14	91.11	thaumatin-like protein [Cucurbita maxima]	[more]

BLAST of Carg12533 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q53MB8	1.8e-10	67.50	Thaumatin-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0706600 ...	[more]

BLAST of Carg12533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7G6	9.7e-15	91.11	thaumatin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482445 PE=3 SV=1	[more]
A0A6J1F5Y8	9.7e-15	91.11	thaumatin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111442410 PE=3 SV=1	[more]
A0A5D3DN64	1.2e-12	82.22	Thaumatin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3...	[more]
A0A1S3B5E2	1.2e-12	82.22	thaumatin-like protein OS=Cucumis melo OX=3656 GN=LOC103486371 PE=3 SV=1	[more]
A0A6J1CWI2	1.6e-12	87.80	thaumatin-like protein OS=Momordica charantia OX=3673 GN=LOC111015038 PE=3 SV=1	[more]

BLAST of Carg12533 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02140.1	4.2e-10	62.50	Pathogenesis-related thaumatin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037176	Osmotin/thaumatin-like superfamily	GENE3D	2.60.110.10	Thaumatin	coord: 17..73 e-value: 1.3E-5 score: 27.2
IPR037176	Osmotin/thaumatin-like superfamily	SUPERFAMILY	49870	Osmotin, thaumatin-like protein	coord: 18..61
None	No IPR available	PANTHER	PTHR31048:SF45	PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN	coord: 11..55
IPR001938	Thaumatin family	PANTHER	PTHR31048	OS03G0233200 PROTEIN	coord: 11..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12533-RA	Carg12533-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
cellular_component	GO:0016021	integral component of membrane