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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTACCAAAGATTTGAACATTTTTTGCCAAGTTCAGCAGAGCCTGATCAACAGGTTTCTTTGTGACATTACCAGATAATAATGCAATTTTAATTTTGGTCCTGTATATTCTGTAAATGAATATACCATTCCTGTGGTTAGTATTGACCTAATATGGAGCTGATGTGTAAGTGTCTCAGTTACACAAAGACCATGTGTTAAGTTTAAGTTTGAGTTGGTTTTTTGAAAATCCATGCTTGAGTTTGTGTTGGTTATTTACTATTGGATTACACAAGAATTCCATAAACTCTGCTGGATAGCTCGAAAGACAGGAATTCATTCCAATACATACAACAAATTTACTTATCCCATGCTTATATACAAATTACAGATTCATGAGAGCCATGAATCCAACATGAAACATTCAAGTGATCTGGGAACGGAACTAAATTGATTTAAGGTTTCTTATTTACCACATATAACGAATGAACAGGGAAGCTCTATATATGATGGGTGAATTTCAGGTGCCACAAACTCTTACCCATGATCTATGACGGTTGCCGCAGAATCATTGAGACGTATAAAAAAAGCATATGGTTGGATCAGCTTGGAGCTTCTAGCCTCTTAATTCACGACTGAACTCAGAGGGGCTGGTGACAACTCCAAATAATCAAAATCGTCCGTCATACCAACCTGCATTTACACAACCGATAACTCGGAGAGTTCTTAACAAGAGACCTGCAAACGTCCTTTGGAGGTGATAAATGTTTGAAGGTTGAAAGTGGGAAGTAATTACTTTCTTGTCCTTTCAAAACTGTGGAAAGTAATGTTTTATAAAAGGTTGAAGATAAGAAACTTTACGTGCGTCCTATTCTAGCATATTGCTAATTCTTGCAGAGGGCACTTTTTTTGTGCTTTACCTCTTTGTACAGGTTCTCTAGTTCTTTGGCTTGTGGAAAGTTGTTTGAACACCATTATCGCAAAGTGAAAATATTGTCTGCATGTAATCAACAGAGCTTCGAAGGAAATTACAAGTGGGCACGCGAGAAACAAGGGAAACATTGA mRNA sequence ATGTACCAAAGATTTGAACATTTTTTGCCAAGTTCAGCAGAGCCTGATCAACAGCCTCTTAATTCACGACTGAACTCAGAGGGGCTGGTGACAACTCCAAATAATCAAAATCGTCCGTCATACCAACCTGCATTTACACAACCGATAACTCGGAGAGTTCTTAACAAGAGACCTGCAAACGTCCTTTGGAGGTTCTCTAGTTCTTTGGCTTGTGGAAAGTTGTTTGAACACCATTATCGCAAAGTGAAAATATTGTCTGCATGTAATCAACAGAGCTTCGAAGGAAATTACAAGTGGGCACGCGAGAAACAAGGGAAACATTGA Coding sequence (CDS) ATGTACCAAAGATTTGAACATTTTTTGCCAAGTTCAGCAGAGCCTGATCAACAGCCTCTTAATTCACGACTGAACTCAGAGGGGCTGGTGACAACTCCAAATAATCAAAATCGTCCGTCATACCAACCTGCATTTACACAACCGATAACTCGGAGAGTTCTTAACAAGAGACCTGCAAACGTCCTTTGGAGGTTCTCTAGTTCTTTGGCTTGTGGAAAGTTGTTTGAACACCATTATCGCAAAGTGAAAATATTGTCTGCATGTAATCAACAGAGCTTCGAAGGAAATTACAAGTGGGCACGCGAGAAACAAGGGAAACATTGA Protein sequence MYQRFEHFLPSSAEPDQQPLNSRLNSEGLVTTPNNQNRPSYQPAFTQPITRRVLNKRPANVLWRFSSSLACGKLFEHHYRKVKILSACNQQSFEGNYKWAREKQGKH
Homology
BLAST of Carg12259 vs. NCBI nr
Match: KAG7021911.1 (hypothetical protein SDJN02_15639, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 224.6 bits (571), Expect = 4.2e-55 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query: 1 MYQRFEHFLPSSAEPDQQPLNSRLNSEGLVTTPNNQNRPSYQPAFTQPITRRVLNKRPAN 60
MYQRFEHFLPSSAEPDQQPLNSRLNSEGLVTTPNNQNRPSYQPAFTQPITRRVLNKRPAN
Sbjct: 1 MYQRFEHFLPSSAEPDQQPLNSRLNSEGLVTTPNNQNRPSYQPAFTQPITRRVLNKRPAN 60
Query: 61 VLWRFSSSLACGKLFEHHYRKVKILSACNQQSFEGNYKWAREKQGKH 108
VLWRFSSSLACGKLFEHHYRKVKILSACNQQSFEGNYKWAREKQGKH
Sbjct: 61 VLWRFSSSLACGKLFEHHYRKVKILSACNQQSFEGNYKWAREKQGKH 107
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7021911.1 | 4.2e-55 | 100.00 | hypothetical protein SDJN02_15639, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..44 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 14..44 |
Relationships
The following mRNA feature(s) are a part of this gene:
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