Carg12256 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12256
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S30
Location	Carg_Chr11: 2961092 .. 2963642 (+)
RNA-Seq Expression	Carg12256
Synteny	Carg12256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGCGAAACCCTAACTCTTCAGTTCTCGACCTTCGATCTTTTGTAGTGCATTTAGTTTTTTCCGATGCGTCTCGATTCTTTCATCTGTCTGAATCTGTTTGCATATCGTGTTTCTCTGTGGCTTTATTGACTTCCAGGTAAGGTTCACGGATCTTTAGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTTGCGAAGCAGGACAAGAAGAAAAAGCCCCGGGGACGCGCACACAAGCGTATGCAATACAACCGCAGATTCGTCACTGCCGGTAAATCATCTTCGTTTACTTAATTGATCTTTCAGATATATTGGCGCTTTAGTTTAGGATTATTGATTTAGGTTTCGTGGAATAAGCATTGCGATTGGTTTATTTGTTAGAAATTCGAATATATGCAGTTCTGTCTAATTGATATCTTTATTACGAAATTAAGATCCTCGTATGAGGATTTGACAGCCTCATTCTAACGTGTGGTTTATATCTACTTGTATTTGTAGTTGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCCGAGAAGTAAACAAACAGCGATTTCGTTGGGTGCTTTGCCGCTGGAGATGCATGGTTTTATGCGTTATTAATCATTTTCTTTCTTTTTCTAATAGATGTTTTAGTTGTTGAAGCTTTTTTGACCATGTAAAAGATATTTATTTTAGCAATATATTAGAAGCAATGCGATTTGGATCTGAATTTTAGTTGGTTTCGTATTTTCTCTTGCTGATTTTATGATATTTATCTGGATACCTAGAGTTCTCTTAATGCCGCGCTGTTTCTTCATTTGAGTTGTATTTTATATGGCATCGAGAGTGGAGTTGAGTGGGGAGATCTCTCATTAGGATCTTATAAAATCTGCACTGATAGGCTTCATTTACAAAAGCAAGCGTTTCTACGTTGTCTTACATTTGCAACAGGTGGTTCTTAATGATTTGGGTGCTGTAACAAATTAGGTTTCTGGGTCAATTTACATGGAGCTTTCCTGAATCTGGACGAGTTTTTCTCATTAGGTTCCTTTTATCAATTACGAAATTACATGACCCTTCCCAAAATATGATCCAAGTTCTAGGCATCGGAACAGTTCATGTCCATGAAAATGCTGAAAAGATCTTTGTTGTTTGAAAGGCTTGCAGACTTTACTATTATATGCTCTGACGTTAACTAACACGGATCTTAAGCACAAGGATTCGTAGGATCAAATTTCTCTTTACTTTGCATGTAGAACATGAGAGTATTGTGCTTGATTCTTCTAAAGGGCTGAAGATGAAAAGCTGTATAATGAATTGAATGAAGTTCACGATTCCCTTGAAATTTCCGTATCTGTTATAGTTTCACTCATTGTTGGCAAGAGTAGGAGTTCAGTGTGCTTACAGCAGGTGGTTATCATATACCTCTCATGTTTCATGTAAACAATATTTAATTTTGCTATTAAAGGGGAGATTTCTATAATATATAATATTTAATTTTGGATCGGGATCAGCATCTTCACGGGGCCCTCCAATGGAGCCCAATGTTTTTGCTGGCATACACTTTGTGTGGGCTTAGCCTTTTCACTGACACATCGCCTATTATTTGACTCTGATGCCATTTGTAATGGCCAAAGCCTACCGCTAATAGATAGTCTCTTTGGGTTTTTCGGCTTTCCCATCAGATTTTATAAAACGTTTGTTTAGAGAGAAGTTTTCATACTCGTGGATCTCACAAATATGATGTTATATGAGGATTTTGTTTATAGAGAATAGTTGTTCTCCTTCCCAATCAACGTGGATCTCACAAATATGATGTTGAGAATAGTTGTTCTCCTTCCCAATCAACGTGGATCTCACAAATATGATGTTGAGAATAGTTGTTCTCCTTCCCAATCAACGTGGATTTCACAAATATGATGTTATGTTGCAACATGAAAATGTTGCACCACGAAAAGAGACGTGGAAAACTTGAGAGGAGTTCTTTTAGAAGCACTACTTCTTGAGGAATTCTTTTAGAGGGAGGTGGAGGTGGTTTAAATGGTGTTATATATTGAATCCCAAATAAGCAAAATGATCATGGCTCACTCTGGCCAAACTTTAAACAATTAAGCATTGCAAATGGGTTTTTCTAAACACATTCTCAGACGTGATTACAAGTGACTGGTACTTGATCCATATCAGAAACAGAGCCATTACTTGGATGACACTATACAGCTACAGATATTTAAAGCTCATCATGAGAGTATCCTTTAGTTGAAGTAGACTTGGGTGAGTACTCTAGAAGGTACCTTGTGGCGATTGAGGCCTGCAATGCTGCACCATAAGGAATAACATCTTCATTCACTATGTAATAAGGCGAATGTCCCGGTTCGAACTTTCCTACAGTCTCGTTCTTCATCCCAACGAAGTAGAAGAATCCTGGGAATGCTTCACAATAGAATGCAAAGTCTTCTGCTCCCATTAAAGGTTGCATATCAAGGACGTTCTTCGAACCCAACATGTCCCCAGCGACTGCACGAAAATGCTCGTAAAGATCTTGGTCATTCAGTGTAA

mRNA sequence

ATGGGTAAGGTTCACGGATCTTTAGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTTGCGAAGCAGGACAAGAAGAAAAAGCCCCGGGGACGCGCACACAAGCGTATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCCGAGAAGGCTGAAGATGAAAAGCTGTATAATGAATTGAATGAAGTTCACGATTCCCTTGAAATTTCCGTATCTGTTATAGTTTCACTCATTGTTGGCAAGAGTAGGAGTTCAGTGTGCTTACAGCAGGCGAATGTCCCGGTTCGAACTTTCCTACAGTCTCGTTCTTCATCCCAACGAAGTAGAAGAATCCTGGGAATGCTTCACAATAGAATGCAAAGTCTTCTGCTCCCATTAAAGGTTGCATATCAAGGACGTTCTTCGAACCCAACATGTCCCCAGCGACTGCACGAAAATGCTCGTAAAGATCTTGGTCATTCAGTGTAA

Coding sequence (CDS)

ATGGGTAAGGTTCACGGATCTTTAGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTTGCGAAGCAGGACAAGAAGAAAAAGCCCCGGGGACGCGCACACAAGCGTATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCCGAGAAGGCTGAAGATGAAAAGCTGTATAATGAATTGAATGAAGTTCACGATTCCCTTGAAATTTCCGTATCTGTTATAGTTTCACTCATTGTTGGCAAGAGTAGGAGTTCAGTGTGCTTACAGCAGGCGAATGTCCCGGTTCGAACTTTCCTACAGTCTCGTTCTTCATCCCAACGAAGTAGAAGAATCCTGGGAATGCTTCACAATAGAATGCAAAGTCTTCTGCTCCCATTAAAGGTTGCATATCAAGGACGTTCTTCGAACCCAACATGTCCCCAGCGACTGCACGAAAATGCTCGTAAAGATCTTGGTCATTCAGTGTAA

Protein sequence

MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNELNEVHDSLEISVSVIVSLIVGKSRSSVCLQQANVPVRTFLQSRSSSQRSRRILGMLHNRMQSLLLPLKVAYQGRSSNPTCPQRLHENARKDLGHSV

Homology

[Close]

BLAST of Carg12256 vs. NCBI nr
Match: KAG7021908.1 (40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.5 bits (815), Expect = 3.3e-83
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61  EKAEDEKLYNELNEVHDSLEISVSVIVSLIVGKSRSSVCLQQANVPVRTFLQSRSSSQRS 120
           EKAEDEKLYNELNEVHDSLEISVSVIVSLIVGKSRSSVCLQQANVPVRTFLQSRSSSQRS
Sbjct: 61  EKAEDEKLYNELNEVHDSLEISVSVIVSLIVGKSRSSVCLQQANVPVRTFLQSRSSSQRS 120

Query: 121 RRILGMLHNRMQSLLLPLKVAYQGRSSNPTCPQRLHENARKDLGHSV 168
           RRILGMLHNRMQSLLLPLKVAYQGRSSNPTCPQRLHENARKDLGHSV
Sbjct: 121 RRILGMLHNRMQSLLLPLKVAYQGRSSNPTCPQRLHENARKDLGHSV 167

[Close]

BLAST of Carg12256 vs. NCBI nr
Match: KAF1873706.1 (hypothetical protein Lal_00027744 [Lupinus albus])

HSP 1 Score: 127.9 bits (320), Expect = 8.3e-26
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EKAEDEKLYNE 72
          EK E E   NE
Sbjct: 61 EKVEKEDKENE 71

[Close]

BLAST of Carg12256 vs. NCBI nr
Match: QHO19817.1 (40S ribosomal protein [Arachis hypogaea])

HSP 1 Score: 124.4 bits (311), Expect = 9.2e-25
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 36 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95

Query: 61 EKAE 65
          EK E
Sbjct: 96 EKVE 99

[Close]

BLAST of Carg12256 vs. NCBI nr
Match: QHO49491.1 (40S ribosomal protein [Arachis hypogaea])

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-24
Identity = 67/88 (76.14%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 36  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 95

Query: 61  EKAEDEKLYNELNEVHDSLEISVSVIVS 89
           EK  +  +   +   H      + VIVS
Sbjct: 96  EKTSELAIAIAIETSHFLRRAFIVVIVS 123

[Close]

BLAST of Carg12256 vs. NCBI nr
Match: BBG98886.1 (Ribosomal protein S30 family protein [Prunus dulcis])

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-24
Identity = 68/88 (77.27%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK--------AEDEKLYNELNEVHDSLE 81
          EK         E  K +    E  DS+E
Sbjct: 61 EKHGGWNVLGVEKGKSFYTAKEALDSIE 88

[Close]

BLAST of Carg12256 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Carg12256 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Carg12256 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Carg12256 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Carg12256 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of Carg12256 vs. ExPASy TrEMBL
Match: A0A6A5MHQ8 (40S ribosomal protein S30 OS=Lupinus albus OX=3870 GN=Lal_00027744 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.0e-26
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EKAEDEKLYNE 72
          EK E E   NE
Sbjct: 61 EKVEKEDKENE 71

[Close]

BLAST of Carg12256 vs. ExPASy TrEMBL
Match: F6HGX1 (40S ribosomal protein S30 OS=Vitis vinifera OX=29760 GN=VIT_11s0016g02690 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.0e-25
Identity = 65/71 (91.55%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EKAEDEKLYNE 72
          EKA  E    E
Sbjct: 61 EKARRENCKEE 71

[Close]

BLAST of Carg12256 vs. ExPASy TrEMBL
Match: A0A4Y1R4C8 (40S ribosomal protein S30 OS=Prunus dulcis OX=3755 GN=Prudu_008400 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 68/88 (77.27%), Postives = 70/88 (79.55%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK--------AEDEKLYNELNEVHDSLE 81
          EK         E  K +    E  DS+E
Sbjct: 61 EKHGGWNVLGVEKGKSFYTAKEALDSIE 88

[Close]

BLAST of Carg12256 vs. ExPASy TrEMBL
Match: A0A368PSS0 (40S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Carg12256 vs. ExPASy TrEMBL
Match: M5WRX6 (40S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Carg12256 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Carg12256 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]

BLAST of Carg12256 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

The following BLAST results are available for this feature:

BLAST of Carg12256 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021908.1	3.3e-83	100.00	40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAF1873706.1	8.3e-26	92.96	hypothetical protein Lal_00027744 [Lupinus albus]	[more]
QHO19817.1	9.2e-25	98.44	40S ribosomal protein [Arachis hypogaea]	[more]
QHO49491.1	1.6e-24	76.14	40S ribosomal protein [Arachis hypogaea]	[more]
BBG98886.1	2.7e-24	77.27	Ribosomal protein S30 family protein [Prunus dulcis]	[more]

BLAST of Carg12256 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49689	3.9e-26	96.77	40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3	[more]
P62866	1.1e-17	79.31	40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1	[more]
P62860	1.1e-17	79.31	40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1	[more]
P62861	1.1e-17	79.31	40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1	[more]
P62862	1.1e-17	79.31	40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1	[more]

BLAST of Carg12256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5MHQ8	4.0e-26	92.96	40S ribosomal protein S30 OS=Lupinus albus OX=3870 GN=Lal_00027744 PE=3 SV=1	[more]
F6HGX1	2.0e-25	91.55	40S ribosomal protein S30 OS=Vitis vinifera OX=29760 GN=VIT_11s0016g02690 PE=3 S...	[more]
A0A4Y1R4C8	1.3e-24	77.27	40S ribosomal protein S30 OS=Prunus dulcis OX=3755 GN=Prudu_008400 PE=3 SV=1	[more]
A0A368PSS0	1.7e-24	100.00	40S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV...	[more]
M5WRX6	1.7e-24	100.00	40S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1	[more]

BLAST of Carg12256 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19750.1	2.8e-27	96.77	Ribosomal protein S30 family protein	[more]
AT4G29390.1	2.8e-27	96.77	Ribosomal protein S30 family protein	[more]
AT5G56670.1	2.8e-27	96.77	Ribosomal protein S30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006846	Ribosomal protein S30	PFAM	PF04758	Ribosomal_S30	coord: 3..59 e-value: 2.3E-29 score: 101.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..39
None	No IPR available	PANTHER	PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	coord: 1..62
None	No IPR available	PANTHER	PTHR12650:SF28	40S RIBOSOMAL PROTEIN S30	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12256-RA	Carg12256-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome