Carg12254 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg12254
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNudix hydrolase 8-like isoform X2
LocationCarg_Chr11: 2949608 .. 2951033 (+)
RNA-Seq ExpressionCarg12254
SyntenyCarg12254
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGGTAAAACCACGACATGCTTAATAATATGCACTATATTCTCATTCTTTATCTTATGGATGGCGTTGATAAGTGGTCTTAGTGAGGAGATGAACTCGTGTTTATGGATGATTCCTTTTGCCTATAAGGTGTTTGATAAAATGTCTGAATCATTTTTTCAACGTAGTGGTTGCTCTGCCGATGCTACTCTTGCTTTTATTCATATTCTTTTTCTTTGTTTACTTGTGCATCGTCGACTCATTTGAATATTCCAGCATGTTTGAACATATCTATATGGAAAGAAGCTGACTGCAGTTTTGTTTCTTCAGAAGGAAGAAAAATGCGCCTTCCTTTGACAAGATGGTCAAGTTTCCAGGGCTACCCAAAAGGTAGAATTTTTTCCCCTCTTTCAACATGCAAGATTGTTCGAGGATTGTTGGGAGGGAGTCCCACGTTGGCTAATTTAGGAAATGATCACGGGTTTATAAGTAAGTAATACATCTCCATTAGTATGAGACCTTTTTTGGGAAGCCCGAAGCAAAGCCACGAGAGCTTGTGCTCAAAGTGGAGAATATCATACCATTGTGGAGATCTATGATTCTTAATAAAGCTCGCTTGAAATTATAGAGCTCTGTAACTCGTTGACTTTTTGTGGTGGGGTTGGGTTTCAACTTCCATTTAATCACTCCTCTCTTAAAGAATCGAAATGAATTAATTTTTCTTCTTTAATGTGACTTTCCCATTATCCAGATATCTTGAACAAGGATGGTCTACCAGAAACTTCAAGTACTAGAAAACTTATTCTCATCAATGGTAACATTGGACCCAAAAGAACAGCACTTGATGTTTTGTCTCCTGACATTTATACACCAATCGTGGACGTGGAACTTCTAGATCACTGGAATGATGAACACGAAGGGGTCATCATTAATTCAGAGAGCCTACCCTCTTCTGCAAACGCCTTTGCATCAGCTCTCCAGGCATCTCTCTTCCAATGAAGGCTCAAGGTCTGGGAAAAAGTAAAGTTTCCCTTTCTTCTTTATACCACAGTTTTCTTGAGATCTCTGTGCCTAGAACCTTTTTTTTCCTTCCAAATTACAAACAGAGCAAGCTGAACTTGTTTCTGTGGCCATTGATGTGAGATAATAACTGATGTTTTTAGTTCACACTTTCAATCACTGCAAAAGCTGTGGCATCAGATTCTCGAATTTGAACTTCCATAGCCATTATTAGATATTTTAGAGTTGTAACTTTCAGGAGGGGTTCAACTCGCATCATGCTGAAGCAGGATATGTCATGCTCACTTACTGAATTCCTACTTTGTCCTGCATGCTTCCTTCTGGCCCCTCGCATCATATTGGCGTTGTAGCATTCCTCATCAATGACAACGAGGAGGTACCTGTTTTCCACTTTACAACTGCTTTTCTCTCTGTTTAATAGAAT

mRNA sequence

ATGCCAGATATCTTGAACAAGGATGGTCTACCAGAAACTTCAAGTACTAGAAAACTTATTCTCATCAATGGTAACATTGGACCCAAAAGAACAGCACTTGATGTTTTGTCTCCTGACATTTATACACCAATCGTGGACGTGGAACTTCTAGATCACTGGAATGATGAACACGAAGGGAGAGCCTACCCTCTTCTGCAAACGCCTTTGCATCAGCTCTCCAGGCATCTCTCTTCCAATGAAGGCTCAAGGTCTGGGAAAAATTTTCTTGAGATCTCTGTGCCTAGAACCTTTTTTTTCCTTCCAAATTACAAACAGAGCAAGCTGAACTTGTTTCTGTGGCCATTGATGAGGGGTTCAACTCGCATCATGCTGAAGCAGGATATGTCATGCTCACTTACTGAATTCCTACTTTGTCCTGCATGCTTCCTTCTGGCCCCTCGCATCATATTGGCGTTGTAGCATTCCTCATCAATGACAACGAGGAGGTACCTGTTTTCCACTTTACAACTGCTTTTCTCTCTGTTTAATAGAAT

Coding sequence (CDS)

ATGCCAGATATCTTGAACAAGGATGGTCTACCAGAAACTTCAAGTACTAGAAAACTTATTCTCATCAATGGTAACATTGGACCCAAAAGAACAGCACTTGATGTTTTGTCTCCTGACATTTATACACCAATCGTGGACGTGGAACTTCTAGATCACTGGAATGATGAACACGAAGGGAGAGCCTACCCTCTTCTGCAAACGCCTTTGCATCAGCTCTCCAGGCATCTCTCTTCCAATGAAGGCTCAAGGTCTGGGAAAAATTTTCTTGAGATCTCTGTGCCTAGAACCTTTTTTTTCCTTCCAAATTACAAACAGAGCAAGCTGAACTTGTTTCTGTGGCCATTGATGAGGGGTTCAACTCGCATCATGCTGAAGCAGGATATGTCATGCTCACTTACTGAATTCCTACTTTGTCCTGCATGCTTCCTTCTGGCCCCTCGCATCATATTGGCGTTGTAG

Protein sequence

MPDILNKDGLPETSSTRKLILINGNIGPKRTALDVLSPDIYTPIVDVELLDHWNDEHEGRAYPLLQTPLHQLSRHLSSNEGSRSGKNFLEISVPRTFFFLPNYKQSKLNLFLWPLMRGSTRIMLKQDMSCSLTEFLLCPACFLLAPRIILAL
Homology
[Close]
BLAST of Carg12254 vs. NCBI nr
Match: KAG7021906.1 (hypothetical protein SDJN02_15634, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.5 bits (794), Expect = 8.3e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MPDILNKDGLPETSSTRKLILINGNIGPKRTALDVLSPDIYTPIVDVELLDHWNDEHEGR 60
           MPDILNKDGLPETSSTRKLILINGNIGPKRTALDVLSPDIYTPIVDVELLDHWNDEHEGR
Sbjct: 1   MPDILNKDGLPETSSTRKLILINGNIGPKRTALDVLSPDIYTPIVDVELLDHWNDEHEGR 60

Query: 61  AYPLLQTPLHQLSRHLSSNEGSRSGKNFLEISVPRTFFFLPNYKQSKLNLFLWPLMRGST 120
           AYPLLQTPLHQLSRHLSSNEGSRSGKNFLEISVPRTFFFLPNYKQSKLNLFLWPLMRGST
Sbjct: 61  AYPLLQTPLHQLSRHLSSNEGSRSGKNFLEISVPRTFFFLPNYKQSKLNLFLWPLMRGST 120

Query: 121 RIMLKQDMSCSLTEFLLCPACFLLAPRIILAL 153
           RIMLKQDMSCSLTEFLLCPACFLLAPRIILAL
Sbjct: 121 RIMLKQDMSCSLTEFLLCPACFLLAPRIILAL 152

[Close]
BLAST of Carg12254 vs. NCBI nr
Match: KAG6588012.1 (hypothetical protein SDJN03_16577, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-18
Identity = 60/93 (64.52%), Postives = 60/93 (64.52%), Query Frame = 0 

Query: 60  RAYPLLQTPLHQLSRHLSSNEGSRSGKNFLEISVPRTFFFLPNYKQSKLNLFLWPLMRGS 119
           RAYPLLQTPLHQLSRHLSSNEGSR                                 RGS
Sbjct: 32  RAYPLLQTPLHQLSRHLSSNEGSR---------------------------------RGS 91

Query: 120 TRIMLKQDMSCSLTEFLLCPACFLLAPRIILAL 153
           TRIMLKQDMSCSLTEFLLCPACFLLAPRIILAL
Sbjct: 92  TRIMLKQDMSCSLTEFLLCPACFLLAPRIILAL 91

[Close]
BLAST of Carg12254 vs. NCBI nr
Match: XP_022145002.1 (nudix hydrolase 8-like [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-15
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 4  ILNKDGLPETSSTRKLILINGNIGPKRTALDVLSPDIYTPIVDVELLDHWNDEHEG 60
          ++ KDGLPETSSTRKLI +NGNIGPKR+ALDVLSPDI TP + VELLDH NDE+EG
Sbjct: 38 VVYKDGLPETSSTRKLIPVNGNIGPKRSALDVLSPDISTPNMAVELLDHLNDEYEG 93

[Close]
BLAST of Carg12254 vs. NCBI nr
Match: TYK10134.1 (nudix hydrolase 8-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-07
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 5   LNKDGLPETSSTRKLILINGNIGPKRTALDVLSPDIYTPIVDVELLDHWNDEHEGRAYPL 64
           +++ G  +     KLI ING I  KR ALDV   DI TP + +ELLDHWNDE+EG     
Sbjct: 61  VSRGGQKKLRVLEKLIPINGKIELKRAALDVFFSDISTPNMAMELLDHWNDEYEGIIINS 120

Query: 65  LQTPLHQLSRHLSSNEGSRSGK 87
              P    S+HLSSN  S   K
Sbjct: 121 ESLP----SKHLSSNRDSSGEK 138

[Close]
BLAST of Carg12254 vs. ExPASy TrEMBL
Match: A0A6J1CVA2 (nudix hydrolase 8-like OS=Momordica charantia OX=3673 GN=LOC111014531 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0 

Query: 4  ILNKDGLPETSSTRKLILINGNIGPKRTALDVLSPDIYTPIVDVELLDHWNDEHEG 60
          ++ KDGLPETSSTRKLI +NGNIGPKR+ALDVLSPDI TP + VELLDH NDE+EG
Sbjct: 38 VVYKDGLPETSSTRKLIPVNGNIGPKRSALDVLSPDISTPNMAVELLDHLNDEYEG 93

[Close]
BLAST of Carg12254 vs. ExPASy TrEMBL
Match: A0A5D3CG04 (Nudix hydrolase 8-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002770 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 5   LNKDGLPETSSTRKLILINGNIGPKRTALDVLSPDIYTPIVDVELLDHWNDEHEGRAYPL 64
           +++ G  +     KLI ING I  KR ALDV   DI TP + +ELLDHWNDE+EG     
Sbjct: 61  VSRGGQKKLRVLEKLIPINGKIELKRAALDVFFSDISTPNMAMELLDHWNDEYEGIIINS 120

Query: 65  LQTPLHQLSRHLSSNEGSRSGK 87
              P    S+HLSSN  S   K
Sbjct: 121 ESLP----SKHLSSNRDSSGEK 138

The following BLAST results are available for this feature:
BLAST of Carg12254 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021906.18.3e-81100.00hypothetical protein SDJN02_15634, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6588012.11.5e-1864.52hypothetical protein SDJN03_16577, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022145002.13.5e-1578.57nudix hydrolase 8-like [Momordica charantia][more]
TYK10134.14.6e-0746.34nudix hydrolase 8-like isoform X2 [Cucumis melo var. makuwa][more]
BLAST of Carg12254 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg12254 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CVA21.7e-1578.57nudix hydrolase 8-like OS=Momordica charantia OX=3673 GN=LOC111014531 PE=3 SV=1[more]
A0A5D3CG042.2e-0746.34Nudix hydrolase 8-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Carg12254 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12254-RACarg12254-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity