Carg12247 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12247
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Programmed cell death protein 4-like
Location	Carg_Chr11: 2915513 .. 2915743 (-)
RNA-Seq Expression	Carg12247
Synteny	Carg12247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGCCAGAGAAGAGCCTGAAGCCAAGCGGAAAATCCGATGTGCGGAAGGATCGGAAATCGGCGACGGGGATGAGCGGATCGCCGAAGAAAGGAGGCCATGGCGGCAAGTTTACTTGGGCGGGAGATGGTTACTCGCCGGCCGAGATCAGCTTCAGGGCTGAAGATATGGACGTGAAGGACCCTAACTTCGAAGATCCGGAAGAGGCGGTGGCGGTGGCGGTTTAA

mRNA sequence

ATGAAGAAGCCAGAGAAGAGCCTGAAGCCAAGCGGAAAATCCGATGTGCGGAAGGATCGGAAATCGGCGACGGGGATGAGCGGATCGCCGAAGAAAGGAGGCCATGGCGGCAAGTTTACTTGGGCGGGAGATGGTTACTCGCCGGCCGAGATCAGCTTCAGGGCTGAAGATATGGACGTGAAGGACCCTAACTTCGAAGATCCGGAAGAGGCGGTGGCGGTGGCGGTTTAA

Coding sequence (CDS)

ATGAAGAAGCCAGAGAAGAGCCTGAAGCCAAGCGGAAAATCCGATGTGCGGAAGGATCGGAAATCGGCGACGGGGATGAGCGGATCGCCGAAGAAAGGAGGCCATGGCGGCAAGTTTACTTGGGCGGGAGATGGTTACTCGCCGGCCGAGATCAGCTTCAGGGCTGAAGATATGGACGTGAAGGACCCTAACTTCGAAGATCCGGAAGAGGCGGTGGCGGTGGCGGTTTAA

Protein sequence

MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDVKDPNFEDPEEAVAVAV

Homology

[Close]

BLAST of Carg12247 vs. NCBI nr
Match: KAG6588005.1 (hypothetical protein SDJN03_16570, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021899.1 hypothetical protein SDJN02_15627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV
Sbjct: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60

Query: 61 KDPNFEDPEEAVAVAV 77
          KDPNFEDPEEAVAVAV
Sbjct: 61 KDPNFEDPEEAVAVAV 76

[Close]

BLAST of Carg12247 vs. NCBI nr
Match: TYK10141.1 (programmed cell death protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MKK EKS KP+GKS+VRKDRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEI F+AE MDV
Sbjct: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDPEEAVAVAV 77
          KDPNFED EEAVAVAV
Sbjct: 61 KDPNFEDLEEAVAVAV 76

[Close]

BLAST of Carg12247 vs. NCBI nr
Match: XP_022730195.1 (programmed cell death protein 4-like [Durio zibethinus])

HSP 1 Score: 107.1 bits (266), Expect = 6.9e-20
Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MK   KS K +GKSDVRKDRKS TGMSGSPKKGGHGGKFTWAGDG SPAEI    E +DV
Sbjct: 1  MKNTGKSNKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKFTWAGDGLSPAEIGVEKEVVDV 60

Query: 61 KDPNFEDPEEAV 73
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]

BLAST of Carg12247 vs. NCBI nr
Match: EOY30624.1 (Uncharacterized protein TCM_037765 [Theobroma cacao])

HSP 1 Score: 106.7 bits (265), Expect = 9.1e-20
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MK   KS K +GKSDVRKDRKS TGMSGSPKKGGHGGK+TW GDG SPAEI F  E +DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDPEEAV 73
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]

BLAST of Carg12247 vs. NCBI nr
Match: XP_021668209.1 (programmed cell death protein 4-like [Hevea brasiliensis])

HSP 1 Score: 104.4 bits (259), Expect = 4.5e-19
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1   MKKPEKSLK--PSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDM 60
           MK   KS K   + KSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYS AEI  + E +
Sbjct: 91  MKNTVKSSKTNANSKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSQAEIGLQGEAV 150

Query: 61  DVKDPNFEDPEEAVAV 75
           DVKDPNFEDPEE   V
Sbjct: 151 DVKDPNFEDPEETETV 166

[Close]

BLAST of Carg12247 vs. ExPASy TrEMBL
Match: A0A5D3CE82 (Programmed cell death protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002840 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MKK EKS KP+GKS+VRKDRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEI F+AE MDV
Sbjct: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDPEEAVAVAV 77
          KDPNFED EEAVAVAV
Sbjct: 61 KDPNFEDLEEAVAVAV 76

[Close]

BLAST of Carg12247 vs. ExPASy TrEMBL
Match: A0A0A0LWP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575040 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.0e-26
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MKK EKS KPSGKS+VRKDRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEI F+AE MDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDPEEAVAVAV 77
          KDPNFED EEA  VAV
Sbjct: 61 KDPNFEDLEEAETVAV 76

[Close]

BLAST of Carg12247 vs. ExPASy TrEMBL
Match: A0A803NU54 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MK   K  K +GKS+V+KDRKS TG++GSPKKGGHGGKFTWAGDGYSP+E+ F+ E MDV
Sbjct: 1  MKSAGKGSKGNGKSEVKKDRKSGTGINGSPKKGGHGGKFTWAGDGYSPSEMGFQKEVMDV 60

Query: 61 KDPNFEDPEEAVAV 75
          KDPNFEDPEE V V
Sbjct: 61 KDPNFEDPEEEVIV 74

[Close]

BLAST of Carg12247 vs. ExPASy TrEMBL
Match: A0A6P5XPU9 (programmed cell death protein 4-like OS=Durio zibethinus OX=66656 GN=LOC111285167 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MK   KS K +GKSDVRKDRKS TGMSGSPKKGGHGGKFTWAGDG SPAEI    E +DV
Sbjct: 1  MKNTGKSNKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKFTWAGDGLSPAEIGVEKEVVDV 60

Query: 61 KDPNFEDPEEAV 73
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]

BLAST of Carg12247 vs. ExPASy TrEMBL
Match: A0A061GU30 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037765 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60
          MK   KS K +GKSDVRKDRKS TGMSGSPKKGGHGGK+TW GDG SPAEI F  E +DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDPEEAV 73
          KDPNFEDP+E V
Sbjct: 61 KDPNFEDPDEIV 72

The following BLAST results are available for this feature:

BLAST of Carg12247 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588005.1	1.6e-32	100.00	hypothetical protein SDJN03_16570, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK10141.1	2.2e-26	86.84	programmed cell death protein 4-like [Cucumis melo var. makuwa]	[more]
XP_022730195.1	6.9e-20	77.78	programmed cell death protein 4-like [Durio zibethinus]	[more]
EOY30624.1	9.1e-20	76.39	Uncharacterized protein TCM_037765 [Theobroma cacao]	[more]
XP_021668209.1	4.5e-19	75.00	programmed cell death protein 4-like [Hevea brasiliensis]	[more]

BLAST of Carg12247 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CE82	1.1e-26	86.84	Programmed cell death protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0LWP4	7.0e-26	85.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575040 PE=4 SV=1	[more]
A0A803NU54	1.5e-20	72.97	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6P5XPU9	3.4e-20	77.78	programmed cell death protein 4-like OS=Durio zibethinus OX=66656 GN=LOC11128516...	[more]
A0A061GU30	4.4e-20	76.39	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037765 PE=4 SV=1	[more]

BLAST of Carg12247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12247-RA	Carg12247-RA	mRNA