Carg12188 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12188
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LEA_2 domain-containing protein
Location	Carg_Chr11: 2619370 .. 2621192 (-)
RNA-Seq Expression	Carg12188
Synteny	Carg12188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCCAGCTCCAGGGACGATTCTGTCTCTCTCCTCCCCCAAAATGCCGGACACGGACACCAAAACCTCGTCCTATTGTCCCTTTACCGGCCCCCTCCATACCCACATCGACGCCTTCTCCGCCTCTGTGCCCAATACTCCGCCGCCTTCCTCCTCCTCGCCGCTCTAGCTTTTCTACTCTTCCCCTCCGATCCCTCGCTCCAACTCGTCCGATTGAAACTCAACCACGCCAAAGTCCGTTTGTTGCCGGTTCTCGTCCTTGACCTTTCCATCTCTGCTTCTATTAGGGTTCGCAATAAGAACTTCTTCTCTCTCGATTACAATTACCTTGGCGTTTCCGTTGGCTACAGAGGAAGACGACTTGGATTTGTCAGCTCCGACGGCGGTCGAGTTTCCGCTCGAGGGTCTTCTTATGTGAATGCCACTGTGGATTTGAATGGAGTTGAGGTCATTCACGATGCCTTTTACTTGCTTCAGGATTTGGGGAAAGGTATCATTCCATTCGATTCAAAGACGGAAGTCGAAGGATTCATGGGGTTTTTCTTTATCAAATTCCCCATTAAGGTAATCTTGATTTACATTCTGTTTCTAACATTACATCAAAACTTTACTCGGATTATGCACCGTTGATTCGTTCTTAACTCTTAAGCAAAGTATAGTCAATGATCGAAATCATCATCGTCATCATACATTATAGCTTTTGTTTATTTGATTGCAATCATTTTCAATCTCTACGCTTCAAGATTTAAATGATGTATACAGTTTTGGCAACTATTACACCTCTCTTAGTGTAGAAGTTCAGATAGTTGGAAAAGGACAAACTTTGTGGGTGACCCATTGAATGTTTAGAACCCATTTCTTGATCCTGCAAAGATAGGTGAAATTTAGAGTACAAAAATAGGCGTAATTTTCAAAACAATGCTATCAAGTTTGATACTTGCTACTGTTGATTCTGGGGAAATGGTTGAAGAAGATATACCTTCTTCTGGATTTGAACAATGCTGTTCCACTCTCGCAATGAATATGATTATAATGTCTGCTTCCTCATTCCCACCCCACCCTCCTACCGTGTTACAACTGCCTATCTCAAGGCTTTAAAACAACTTTGGCAGAGAGAGGTTTCCACGCCGTTGAAACGAATGATTCGTTTCTCTCTCTAATGAATGGGGATCTCACAATCCACCTCTTTGCACCAGGTCCCTGACTTTGATTCCATTTGTAGCCGCTCAAACTCACTACTAGCACATATTGTCGTCTTTGAGCTATACGTAACATTGTTTGTAAGGGTGTGGAAACCTCTCCCTTCTAAATACGTTTTAAAATCGTGAGACTGACGTCGATATGTAATAGATTAAAATGGACAATATTTGTTAGCGGTGGCCTTTAGATGTTAAAACCTCTTTCACCAACTCTGACTATTCAGCTTAAATACTTGTAATGTGTATGAGTGCTCTGTTTGTTGTTTCAATGGTGTTCTTCATTATTACTTATCAGGCAAGGGTATCATGTGATGTATTTGTGGATACGAAAAGGCAAACAATTGAACATCAAGATTGCTACCCAGAGGTACAAAAACTCATCATTTTGCTTACTTTTCTGTTCATATTTCTGCAAAATCTCAATGGGATTTTTTGTTTCTTATATTTGCAGTGAAGGGAATGATAGAACTCCCCAAATCCTCTGCTGAATTTGTTTAATTCTATCAACTTAGGATCCACAAAAAGAAAATGTTTAATTCTTTGTGGATTAGTGCTGTTTAGTTTAAGCTTTCATGTGTCATCATCTTGATTTTATGAAAATAAATTCTATTTCTATGTACT

mRNA sequence

ATGACTTCCAGCTCCAGGGACGATTCTGTCTCTCTCCTCCCCCAAAATGCCGGACACGGACACCAAAACCTCGTCCTATTGTCCCTTTACCGGCCCCCTCCATACCCACATCGACGCCTTCTCCGCCTCTGTGCCCAATACTCCGCCGCCTTCCTCCTCCTCGCCGCTCTAGCTTTTCTACTCTTCCCCTCCGATCCCTCGCTCCAACTCGTCCGATTGAAACTCAACCACGCCAAAGTCCGTTTGTTGCCGGTTCTCGTCCTTGACCTTTCCATCTCTGCTTCTATTAGGGTTCGCAATAAGAACTTCTTCTCTCTCGATTACAATTACCTTGGCGTTTCCGTTGGCTACAGAGGAAGACGACTTGGATTTGTCAGCTCCGACGGCGGTCGAGTTTCCGCTCGAGGGTCTTCTTATGTGAATGCCACTGTGGATTTGAATGGAGTTGAGGTCATTCACGATGCCTTTTACTTGCTTCAGGATTTGGGGAAAGGTATCATTCCATTCGATTCAAAGACGGAAGTCGAAGGATTCATGGGGTTTTTCTTTATCAAATTCCCCATTAAGGCAAGGGTATCATGTGATGTATTTGTGGATACGAAAAGGCAAACAATTGAACATCAAGATTGCTACCCAGAGTGAAGGGAATGATAGAACTCCCCAAATCCTCTGCTGAATTTGTTTAATTCTATCAACTTAGGATCCACAAAAAGAAAATGTTTAATTCTTTGTGGATTAGTGCTGTTTAGTTTAAGCTTTCATGTGTCATCATCTTGATTTTATGAAAATAAATTCTATTTCTATGTACT

Coding sequence (CDS)

ATGACTTCCAGCTCCAGGGACGATTCTGTCTCTCTCCTCCCCCAAAATGCCGGACACGGACACCAAAACCTCGTCCTATTGTCCCTTTACCGGCCCCCTCCATACCCACATCGACGCCTTCTCCGCCTCTGTGCCCAATACTCCGCCGCCTTCCTCCTCCTCGCCGCTCTAGCTTTTCTACTCTTCCCCTCCGATCCCTCGCTCCAACTCGTCCGATTGAAACTCAACCACGCCAAAGTCCGTTTGTTGCCGGTTCTCGTCCTTGACCTTTCCATCTCTGCTTCTATTAGGGTTCGCAATAAGAACTTCTTCTCTCTCGATTACAATTACCTTGGCGTTTCCGTTGGCTACAGAGGAAGACGACTTGGATTTGTCAGCTCCGACGGCGGTCGAGTTTCCGCTCGAGGGTCTTCTTATGTGAATGCCACTGTGGATTTGAATGGAGTTGAGGTCATTCACGATGCCTTTTACTTGCTTCAGGATTTGGGGAAAGGTATCATTCCATTCGATTCAAAGACGGAAGTCGAAGGATTCATGGGGTTTTTCTTTATCAAATTCCCCATTAAGGCAAGGGTATCATGTGATGTATTTGTGGATACGAAAAGGCAAACAATTGAACATCAAGATTGCTACCCAGAGTGA

Protein sequence

MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFLLFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGRRLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMGFFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE

Homology

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BLAST of Carg12188 vs. NCBI nr
Match: KAG7021841.1 (hypothetical protein SDJN02_15569, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 419.9 bits (1078), Expect = 1.4e-113
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL 60
           MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL
Sbjct: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL 60

Query: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR 120
           LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR
Sbjct: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR 120

Query: 121 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180
           RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG
Sbjct: 121 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180

Query: 181 FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 214
           FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE
Sbjct: 181 FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 213

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BLAST of Carg12188 vs. NCBI nr
Match: KAG6587951.1 (hypothetical protein SDJN03_16516, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 417.2 bits (1071), Expect = 8.8e-113
Identity = 212/213 (99.53%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL 60
           MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL
Sbjct: 81  MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL 140

Query: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR 120
           LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYL VSVGYRGR
Sbjct: 141 LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLDVSVGYRGR 200

Query: 121 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180
           RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG
Sbjct: 201 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 260

Query: 181 FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 214
           FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE
Sbjct: 261 FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 293

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BLAST of Carg12188 vs. NCBI nr
Match: XP_023530779.1 (uncharacterized protein LOC111793228 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415.2 bits (1066), Expect = 3.3e-112
Identity = 209/213 (98.12%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL 60
           MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAAL+FL
Sbjct: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALSFL 60

Query: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR 120
           LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISAS+RVRNKNFFSLDYNYLGVSVGYRG+
Sbjct: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASVRVRNKNFFSLDYNYLGVSVGYRGK 120

Query: 121 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180
           RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG
Sbjct: 121 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180

Query: 181 FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 214
           FFFIKFPIKARVSCDVFV+TKRQTIEHQDCYPE
Sbjct: 181 FFFIKFPIKARVSCDVFVNTKRQTIEHQDCYPE 213

[Close]

BLAST of Carg12188 vs. NCBI nr
Match: XP_023530780.1 (uncharacterized protein LOC111793228 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415.2 bits (1066), Expect = 3.3e-112
Identity = 209/213 (98.12%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL 60
           MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAAL+FL
Sbjct: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALSFL 60

Query: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR 120
           LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISAS+RVRNKNFFSLDYNYLGVSVGYRG+
Sbjct: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASVRVRNKNFFSLDYNYLGVSVGYRGK 120

Query: 121 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180
           RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG
Sbjct: 121 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180

Query: 181 FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 214
           FFFIKFPIKARVSCDVFV+TKRQTIEHQDCYPE
Sbjct: 181 FFFIKFPIKARVSCDVFVNTKRQTIEHQDCYPE 213

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BLAST of Carg12188 vs. NCBI nr
Match: XP_023004127.1 (uncharacterized protein LOC111497551 [Cucurbita maxima])

HSP 1 Score: 410.6 bits (1054), Expect = 8.2e-111
Identity = 208/213 (97.65%), Postives = 211/213 (99.06%), Query Frame = 0


Query: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL 60
           MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAAL+FL
Sbjct: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALSFL 60

Query: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR 120
           LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISAS+RVRNKNFFSLDYNYLGVSVGYRG 
Sbjct: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASVRVRNKNFFSLDYNYLGVSVGYRGS 120

Query: 121 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180
           RLGFVSSDGGRVSARGSS VNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG
Sbjct: 121 RLGFVSSDGGRVSARGSSCVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180

Query: 181 FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 214
           FFFIKFPIKARVSCDVFV+TKRQTIEHQDCYPE
Sbjct: 181 FFFIKFPIKARVSCDVFVNTKRQTIEHQDCYPE 213

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BLAST of Carg12188 vs. ExPASy TrEMBL
Match: A0A6J1KPJ6 (uncharacterized protein LOC111497551 OS=Cucurbita maxima OX=3661 GN=LOC111497551 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.0e-111
Identity = 208/213 (97.65%), Postives = 211/213 (99.06%), Query Frame = 0


Query: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL 60
           MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAAL+FL
Sbjct: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALSFL 60

Query: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR 120
           LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISAS+RVRNKNFFSLDYNYLGVSVGYRG 
Sbjct: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASVRVRNKNFFSLDYNYLGVSVGYRGS 120

Query: 121 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180
           RLGFVSSDGGRVSARGSS VNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG
Sbjct: 121 RLGFVSSDGGRVSARGSSCVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180

Query: 181 FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 214
           FFFIKFPIKARVSCDVFV+TKRQTIEHQDCYPE
Sbjct: 181 FFFIKFPIKARVSCDVFVNTKRQTIEHQDCYPE 213

[Close]

BLAST of Carg12188 vs. ExPASy TrEMBL
Match: A0A6J1EZ17 (uncharacterized protein LOC111437732 OS=Cucurbita moschata OX=3662 GN=LOC111437732 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.0e-111
Identity = 208/213 (97.65%), Postives = 211/213 (99.06%), Query Frame = 0


Query: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFL 60
           MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAAL+FL
Sbjct: 1   MTSSSRDDSVSLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALSFL 60

Query: 61  LFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR 120
           LFPSDPSLQLVRL+LNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR
Sbjct: 61  LFPSDPSLQLVRLRLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGR 120

Query: 121 RLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180
            LGFVSSDGGRVSARG SYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG
Sbjct: 121 LLGFVSSDGGRVSARGFSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMG 180

Query: 181 FFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 214
           FFFIKFPIKARVSCDVFV+TKRQTIEHQDCYPE
Sbjct: 181 FFFIKFPIKARVSCDVFVNTKRQTIEHQDCYPE 213

[Close]

BLAST of Carg12188 vs. ExPASy TrEMBL
Match: A0A6J1CTN0 (uncharacterized protein LOC111014473 OS=Momordica charantia OX=3673 GN=LOC111014473 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.1e-88
Identity = 173/217 (79.72%), Postives = 192/217 (88.48%), Query Frame = 0


Query: 1   MTSSSRDDSV----SLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAA 60
           MTSSSRDDSV    SLLP NA   HQN+V+LSLYRPP +  RRLLRLCA YSAAFLLL+A
Sbjct: 1   MTSSSRDDSVPVPYSLLPPNA--AHQNVVVLSLYRPPRFRRRRLLRLCAFYSAAFLLLSA 60

Query: 61  LAFLLFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVG 120
           +AFLLFP+DPSLQLVRLKLN  KVRLLPVL+LDLS SAS+RVRN NFFSLDYNYLGVSVG
Sbjct: 61  VAFLLFPADPSLQLVRLKLNRLKVRLLPVLLLDLSFSASVRVRNNNFFSLDYNYLGVSVG 120

Query: 121 YRGRRLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVE 180
           YRGRRLGFVSS+GGRVSARG SYVNAT+DLNG EVIHD  YL++DL  GI+PFD++TEVE
Sbjct: 121 YRGRRLGFVSSEGGRVSARGLSYVNATLDLNGFEVIHDGIYLIEDLATGIVPFDTETEVE 180

Query: 181 GFMGFFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 214
           G+MG FFIKFPIKARVSC+VFV+T  +TIEHQDCYPE
Sbjct: 181 GYMGLFFIKFPIKARVSCEVFVNTNDKTIEHQDCYPE 215

[Close]

BLAST of Carg12188 vs. ExPASy TrEMBL
Match: A0A0A0LTV4 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G369500 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.9e-85
Identity = 168/217 (77.42%), Postives = 188/217 (86.64%), Query Frame = 0


Query: 1   MTSSSRDDSV----SLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAA 60
           MTSSS DDSV    +L+P NA    QN+V+LSLYRPPP  HRRLLRLCA YSAAFLLL A
Sbjct: 1   MTSSSGDDSVPVPYTLIPSNA--AQQNVVVLSLYRPPPCRHRRLLRLCAFYSAAFLLLFA 60

Query: 61  LAFLLFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVG 120
           +AFLLFPSDPSLQLVRLKLN  KV L+PV+ LDLS S S+RVRNKNFFSL+YN+LGVSVG
Sbjct: 61  VAFLLFPSDPSLQLVRLKLNRVKVHLVPVVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVG 120

Query: 121 YRGRRLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVE 180
           YRGRRLG+VSS+GGRVSARGSSYVNAT+DLNG+EV+HD  YLL DLGKGIIPFD++T+VE
Sbjct: 121 YRGRRLGYVSSEGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETDVE 180

Query: 181 GFMGFFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 214
           G MG FFIK PIKARVSC+V V+T  QTIEHQDCYPE
Sbjct: 181 GSMGLFFIKIPIKARVSCEVLVNTNNQTIEHQDCYPE 215

[Close]

BLAST of Carg12188 vs. ExPASy TrEMBL
Match: A0A6J1JI07 (uncharacterized protein LOC111485280 OS=Cucurbita maxima OX=3661 GN=LOC111485280 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.9e-85
Identity = 168/215 (78.14%), Postives = 187/215 (86.98%), Query Frame = 0


Query: 3   SSSRDDSV----SLLPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALA 62
           S S+D S+    S +P NA    QN+V+LSLYRPP Y  RRLLRLCA YSAAFLLL+A+ 
Sbjct: 2   SCSKDGSIPVPYSPIPPNAA-APQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAVV 61

Query: 63  FLLFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYR 122
           FLLFPSDPSLQLVRLKLN  KVRLLP +VLDLS SAS+RVRNKNFFSLDYNYLGVSVG+R
Sbjct: 62  FLLFPSDPSLQLVRLKLNGVKVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGFR 121

Query: 123 GRRLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGF 182
           GRRLGFVSSDGGRVSARGSSYVNAT+DLNG+++IHD F+LL+DL KGIIPFD++TEVEG 
Sbjct: 122 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 181

Query: 183 MGFFFIKFPIKARVSCDVFVDTKRQTIEHQDCYPE 214
           MG FFIKFPIKA VSC+VFVDT  QTIEHQDCYPE
Sbjct: 182 MGLFFIKFPIKATVSCEVFVDTNSQTIEHQDCYPE 215

[Close]

BLAST of Carg12188 vs. TAIR 10
Match: AT4G13270.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 188.0 bits (476), Expect = 8.1e-48
Identity = 98/213 (46.01%), Postives = 140/213 (65.73%), Query Frame = 0


Query: 1   MTSSSRDD-SVSLLPQNAGHGHQNLVLLSLYRPPPYPH-RRLLRLCAQYSAAFLLLAALA 60
           M SS  +D  +   P  +    Q+++LL+ YR    P   R LR    ++A  LLL+A  
Sbjct: 1   MASSKHEDYGIPYTPLPSSQPSQSVILLTPYRRHRRPSLLRNLRCSLLFTAVILLLSAAV 60

Query: 61  FLLFPSDPSLQLVRLKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYR 120
           +LL+PSDP + + R+ LNH  V     + LDLS S +I+VRN++FFSLDY+ L VS+GYR
Sbjct: 61  YLLYPSDPDITVSRINLNHISVVDSHKIALDLSFSLTIKVRNRDFFSLDYDSLVVSIGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGF 180
           GR LG V S GG + AR SSY++AT++L+G+EV+HD  YL+ DL KG+IPFD+  +V+G 
Sbjct: 121 GRELGLVKSKGGHLKARDSSYIDATLELDGLEVVHDVIYLIGDLAKGVIPFDTIAQVQGD 180

Query: 181 MGFFFIKFPIKARVSCDVFVDTKRQTIEHQDCY 212
           +G      PI+ +VSC+V+V+   Q I HQDC+
Sbjct: 181 LGVLLFNIPIQGKVSCEVYVNVNNQKISHQDCH 213

[Close]

BLAST of Carg12188 vs. TAIR 10
Match: AT1G52330.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-39
Identity = 78/200 (39.00%), Postives = 126/200 (63.00%), Query Frame = 0


Query: 13  LPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFLLFPSDPSLQLVR 72
           LP ++ H   + VL+S +  PP   R ++ +     A+ L+     ++ +PSDP ++++R
Sbjct: 19  LPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFASILI-----YIFWPSDPRIKIIR 78

Query: 73  LKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGRRLGFVSSDGGRV 132
           +K++H  V   PV  +D+++  +++V N + +S D+  L V++ YRG+ LG VSSDGG V
Sbjct: 79  VKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHV 138

Query: 133 SARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMGFFFIKFPIKARV 192
           +A GSSY++A  +L+GV V  D  +L+ DL KG + FD+ TE  G +G  F +FP+KA+V
Sbjct: 139 TAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLKAKV 198

Query: 193 SCDVFVDTKRQTIEHQDCYP 213
           +C + VDT  QTI  Q C P
Sbjct: 199 ACGILVDTVNQTISRQSCSP 213

[Close]

BLAST of Carg12188 vs. TAIR 10
Match: AT1G52330.2 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-31
Identity = 67/179 (37.43%), Postives = 112/179 (62.57%), Query Frame = 0


Query: 13  LPQNAGHGHQNLVLLSLYRPPPYPHRRLLRLCAQYSAAFLLLAALAFLLFPSDPSLQLVR 72
           LP ++ H   + VL+S +  PP   R ++ +     A+ L+     ++ +PSDP ++++R
Sbjct: 19  LPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFASILI-----YIFWPSDPRIKIIR 78

Query: 73  LKLNHAKVRLLPVLVLDLSISASIRVRNKNFFSLDYNYLGVSVGYRGRRLGFVSSDGGRV 132
           +K++H  V   PV  +D+++  +++V N + +S D+  L V++ YRG+ LG VSSDGG V
Sbjct: 79  VKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGGHV 138

Query: 133 SARGSSYVNATVDLNGVEVIHDAFYLLQDLGKGIIPFDSKTEVEGFMGFFFIKFPIKAR 192
           +A GSSY++A  +L+GV V  D  +L+ DL KG + FD+ TE  G +G  F +FP+K R
Sbjct: 139 TAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLKVR 192

The following BLAST results are available for this feature:

BLAST of Carg12188 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021841.1	1.4e-113	100.00	hypothetical protein SDJN02_15569, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587951.1	8.8e-113	99.53	hypothetical protein SDJN03_16516, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023530779.1	3.3e-112	98.12	uncharacterized protein LOC111793228 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023530780.1	3.3e-112	98.12	uncharacterized protein LOC111793228 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023004127.1	8.2e-111	97.65	uncharacterized protein LOC111497551 [Cucurbita maxima]	[more]

BLAST of Carg12188 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KPJ6	4.0e-111	97.65	uncharacterized protein LOC111497551 OS=Cucurbita maxima OX=3661 GN=LOC111497551...	[more]
A0A6J1EZ17	4.0e-111	97.65	uncharacterized protein LOC111437732 OS=Cucurbita moschata OX=3662 GN=LOC1114377...	[more]
A0A6J1CTN0	2.1e-88	79.72	uncharacterized protein LOC111014473 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0LTV4	2.9e-85	77.42	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G369500 PE=4 ...	[more]
A0A6J1JI07	4.9e-85	78.14	uncharacterized protein LOC111485280 OS=Cucurbita maxima OX=3661 GN=LOC111485280...	[more]

BLAST of Carg12188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13270.1	8.1e-48	46.01	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.1	6.8e-39	39.00	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.2	2.4e-31	37.43	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.40.1820		coord: 66..197 e-value: 2.8E-5 score: 25.9
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 8..213
None	No IPR available	PANTHER	PTHR31852:SF119	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 8..213
None	No IPR available	SUPERFAMILY	117070	LEA14-like	coord: 54..177
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 96..190 e-value: 1.1E-10 score: 41.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12188-RA	Carg12188-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane