Carg12186 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12186
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 2617465 .. 2619099 (-)
RNA-Seq Expression	Carg12186
Synteny	Carg12186

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCTTACGACTTCAAAATGGACGGATTTCGTCCTTATGGACATACACAAACATTCGGGCGATTCATTTGGCCGACAGAGACCAGAACCACAATTGTATTCATAGAAAAACATTCACTTTCCAAGACATCATTGTTCCACACGAGTTGTCTTCATCCGCCCCACCCAAACGTACTCACTTCGATGCAGCCTGCAACGAAACGACCCCGGATGCCCCGTCGGCGAGCACAAGCACCGCACCTTCGCCGACCCACCGCCATTGCTGCTACTCCCAGCCGCTGATGCTGCCTGCAAGAGGACCCAATTGCTTTGCACACCCAAAAGCTCCCTCCGGCTTACCAGCCAAGGCCGTAAATCATGTGGGTAACACATTTTTTCTTCTTTTCTTCTGTCCCTTTTAATCTTGGTTTTGGTATTTGGTTTATGATGGATTGTCTTGCTGGGAGTGAAGAGAAAAAGAATATGTGGAATTGGAGTTTTTATATAAGAGAAAAAATTAAAAACAAAGGCATGAAAGCTTATAGATAATATCATACTATTTTGTAGAGTCGTGGTTCCTAACAATTACTTAGGAGTGCTATATTATTCATCGCCCTTTGCTTGAATGATGGGCCAAAGTTCACCATCAATAACAGAAGAATCTAATTCTTCCTCCTACATGAAAAGAAAAGGTTTTTTTTTCCTCAACTTTTTCTTTCCCTTCTTTCATGCAATGCAAAAGGAATCATTGGAGAATAAAGAGATAAAAGTATAACATAATTGAGTGTGGGAGTACCAAAGCTTGCCACTTCATGGGTTCCATGGCAAACCCAAAGCTCTATTCTAGTATCTAAGTTGGGCGTGGAATTGTAGAGTGGGGTTTTCCCGGTCATTGCTGAGTGGTTTCCTACTCACATTCTTTAACCAAATGTGTGGTTTATTGTTTTCGTGGTTTGTTGTTTTGCATGAAACAAATGTGTTGTCGGAATCTTGAATTCATCCACAAACAAACACTCCACTTTATTAGCATCACTTTATTCAGGATTTCTCGTCTTCATTTGAATGAAACAACCCTCCATTCCTCATTTTCATTTCTTAAACATGTCAAATAAGAAGTAAGATTAGATGATGTTGGTAATTAATTAATTAATTAAGCCATCATTAAAGTTTGACCGATTGGATATAAGAATAATTGAAAATTTTGGTGTCACATGGAAGATGGTTGATAATTCAAGAAATCCCCACCCTCCCATTCACATGTGGATGCATTGCAGCATATGGAAATGGATCCACAAAATCCGGACTTCATTTTAACTTATAACTCCGTTCGTATACCAAACTCAAATCATCTGGCAGCTTTGATGATGGGAAAGAAGAGCAGCAAACAAACCATCAGATTGGGGCGATGGAGAAGCGGGTACCAACCCAATCTGTGGAAGCTGTTATGGAGGAAACTGAGAAGACAAAAGAGGAACAAAACCACGACGTATTCCTCAGGGAACTTGATTCCTTATGATCCTTTCTCTTATTCACACAATTTCGACCAAGGCAACGCTGCCGAAGATCCCGATATTCTTTGCCGCTCCTTCTCCGCCCGCTTTGCCCTCGCCGATGCTGCTTCCGCCTTCTTTCTTGACAACCAGCTTCAATAA

mRNA sequence

ATGGAGAGCTTACGACTTCAAAATGGACGGATTTCGTCCTTATGGACATACACAAACATTCGGGCGATTCATTTGGCCGACAGAGACCAGAACCACAATTGTATTCATAGAAAAACATTCACTTTCCAAGACATCATTGTTCCACACGAGTTGTCTTCATCCGCCCCACCCAAACGTACTCACTTCGATGCAGCCTGCAACGAAACGACCCCGGATGCCCCGTCGGCGAGCACAAGCACCGCACCTTCGCCGACCCACCGCCATTGCTGCTACTCCCAGCCGCTGATGCTGCCTGCAAGAGGACCCAATTGCTTTGCACACCCAAAAGCTCCCTCCGGCTTACCAGCCAAGGCCGTAAATCATCATATGGAAATGGATCCACAAAATCCGGACTTCATTTTAACTTATAACTCCGTTCGTATACCAAACTCAAATCATCTGGCAGCTTTGATGATGGGAAAGAAGAGCAGCAAACAAACCATCAGATTGGGGCGATGGAGAAGCGGGTACCAACCCAATCTGTGGAAGCTGTTATGGAGGAAACTGAGAAGACAAAAGAGGAACAAAACCACGACGTATTCCTCAGGGAACTTGATTCCTTATGATCCTTTCTCTTATTCACACAATTTCGACCAAGGCAACGCTGCCGAAGATCCCGATATTCTTTGCCGCTCCTTCTCCGCCCGCTTTGCCCTCGCCGATGCTGCTTCCGCCTTCTTTCTTGACAACCAGCTTCAATAA

Coding sequence (CDS)

ATGGAGAGCTTACGACTTCAAAATGGACGGATTTCGTCCTTATGGACATACACAAACATTCGGGCGATTCATTTGGCCGACAGAGACCAGAACCACAATTGTATTCATAGAAAAACATTCACTTTCCAAGACATCATTGTTCCACACGAGTTGTCTTCATCCGCCCCACCCAAACGTACTCACTTCGATGCAGCCTGCAACGAAACGACCCCGGATGCCCCGTCGGCGAGCACAAGCACCGCACCTTCGCCGACCCACCGCCATTGCTGCTACTCCCAGCCGCTGATGCTGCCTGCAAGAGGACCCAATTGCTTTGCACACCCAAAAGCTCCCTCCGGCTTACCAGCCAAGGCCGTAAATCATCATATGGAAATGGATCCACAAAATCCGGACTTCATTTTAACTTATAACTCCGTTCGTATACCAAACTCAAATCATCTGGCAGCTTTGATGATGGGAAAGAAGAGCAGCAAACAAACCATCAGATTGGGGCGATGGAGAAGCGGGTACCAACCCAATCTGTGGAAGCTGTTATGGAGGAAACTGAGAAGACAAAAGAGGAACAAAACCACGACGTATTCCTCAGGGAACTTGATTCCTTATGATCCTTTCTCTTATTCACACAATTTCGACCAAGGCAACGCTGCCGAAGATCCCGATATTCTTTGCCGCTCCTTCTCCGCCCGCTTTGCCCTCGCCGATGCTGCTTCCGCCTTCTTTCTTGACAACCAGCTTCAATAA

Protein sequence

MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRTHFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVNHHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKLLWRKLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSFSARFALADAASAFFLDNQLQ

Homology

[Close]

BLAST of Carg12186 vs. NCBI nr
Match: KAG7021839.1 (hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 510.4 bits (1313), Expect = 8.8e-141
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60
           MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT
Sbjct: 1   MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60

Query: 61  HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN 120
           HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN
Sbjct: 61  HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN 120

Query: 121 HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKLLWR 180
           HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKLLWR
Sbjct: 121 HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKLLWR 180

Query: 181 KLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSFSARFALADAASAFF 240
           KLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSFSARFALADAASAFF
Sbjct: 181 KLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSFSARFALADAASAFF 240

Query: 241 LDNQLQ 247
           LDNQLQ
Sbjct: 241 LDNQLQ 246

[Close]

BLAST of Carg12186 vs. NCBI nr
Match: KAG6587950.1 (hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 505.4 bits (1300), Expect = 2.8e-139
Identity = 242/246 (98.37%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60
           MESLRLQNGRISSLWTYTNIR+IHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT
Sbjct: 1   MESLRLQNGRISSLWTYTNIRSIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60

Query: 61  HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN 120
           HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN
Sbjct: 61  HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN 120

Query: 121 HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKLLWR 180
           HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWK+LWR
Sbjct: 121 HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKVLWR 180

Query: 181 KLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSFSARFALADAASAFF 240
           KLRR+KRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAE+PDILCRSFSARFALADAASAFF
Sbjct: 181 KLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSFSARFALADAASAFF 240

Query: 241 LDNQLQ 247
           LDNQLQ
Sbjct: 241 LDNQLQ 246

[Close]

BLAST of Carg12186 vs. NCBI nr
Match: KAE8653121.1 (hypothetical protein Csa_019717, partial [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-22
Identity = 65/100 (65.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 154 KKSSKQTIRLGRWR--SGYQPNLWKLLWRKLRRQKR------NKTTTYSSG-NLIPYDPF 213
           +K  + TIRLG WR  +  QPN+WK+LWRKLRR+KR      N TT YSSG  LIPYDPF
Sbjct: 10  RKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPF 69

Query: 214 SYSHNFDQGNAAEDPDILCRSFSARFALADAASAFFLDNQ 245
           SYS NFDQG A E+ D L RSFSARFALAD ASA FL  Q
Sbjct: 70  SYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQ 109

[Close]

BLAST of Carg12186 vs. NCBI nr
Match: EXB74486.1 (hypothetical protein L484_026180 [Morus notabilis])

HSP 1 Score: 69.7 bits (169), Expect = 4.0e-08
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 167 RSGYQPNLWKLLWRKLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSF 226
           ++G +  +WK+LW K++++KR    + S    +PYDP++YS NFDQG+AA DP+ L RSF
Sbjct: 28  KAGSKMPVWKVLWTKIKKEKRRFFDSSSDPAHVPYDPYTYSQNFDQGSAA-DPENLSRSF 87

Query: 227 SARFAL 233
           SARFA+
Sbjct: 88  SARFAV 92

[Close]

BLAST of Carg12186 vs. NCBI nr
Match: PON35164.1 (hypothetical protein TorRG33x02_352000 [Trema orientale])

HSP 1 Score: 69.7 bits (169), Expect = 4.0e-08
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 175 WKLLWRKLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSFSARFAL 233
           WK+LW K+ ++KR      SS   +PYDP++YS NFDQG+AA DPD L RSFSARFA+
Sbjct: 37  WKMLWTKIMKEKRKFFDCSSSSVHVPYDPYTYSQNFDQGSAA-DPDNLSRSFSARFAV 93

[Close]

BLAST of Carg12186 vs. ExPASy TrEMBL
Match: A0A0A0LWX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-22
Identity = 65/100 (65.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 154 KKSSKQTIRLGRWR--SGYQPNLWKLLWRKLRRQKR------NKTTTYSSG-NLIPYDPF 213
           +K  + TIRLG WR  +  QPN+WK+LWRKLRR+KR      N TT YSSG  LIPYDPF
Sbjct: 5   RKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPF 64

Query: 214 SYSHNFDQGNAAEDPDILCRSFSARFALADAASAFFLDNQ 245
           SYS NFDQG A E+ D L RSFSARFALAD ASA FL  Q
Sbjct: 65  SYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQ 104

[Close]

BLAST of Carg12186 vs. ExPASy TrEMBL
Match: W9R638 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026180 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-08
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 167 RSGYQPNLWKLLWRKLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSF 226
           ++G +  +WK+LW K++++KR    + S    +PYDP++YS NFDQG+AA DP+ L RSF
Sbjct: 28  KAGSKMPVWKVLWTKIKKEKRRFFDSSSDPAHVPYDPYTYSQNFDQGSAA-DPENLSRSF 87

Query: 227 SARFAL 233
           SARFA+
Sbjct: 88  SARFAV 92

[Close]

BLAST of Carg12186 vs. ExPASy TrEMBL
Match: A0A2P5AF49 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_352000 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-08
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 175 WKLLWRKLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSFSARFAL 233
           WK+LW K+ ++KR      SS   +PYDP++YS NFDQG+AA DPD L RSFSARFA+
Sbjct: 37  WKMLWTKIMKEKRKFFDCSSSSVHVPYDPYTYSQNFDQGSAA-DPDNLSRSFSARFAV 93

[Close]

BLAST of Carg12186 vs. ExPASy TrEMBL
Match: A0A218WZT1 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015002 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 175 WKLLWRKLRRQKRNKTTTYSSGNL-IPYDPFSYSHNFDQGNAAEDPDILCRSFSARFAL 233
           W++LWRK++ + + +T  +SS +  + YDPF+Y+ NFDQG    DPDIL RSFSARFA+
Sbjct: 43  WRVLWRKIKGKMKKRTPRWSSASFRVAYDPFTYAQNFDQGCTLADPDILSRSFSARFAV 101

[Close]

BLAST of Carg12186 vs. ExPASy TrEMBL
Match: A0A2I0IWT9 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_031807 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 175 WKLLWRKLRRQKRNKTTTYSSGNL-IPYDPFSYSHNFDQGNAAEDPDILCRSFSARFAL 233
           W++LWRK++ + + +T  +SS +  + YDPF+Y+ NFDQG    DPDIL RSFSARFA+
Sbjct: 43  WRVLWRKIKGKMKKRTPRWSSASFRVAYDPFTYAQNFDQGCTLADPDILSRSFSARFAV 101

The following BLAST results are available for this feature:

BLAST of Carg12186 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021839.1	8.8e-141	100.00	hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587950.1	2.8e-139	98.37	hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653121.1	2.8e-22	65.00	hypothetical protein Csa_019717, partial [Cucumis sativus]	[more]
EXB74486.1	4.0e-08	50.00	hypothetical protein L484_026180 [Morus notabilis]	[more]
PON35164.1	4.0e-08	58.62	hypothetical protein TorRG33x02_352000 [Trema orientale]	[more]

BLAST of Carg12186 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX3	1.4e-22	65.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1	[more]
W9R638	1.9e-08	50.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026180 PE=4 SV=1	[more]
A0A2P5AF49	1.9e-08	58.62	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_352000 PE=4 SV...	[more]
A0A218WZT1	2.5e-08	52.54	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015002 PE=4 SV=1	[more]
A0A2I0IWT9	2.5e-08	52.54	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_031807 PE=4 SV=1	[more]

BLAST of Carg12186 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..84
None	No IPR available	PANTHER	PTHR33168:SF44	EXPRESSED PROTEIN	coord: 153..242
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 153..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12186-RA	Carg12186-RA	mRNA