Carg12159 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12159
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribonucloprotein
Location	Carg_Chr11: 2498769 .. 2500832 (+)
RNA-Seq Expression	Carg12159
Synteny	Carg12159

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGAGAACCCTAGATCTCTGTTGCCGTTCTTAAACCCTAATTCCTAAGCCTCTCCGTCTCCTCCAAAGATCTCGGAAACCTGCGTCTCTGCTTGCTTATTCTTCGCACGAACAATGGTACCCTCTCTTTCTCTCTTCCTCTCTGTCTGTTTCATATCTGAATGATTGTATGTTTATTTGATTGCTATCGACTGATTGTGAACTTCTTGTAAACTGGCAGACTGCAGAGAAAGTAAATCCCAAGGCGTACCCTTTGGCCGACGCACAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTGCTAACTACAAGCAAATCAAGAAGGGCGCCAATGAAGGTAGCCTCTCTTCTTGTACCTTTGTCTGCACCATCTACTGTTACGAAATACACGGATGAGCTTTAGTTCATTTTCGTATTTCAGTGAATGATTCTTTGTTTTGTGACTTTTTCAGCAACCAAGACGCTGAACAGAGGTATATCTGAGTTCGTTGTGATGGCCTCTGATACCGAGCCGCTTGAAATCCTCCTTCATCTTCCGCTATTAGCCGAGGATAAGGTACTCTTCAATCCTTAACAGTTGTGCGGAGAAGATTTTGTGTCTGATTGGTATCTTTATGCTTCCTTTTATTTATTGGTGTTCATTTGGCTGTTTGATGTATCTTGTGGGGTTTGAGGCTACATGTACCAAGAGAAGGGTGTGAAAAATTGTTAATACCCATGTTTCTTGACCTGCCAAAGTGGCTGTAGCTAAATCAAATGCGTGAAGTTAACTGGCCGGCTGTTGTTCTCTATCAACGAATCTGCTTACCGAACTTCCTACATTCTTATACCTTTCCTTCAAAATCTGTTTAGTTAACTTTTCCACTTCAAATGACTACTTTATCATTGCAAGAAGGGGGAAGGGTGAAATGGCATAGGGTTTAGCTTTTCTATGAGACCCTTCTCTCACATCAAAATTTCTTTCACGTTCCAGGCAAGCTGCATTATCGTTTTTCAGCAGTTTGCATCTATTGATAGATCAGTAGATCGACTGACTCCAACTGTGTTCAACAACCCTCTTATGGTCAATCTAATTGACATACCCCAATAATCTTCTCTAGGACTCTTTGGAAGCTTCGTAGTGGTGCTCATTTTTTGGCAGCTTCTATTTCTGGATACTTATATATAGACGAGAAACACAATTTCCCATTCCGTTTCTATTTGAAATGTTATTCATTCGAAGAACTACTACCACCAAAAGCCATTGACTGCCTCCAGTATGGTTTCCTGCCAGCAGACTGGCTTTTGAACATTGCTTCAGAATGCTACTAAAAGTATAAAAAACAGAACTTTGTCAAAATTTGATTATTGTATGTTTCCATTCAACGTTTTAATGTCTGGTCATGGTAACGATGGAAATAGGATAATATTTGATTTTGCAGAATGTGCCCTACGTGTTTGTCCCGTCTAAGCAAGCACTTGGCCGAGCTTGTGGAGTTACAAGACCTGTTATAGCTTGTTCTGTGACGACAAATGAAGGAAGCCAATTGAAGTCGCAAATACAGCAACTGAAGGTAATTATTCAATATCTGACTGTAAATATCTCCCATCATTTCTAAATGTCCTCCCTGATGAATTGTTCTGACCATTCTTTTTTATATATAGGATGCCATTGAAAAGCTCCTGATTTGAAGATATAGTCAATTGTGTGTTTTCGGTGTGATGGGCTTCTTGTTTCTCGGTGGTCGCTCCATTGGGGCTCTAACTGATGTGGGTTGTGCAAGTGGAGGAATATGTTTCAATTGTAACAACCACTAAAATTTTCCTTCCCAAGAGATACGATATTTATTGAGAAATGATAATGGTCATTCTTATGTTTGCCATATCTTGATGTTAGTTACTTGTCTGGTAGTCATATTTCCATTCAGTAAGATTTTTGTTAGATCTCTGACATTAAATGTTTGACCAATATGAATTTAGTAGAATTTCTTGAAGTATTTTGAACCATGAAGATGTGATTGTGTTGTCTTACTTTAGTGGCTGCAATCCCAGCACATCTTATTTTCTTAATGAAAAATGT

mRNA sequence

AACAGAGAACCCTAGATCTCTGTTGCCGTTCTTAAACCCTAATTCCTAAGCCTCTCCGTCTCCTCCAAAGATCTCGGAAACCTGCGTCTCTGCTTGCTTATTCTTCGCACGAACAATGACTGCAGAGAAAGTAAATCCCAAGGCGTACCCTTTGGCCGACGCACAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTGCTAACTACAAGCAAATCAAGAAGGGCGCCAATGAAGCAACCAAGACGCTGAACAGAGGTATATCTGAGTTCGTTGTGATGGCCTCTGATACCGAGCCGCTTGAAATCCTCCTTCATCTTCCGCTATTAGCCGAGGATAAGAATGTGCCCTACGTGTTTGTCCCGTCTAAGCAAGCACTTGGCCGAGCTTGTGGAGTTACAAGACCTGTTATAGCTTGTTCTGTGACGACAAATGAAGGAAGCCAATTGAAGTCGCAAATACAGCAACTGAAGGATGCCATTGAAAAGCTCCTGATTTGAAGATATAGTCAATTGTGTGTTTTCGGTGTGATGGGCTTCTTGTTTCTCGGTGGTCGCTCCATTGGGGCTCTAACTGATGTGGGTTGTGCAAGTGGAGGAATATGTTTCAATTGTAACAACCACTAAAATTTTCCTTCCCAAGAGATACGATATTTATTGAGAAATGATAATGGTCATTCTTATGTTTGCCATATCTTGATGTTAGTTACTTGTCTGGTAGTCATATTTCCATTCAGTAAGATTTTTGTTAGATCTCTGACATTAAATGTTTGACCAATATGAATTTAGTAGAATTTCTTGAAGTATTTTGAACCATGAAGATGTGATTGTGTTGTCTTACTTTAGTGGCTGCAATCCCAGCACATCTTATTTTCTTAATGAAAAATGT

Coding sequence (CDS)

ATGACTGCAGAGAAAGTAAATCCCAAGGCGTACCCTTTGGCCGACGCACAACTTACAATCACCATTCTTGATCTTGTTCAACAAGCTGCTAACTACAAGCAAATCAAGAAGGGCGCCAATGAAGCAACCAAGACGCTGAACAGAGGTATATCTGAGTTCGTTGTGATGGCCTCTGATACCGAGCCGCTTGAAATCCTCCTTCATCTTCCGCTATTAGCCGAGGATAAGAATGTGCCCTACGTGTTTGTCCCGTCTAAGCAAGCACTTGGCCGAGCTTGTGGAGTTACAAGACCTGTTATAGCTTGTTCTGTGACGACAAATGAAGGAAGCCAATTGAAGTCGCAAATACAGCAACTGAAGGATGCCATTGAAAAGCTCCTGATTTGA

Protein sequence

MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

Homology

[Close]

BLAST of Carg12159 vs. NCBI nr
Match: KAG6587925.1 (NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.7 bits (631), Expect = 5.5e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT
Sbjct: 103 MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 162

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 163 EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 222

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 223 DAIEKLLI 230

[Close]

BLAST of Carg12159 vs. NCBI nr
Match: XP_022925662.1 (NHP2-like protein 1 [Cucurbita moschata] >KAG7021813.1 NHP2-like protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.7 bits (631), Expect = 5.5e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. NCBI nr
Match: XP_022144838.1 (NHP2-like protein 1 isoform X2 [Momordica charantia] >XP_022961071.1 NHP2-like protein 1 [Cucurbita moschata] >XP_023001012.1 NHP2-like protein 1 [Cucurbita maxima] >XP_023516369.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023529528.1 NHP2-like protein 1 [Cucurbita pepo subsp. pepo] >KAG7023526.1 NHP2-like protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. NCBI nr
Match: KAG6589855.1 (NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DT
Sbjct: 802 MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 861

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 862 EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 921

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 922 DAIEKLLI 929

[Close]

BLAST of Carg12159 vs. NCBI nr
Match: XP_022987905.1 (NHP2-like protein 1 [Cucurbita maxima])

HSP 1 Score: 245.4 bits (625), Expect = 2.7e-61
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLL+EDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLSEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. ExPASy Swiss-Prot
Match: Q5XH16 (NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.9e-53
Identity = 103/128 (80.47%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MT  +VNPKAYPLADAQLT T+LDLVQQ+ANYKQ++KGANEATKTLNRGI+EF+VMA+D 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQ 120

Query: 121 DAIEKLLI 129
            AIE+LL+
Sbjct: 121 QAIERLLV 128

[Close]

BLAST of Carg12159 vs. ExPASy Swiss-Prot
Match: Q6P8E9 (NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.9e-53
Identity = 103/128 (80.47%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MT  +VNPKAYPLADAQLT T+LDLVQQAANYKQ++KGANEATKTLNRGI+EF+VMA+D 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  EGSQLK QIQ L+
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Carg12159 vs. ExPASy Swiss-Prot
Match: Q3B8S0 (NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3)

HSP 1 Score: 202.6 bits (514), Expect = 2.7e-51
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMA+D 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Carg12159 vs. ExPASy Swiss-Prot
Match: P55769 (NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3)

HSP 1 Score: 202.6 bits (514), Expect = 2.7e-51
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMA+D 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Carg12159 vs. ExPASy Swiss-Prot
Match: Q4R5C6 (NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.7e-51
Identity = 100/128 (78.12%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMA+D 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIACSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Carg12159 vs. ExPASy TrEMBL
Match: A0A6J1ECA3 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111433008 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.7e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. ExPASy TrEMBL
Match: A0A6J1KF93 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111495275 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. ExPASy TrEMBL
Match: A0A6J1CUC5 (Ribonucloprotein OS=Momordica charantia OX=3673 GN=LOC111014423 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. ExPASy TrEMBL
Match: A0A6J1H9B8 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111461690 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. ExPASy TrEMBL
Match: A0A6J1JI38 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111485307 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-61
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DT
Sbjct: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLL+EDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLSEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-60
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEFVVMA+D 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 228.8 bits (582), Expect = 2.5e-60
Identity = 116/128 (90.62%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MT E VNPKAYPLAD+QL+ITI+DLVQQA NYKQ+KKGANEATKTLNRGISEFVVMA+D 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 228.4 bits (581), Expect = 3.2e-60
Identity = 116/128 (90.62%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEF+VMA+DT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Carg12159 vs. TAIR 10
Match: AT5G20160.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-55
Identity = 117/160 (73.12%), Postives = 122/160 (76.25%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANE------------------- 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANE                   
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMF 60

Query: 61  -------------ATKTLNRGISEFVVMASDTEPLEILLHLPLLAEDKNVPYVFVPSKQA 120
                        ATKTLNRGISEFVVMA+D EPLEILLHLPLLAEDKNVPYVFVPSKQA
Sbjct: 61  VKLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 120

Query: 121 LGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 129
           LGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 121 LGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 160

[Close]

BLAST of Carg12159 vs. TAIR 10
Match: AT4G12600.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-52
Identity = 116/183 (63.39%), Postives = 122/183 (66.67%), Query Frame = 0


Query: 1   MTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMASDT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEF+VMA+DT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDK-------------------------------------------- 120
           EPLEILLHLPLLAEDK                                            
Sbjct: 61  EPLEILLHLPLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWL 120

Query: 121 -----------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEK 129
                      NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LKDAIEK
Sbjct: 121 LDSSFEIVIVDNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEK 180

The following BLAST results are available for this feature:

BLAST of Carg12159 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587925.1	5.5e-62	100.00	NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022925662.1	5.5e-62	100.00	NHP2-like protein 1 [Cucurbita moschata] >KAG7021813.1 NHP2-like protein 1 [Cucu...	[more]
XP_022144838.1	1.2e-61	99.22	NHP2-like protein 1 isoform X2 [Momordica charantia] >XP_022961071.1 NHP2-like p...	[more]
KAG6589855.1	1.2e-61	99.22	NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022987905.1	2.7e-61	98.44	NHP2-like protein 1 [Cucurbita maxima]	[more]

BLAST of Carg12159 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XH16	4.9e-53	80.47	NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1	[more]
Q6P8E9	4.9e-53	80.47	NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1	[more]
Q3B8S0	2.7e-51	78.13	NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3	[more]
P55769	2.7e-51	78.13	NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3	[more]
Q4R5C6	2.7e-51	78.13	NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1	[more]

BLAST of Carg12159 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ECA3	2.7e-62	100.00	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111433008 PE=3 SV=1	[more]
A0A6J1KF93	6.0e-62	99.22	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111495275 PE=3 SV=1	[more]
A0A6J1CUC5	6.0e-62	99.22	Ribonucloprotein OS=Momordica charantia OX=3673 GN=LOC111014423 PE=3 SV=1	[more]
A0A6J1H9B8	6.0e-62	99.22	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111461690 PE=3 SV=1	[more]
A0A6J1JI38	1.3e-61	98.44	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111485307 PE=3 SV=1	[more]

BLAST of Carg12159 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20160.1	1.5e-60	91.41	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	2.5e-60	90.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	3.2e-60	90.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.2	1.4e-55	73.13	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.2	1.5e-52	63.39	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..128
None	No IPR available	PANTHER	PTHR23105:SF158	NHP2-LIKE PROTEIN 1	coord: 4..128
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 4..128
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 38..48 score: 87.27 coord: 21..36 score: 60.0 coord: 82..94 score: 83.08 coord: 8..21 score: 62.86
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 70..80 score: 59.09 coord: 35..49 score: 46.06 coord: 54..67 score: 47.73 coord: 80..94 score: 51.21
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 23..111 e-value: 1.6E-26 score: 91.9
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..128 e-value: 1.8E-57 score: 194.5
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 5..126
IPR004037	Ribosomal protein L7Ae conserved site	PROSITE	PS01082	RIBOSOMAL_L7AE	coord: 73..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12159-RA	Carg12159-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031428	box C/D RNP complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding