Carg12149 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12149
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Amino-acid racemase isoform 2
Location	Carg_Chr11: 2466248 .. 2467324 (-)
RNA-Seq Expression	Carg12149
Synteny	Carg12149

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGATGGAGGGATGGCTGTGCCCTTTTATGCACTGAATTGCCCCGCACCTGTTCGACGAAATGCTAACGAAAGCATTACTCGCTTTAGAAGGAGATTAAACCCGTATTCATCTCTACAGATTTTCTCTGTTGTTCAAACGGATGAGAATGATAACTTACCAGTGTCCAAGAAGATATCAACTCCAGGAAAGTCTGTGTCAAAAGGTCGAGCTCCTAAGCCGCTTCTTGTCCAGCCAAATACCGTGGGTGTCATAGGAGGAGTATCGGTTATTTCTACTCTACTTTTCTTGGAAAAGCTCGTGTGGTGGAGCTTGAAGGATGGACAACAGAGCATACCATTTGTTGTCTGCAGCGATCCAGCATTAGGCAAAGGGATCCCCCCTCTCACTTCATTGACTACATTCACCGAAAATTCTTCTCAACATGCTCAGATTGATGCTCCCATCATCGAGATTTTGAAGCAAAAATGCGTGTTTCTCGAGCAATCTGGAGCTCGGTGCCTAATTACACCTTGCCATCTTTCACATAGGTGGCTTGGTGACACAAGTTGTAAATTACCTTTCCTTCATGTGGGAGATTGTGTTGCTATGGAGCTTAAAGAGGCTAAGCTTAAGCCACTTGAAGCAGGGAGCAGTGTCCGGATTGGGCTGCTTGCGACTGATGCAGCTATAGTGACTGGTTTTTACCGTGAGAGACTACAAAATCAGGTTTTGTTAAATACATTCAGATCTATTTAGTAAATGATTCCAGAATTTGGTTCTGATTTCATTTTGTTTCTTCAGGGCTTTGAGGTTGTCTTGCCAGACGACGCAACCATAAAGCATATTTTAGTTCCTGCAGTTGAAGCTTTGAACAAAAGGGATCAGGAAGGAGCAAGAAATCTGTTGAGGATTGCTGTTCATATTCTTTTGATAAGGGCTGTGAATATAGTAATACTTGCTTCTGATGAATTCCTTAATCTTCTTCCTCCAGATGATCCTATTCTGAAGAAATGTATTGACCCCATGGATGCGTTGGCCAGAGCAGCCATTAAATGGTCTAGATCTACAGGAAACTTACATGAGAAAGCTTAG

mRNA sequence

ATGCTTGATGGAGGGATGGCTGTGCCCTTTTATGCACTGAATTGCCCCGCACCTGTTCGACGAAATGCTAACGAAAGCATTACTCGCTTTAGAAGGAGATTAAACCCGTATTCATCTCTACAGATTTTCTCTGTTGTTCAAACGGATGAGAATGATAACTTACCAGTGTCCAAGAAGATATCAACTCCAGGAAAGTCTGTGTCAAAAGGTCGAGCTCCTAAGCCGCTTCTTGTCCAGCCAAATACCGTGGGTGTCATAGGAGGAGTATCGGTTATTTCTACTCTACTTTTCTTGGAAAAGCTCGTGTGGTGGAGCTTGAAGGATGGACAACAGAGCATACCATTTGTTGTCTGCAGCGATCCAGCATTAGGCAAAGGGATCCCCCCTCTCACTTCATTGACTACATTCACCGAAAATTCTTCTCAACATGCTCAGATTGATGCTCCCATCATCGAGATTTTGAAGCAAAAATGCGTGTTTCTCGAGCAATCTGGAGCTCGGTGCCTAATTACACCTTGCCATCTTTCACATAGGTGGCTTGGTGACACAAGTTGTAAATTACCTTTCCTTCATGTGGGAGATTGTGTTGCTATGGAGCTTAAAGAGGCTAAGCTTAAGCCACTTGAAGCAGGGAGCAGTGTCCGGATTGGGCTGCTTGCGACTGATGCAGCTATAGTGACTGGTTTTTACCGTGAGAGACTACAAAATCAGGGCTTTGAGGTTGTCTTGCCAGACGACGCAACCATAAAGCATATTTTAGTTCCTGCAGTTGAAGCTTTGAACAAAAGGGATCAGGAAGGAGCAAGAAATCTGTTGAGGATTGCTGTTCATATTCTTTTGATAAGGGCTGTGAATATAGTAATACTTGCTTCTGATGAATTCCTTAATCTTCTTCCTCCAGATGATCCTATTCTGAAGAAATGTATTGACCCCATGGATGCGTTGGCCAGAGCAGCCATTAAATGGTCTAGATCTACAGGAAACTTACATGAGAAAGCTTAG

Coding sequence (CDS)

ATGCTTGATGGAGGGATGGCTGTGCCCTTTTATGCACTGAATTGCCCCGCACCTGTTCGACGAAATGCTAACGAAAGCATTACTCGCTTTAGAAGGAGATTAAACCCGTATTCATCTCTACAGATTTTCTCTGTTGTTCAAACGGATGAGAATGATAACTTACCAGTGTCCAAGAAGATATCAACTCCAGGAAAGTCTGTGTCAAAAGGTCGAGCTCCTAAGCCGCTTCTTGTCCAGCCAAATACCGTGGGTGTCATAGGAGGAGTATCGGTTATTTCTACTCTACTTTTCTTGGAAAAGCTCGTGTGGTGGAGCTTGAAGGATGGACAACAGAGCATACCATTTGTTGTCTGCAGCGATCCAGCATTAGGCAAAGGGATCCCCCCTCTCACTTCATTGACTACATTCACCGAAAATTCTTCTCAACATGCTCAGATTGATGCTCCCATCATCGAGATTTTGAAGCAAAAATGCGTGTTTCTCGAGCAATCTGGAGCTCGGTGCCTAATTACACCTTGCCATCTTTCACATAGGTGGCTTGGTGACACAAGTTGTAAATTACCTTTCCTTCATGTGGGAGATTGTGTTGCTATGGAGCTTAAAGAGGCTAAGCTTAAGCCACTTGAAGCAGGGAGCAGTGTCCGGATTGGGCTGCTTGCGACTGATGCAGCTATAGTGACTGGTTTTTACCGTGAGAGACTACAAAATCAGGGCTTTGAGGTTGTCTTGCCAGACGACGCAACCATAAAGCATATTTTAGTTCCTGCAGTTGAAGCTTTGAACAAAAGGGATCAGGAAGGAGCAAGAAATCTGTTGAGGATTGCTGTTCATATTCTTTTGATAAGGGCTGTGAATATAGTAATACTTGCTTCTGATGAATTCCTTAATCTTCTTCCTCCAGATGATCCTATTCTGAAGAAATGTATTGACCCCATGGATGCGTTGGCCAGAGCAGCCATTAAATGGTCTAGATCTACAGGAAACTTACATGAGAAAGCTTAG

Protein sequence

MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKISTPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSDPALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWLGDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFEVVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPPDDPILKKCIDPMDALARAAIKWSRSTGNLHEKA

Homology

[Close]

BLAST of Carg12149 vs. NCBI nr
Match: KAG7021803.1 (hypothetical protein SDJN02_15531, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 666.4 bits (1718), Expect = 1.3e-187
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0


Query: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
           GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300
           VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP
Sbjct: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of Carg12149 vs. NCBI nr
Match: KAG6587918.1 (hypothetical protein SDJN03_16483, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 664.1 bits (1712), Expect = 6.4e-187
Identity = 332/333 (99.70%), Postives = 332/333 (99.70%), Query Frame = 0


Query: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMAVPFYALNCPAPVRRNANESIT FRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAVPFYALNCPAPVRRNANESITSFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
           GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300
           VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP
Sbjct: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of Carg12149 vs. NCBI nr
Match: XP_023530993.1 (uncharacterized protein LOC111793383 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 654.8 bits (1688), Expect = 3.9e-184
Identity = 327/333 (98.20%), Postives = 329/333 (98.80%), Query Frame = 0


Query: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMA+PFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 2   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 61

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 62  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 121

Query: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTF  NSSQHAQ DAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 122 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 181

Query: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
           GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 182 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 241

Query: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300
           VVLPD+ATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDE LNLLPP
Sbjct: 242 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 301

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 302 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334

[Close]

BLAST of Carg12149 vs. NCBI nr
Match: XP_022931647.1 (uncharacterized protein LOC111437803 isoform X1 [Cucurbita moschata])

HSP 1 Score: 652.5 bits (1682), Expect = 1.9e-183
Identity = 326/333 (97.90%), Postives = 328/333 (98.50%), Query Frame = 0


Query: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMA+PFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTF  NSSQHAQ DAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
            DTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300
           VVLPD+ATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDE LNLLPP
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of Carg12149 vs. NCBI nr
Match: XP_023006388.1 (uncharacterized protein LOC111499133 isoform X1 [Cucurbita maxima])

HSP 1 Score: 652.5 bits (1682), Expect = 1.9e-183
Identity = 326/333 (97.90%), Postives = 329/333 (98.80%), Query Frame = 0


Query: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMA+PFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           S+ GKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  SSAGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTFT NSSQHAQ DAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFTANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
           GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300
           VVLPD+ATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDE LNLLPP
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of Carg12149 vs. ExPASy Swiss-Prot
Match: O58403 (Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=PH0670 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-12
Identity = 64/251 (25.50%), Postives = 107/251 (42.63%), Query Frame = 0


Query: 82  TVGVIGGVSVISTL-LFLEKLVWWSLKDGQQSIPFVVCSDP--------ALGKGIPPLTS 141
           T+G++GG+  ++T  LF   ++    K  Q+    ++ ++P         LGKG  P   
Sbjct: 3   TIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILGKGEDPRPQ 62

Query: 142 LTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWLGD--TSCKLPFL 201
           L    +                      LE+ GA  +I PC+ +H ++ D   + K+P +
Sbjct: 63  LIWTAKR---------------------LEECGADFIIMPCNTAHAFVEDIRKAIKIPII 122

Query: 202 HVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFEVVLPDDATIK 261
            + +  A ++KE   K        + GLLAT   IV+G Y +     G E++ P +   K
Sbjct: 123 SMIEETAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQK 182

Query: 262 HILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPPDDPILKKCID 321
            ++    E +   + +  R LL     IL  R    +I    E   +L  DD +    ID
Sbjct: 183 DVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD-LKVPLID 223

[Close]

BLAST of Carg12149 vs. ExPASy TrEMBL
Match: A0A6J1L4S4 (uncharacterized protein LOC111499133 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499133 PE=4 SV=1)

HSP 1 Score: 652.5 bits (1682), Expect = 9.4e-184
Identity = 326/333 (97.90%), Postives = 329/333 (98.80%), Query Frame = 0


Query: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMA+PFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           S+ GKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  SSAGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTFT NSSQHAQ DAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFTANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
           GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300
           VVLPD+ATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDE LNLLPP
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of Carg12149 vs. ExPASy TrEMBL
Match: A0A6J1EU92 (uncharacterized protein LOC111437803 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437803 PE=4 SV=1)

HSP 1 Score: 652.5 bits (1682), Expect = 9.4e-184
Identity = 326/333 (97.90%), Postives = 328/333 (98.50%), Query Frame = 0


Query: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMA+PFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTF  NSSQHAQ DAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
            DTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLLPP 300
           VVLPD+ATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDE LNLLPP
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDELLNLLPP 300

Query: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 334
           DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA
Sbjct: 301 DDPILKKCIDPMDALARAAIKWSRSTGNLHEKA 333

[Close]

BLAST of Carg12149 vs. ExPASy TrEMBL
Match: A0A6J1KVR1 (uncharacterized protein LOC111499133 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499133 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 9.8e-149
Identity = 265/271 (97.79%), Postives = 268/271 (98.89%), Query Frame = 0


Query: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMA+PFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           S+ GKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  SSAGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTFT NSSQHAQ DAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFTANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
           GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNL 272
           VVLPD+ATIKHILVPAVEALNKRDQEGARNL
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNL 271

[Close]

BLAST of Carg12149 vs. ExPASy TrEMBL
Match: A0A6J1EZC0 (uncharacterized protein LOC111437803 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437803 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 9.8e-149
Identity = 265/271 (97.79%), Postives = 267/271 (98.52%), Query Frame = 0


Query: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           MLDGGMA+PFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI
Sbjct: 1   MLDGGMAMPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD
Sbjct: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120

Query: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPPLTSLTTF  NSSQHAQ DAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL
Sbjct: 121 PALGKGIPPLTSLTTFPANSSQHAQTDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180

Query: 181 GDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240
            DTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE
Sbjct: 181 SDTSCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQGFE 240

Query: 241 VVLPDDATIKHILVPAVEALNKRDQEGARNL 272
           VVLPD+ATIKHILVPAVEALNKRDQEGARNL
Sbjct: 241 VVLPDEATIKHILVPAVEALNKRDQEGARNL 271

[Close]

BLAST of Carg12149 vs. ExPASy TrEMBL
Match: A0A5A7TXR8 (Amino-acid racemase isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00390 PE=4 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 1.3e-148
Identity = 272/331 (82.18%), Postives = 294/331 (88.82%), Query Frame = 0


Query: 1   MLDGGMAVPFYALNCPAPVRRNANESITRFRRRLNPYSSLQIFSVVQTDENDNLPVSKKI 60
           ML GGMA+ FYA  CPAPVRRNANE ITRFRRR+N YSS+QI SVVQTD NDNLP SKKI
Sbjct: 2   MLHGGMAMHFYAPICPAPVRRNANEGITRFRRRINLYSSVQISSVVQTDANDNLPRSKKI 61

Query: 61  STPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKLVWWSLKDGQQSIPFVVCSD 120
           S+ GKS+SK R PKPLLVQPNTVGVIGGVSV STLLFLEKLVWWSLKDGQ+SIPFVVCS+
Sbjct: 62  SSLGKSLSKTRTPKPLLVQPNTVGVIGGVSVFSTLLFLEKLVWWSLKDGQESIPFVVCSE 121

Query: 121 PALGKGIPPLTSLTTFTENSSQHAQIDAPIIEILKQKCVFLEQSGARCLITPCHLSHRWL 180
           PALGKGIPP+TSL TF+ +SSQ+   DAPIIE L +K  FLE SGARCLITPCHL+HRWL
Sbjct: 122 PALGKGIPPVTSLCTFSTDSSQYGHSDAPIIENLNRKRAFLELSGARCLITPCHLTHRWL 181

Query: 181 GDT--SCKLPFLHVGDCVAMELKEAKLKPLEAGSSVRIGLLATDAAIVTGFYRERLQNQG 240
            DT  SCKLPFLHVGDCVA ELKEA LKPLE G +VRIGLLATD   VTG Y ERLQNQG
Sbjct: 182 SDTSESCKLPFLHVGDCVARELKEATLKPLEGGRNVRIGLLATDTT-VTGIYYERLQNQG 241

Query: 241 FEVVLPDDATIKHILVPAVEALNKRDQEGARNLLRIAVHILLIRAVNIVILASDEFLNLL 300
           F+V+LPD+AT+KHI++PAVEALNKRDQEGARNLLRIAVH+LLIRAVN+VILASDE LNLL
Sbjct: 242 FDVLLPDEATMKHIVIPAVEALNKRDQEGARNLLRIAVHVLLIRAVNMVILASDELLNLL 301

Query: 301 PPDDPILKKCIDPMDALARAAIKWSRSTGNL 330
           PPDDPILKKCIDPMDALARAAIKWSRST NL
Sbjct: 302 PPDDPILKKCIDPMDALARAAIKWSRSTENL 331

[Close]

BLAST of Carg12149 vs. TAIR 10
Match: AT1G15410.1 (aspartate-glutamate racemase family )

HSP 1 Score: 285.8 bits (730), Expect = 4.4e-77
Identity = 144/294 (48.98%), Postives = 206/294 (70.07%), Query Frame = 0


Query: 45  VVQTDENDNLPVSKK---ISTPGKSVSKGRAPKPLLVQPNTVGVIGGVSVISTLLFLEKL 104
           ++  DE+++LP  KK   +S   ++         LL Q NTVG+IGGVS  STL F++KL
Sbjct: 40  LLHMDESNDLPKPKKGFCLSEDSRNSLNSLPADSLLRQANTVGIIGGVSTDSTLKFVKKL 99

Query: 105 VWWSLKDGQQSIPFVVCSDPALGKGIPPLTSLTTFTEN---SSQHAQIDAP-----IIEI 164
           V WS  DG+ S+PFV+CSDPAL K       L  + EN   S  H +   P     I+E 
Sbjct: 100 VDWSSNDGKSSLPFVLCSDPALNK------ELLLYEENSYPSLYHREESTPVDPKLIVEN 159

Query: 165 LKQKCVFLEQSGARCLITPCHLSHRWLGDT--SCKLPFLHVGDCVAMELKEAKLKPLEAG 224
           L+ K  +LE+ GA+ ++ PCH++H W  +      +P LH+G+C+A EL+EAK+KPLEAG
Sbjct: 160 LRNKRRYLERCGAKLILMPCHIAHIWYEEVCEGSLVPLLHMGECIAKELQEAKMKPLEAG 219

Query: 225 SSVRIGLLATDAAIVTGFYRERLQNQGFEVVLPDDATIKHILVPAVEALNKRDQEGARNL 284
           + +R+G++AT A +  GFY+E+LQ+ GFE VLPD AT++H ++P++EA+ ++D EGARNL
Sbjct: 220 NPLRVGVMATSATLSAGFYQEKLQSNGFEAVLPDKATMEHTVIPSIEAMKRKDMEGARNL 279

Query: 285 LRIAVHILLIRAVNIVILASDEFLNLLPPDDPILKKCIDPMDALARAAIKWSRS 326
           LRIA+ +LL++AVN+V+L SDE  +LLP DDP+LKKC+DPMDALAR+AIKW+ +
Sbjct: 280 LRIALQVLLVQAVNVVMLGSDEMRDLLPGDDPLLKKCVDPMDALARSAIKWAEN 327

The following BLAST results are available for this feature:

BLAST of Carg12149 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021803.1	1.3e-187	100.00	hypothetical protein SDJN02_15531, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587918.1	6.4e-187	99.70	hypothetical protein SDJN03_16483, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023530993.1	3.9e-184	98.20	uncharacterized protein LOC111793383 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022931647.1	1.9e-183	97.90	uncharacterized protein LOC111437803 isoform X1 [Cucurbita moschata]	[more]
XP_023006388.1	1.9e-183	97.90	uncharacterized protein LOC111499133 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg12149 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O58403	1.7e-12	25.50	Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JC...	[more]

BLAST of Carg12149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L4S4	9.4e-184	97.90	uncharacterized protein LOC111499133 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EU92	9.4e-184	97.90	uncharacterized protein LOC111437803 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KVR1	9.8e-149	97.79	uncharacterized protein LOC111499133 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EZC0	9.8e-149	97.79	uncharacterized protein LOC111437803 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7TXR8	1.3e-148	82.18	Amino-acid racemase isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Carg12149 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15410.1	4.4e-77	48.98	aspartate-glutamate racemase family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.1860		coord: 82..317 e-value: 5.5E-39 score: 136.2
None	No IPR available	GENE3D	3.40.50.1860		coord: 194..311 e-value: 5.5E-39 score: 136.2
None	No IPR available	PANTHER	PTHR21198	GLUTAMATE RACEMASE	coord: 1..329
None	No IPR available	PANTHER	PTHR21198:SF9	ASPARTATE RACEMASE	coord: 1..329
IPR015942	Asp/Glu/hydantoin racemase	PFAM	PF01177	Asp_Glu_race	coord: 86..319 e-value: 4.2E-21 score: 75.8
IPR001920	Asp/Glu racemase	SUPERFAMILY	53681	Aspartate/glutamate racemase	coord: 82..202
IPR001920	Asp/Glu racemase	SUPERFAMILY	53681	Aspartate/glutamate racemase	coord: 215..322

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12149-RA	Carg12149-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006807	nitrogen compound metabolic process
molecular_function	GO:0036361	racemase activity, acting on amino acids and derivatives
molecular_function	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives