Carg12127 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12127
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DUF4050 family protein
Location	Carg_Chr11: 2364155 .. 2366384 (-)
RNA-Seq Expression	Carg12127
Synteny	Carg12127

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCAACTTCCTGCTTTCTTGCCCCAACTCTACTCCATCTCTCGCCTGTTACAGGTTCTTAGCTTCACTCTCGTTTTCCCTGAATCGATGCCCTTCTCTGCGCTTTTGGCTTAATATCAACATGGTTATGCTTAATAGTTCCTTCGCCGCCTGGATCAGCCGCTTGTTCGCTTGCATGGGGTAAGTTCTCGATTTTCCTCATCAATCGTTCATTGCGGTCTTGTAAAGGAGTTGTTATATTTGCTTCTAATGGAGTTTTGTGATGACCCTTTTGTGTTATCCATGGAATTGCTTCTGTTTTCTGGCTTACTGAATAGTGGACCATCTCCTTTTTTCTTCTTTTGCCAAGAATTTCACTATTTCAACTGTAATGTTTAATCCAAACGAAGAAAGGGGCTTGGGGGAAGTTGTGGGATTTCTTGTTCTTTTGGATTGCTGGTATTAATGTGAATTCCTGAAGGAACTATGAACGAAACTAAGTTTATTAAGATTCAAAGTTCGAAACCATTCCACATTCTGCTGCAATTTTATAGCATAGATAGTGCTTTATTAGGTTTATAACAGTGCAGGGGTTGTTTTGGATGCTGCACTAAACCAACACCTATTATTGCTGTGGATGAGCCATCTAAGGGATTAAGAATTCAAGGACGAGTCGTTAAGAAACGTAGCATATCTGATGGTTTTTGGAGCACAAGCACATGTGATTTGGATAATAGCACCATTCAATCTCAACCAAGCATCTCCTCTATCAGTACATCAAACCTCACACTCACTCATAGCAATGTTGGTGGCAGTGTGAGCAACCCTCCTGAATTTGTAAACCATGGCAAGTTTCCCTTCTGAATTCGTAAACCACCGCGGTTAGATCGCGATTGCTCATTCAAACCTGCTCAATATAGCAACAAACCAATTGCTCATTTTCATTGCTTTCAGGTCTTCTTCTCTGGAATCAGAACAGGCTGCAATGGATTGGTGGTAGTAGTAGCAGCAACACAACGGATCAAACTCAACAAAAACGGAAGGCGAAAATCAGGTCAGTTCACCAAATGTCTCTGCCTTTCGAAATTGTAGCCTCCCTTTGTAATTTCTTTCGCTAAGTGCTATCTTGTGAGATCCTATATCGGTTGGAGAGGGAAACGAAAGATTTCTTATAAGGATGTGGAAACCTCTCCTAAACTAATGTGTTTTAAAATCGTGAGGCTGACGGCGATACGTAACAGGGCCAAAGCGAAAAATATGTGCTAGTTGTGGGCTTGGGCTATTACAAATGGTATCAGAGCCAGACACCAGGCGGTGTGCCAGTGAGGACGCTAGACCCCCAAGGGGGGTGGATTGTAAGATCCCACATCGGTTGGAGAGGGGAACGAAGCGTTCCTTTTAAGGGTGTGGAAACCTCTCCCAAATAGACGTGTTTTAAAACCGTGAGGCTAACGGCGATACATAACGGGCCAAAGCGGACAATATCTGCTAGCGGTGGGCTTGGGTTGTTACAAATGATATCAGAGCCACGACACCGGGTAGTGTCTCCGCTGGGCTTCCAAGAGGGGTGGATTGTGAGATCACACATCGATTGGAGAGGGGAACAAGACATTCCTTATAAGGGTGTGAAAACCTCTCCCAAACAGACACGTTCTAAAACCGGGAGGCTGACGACGATACGTAAAGGGCCAAAGTAGACAATATTTACTAGCGGTGGGCTTGGGGTATTACAAATGGTATTAGAGCCAGACACCAGACGGTATGCCAGCAAGGACGCTGGACCTCCAAGGGGGGTGGATTATGAGATCGCACATCAGTTGGAGAGGGGAACGAAGCGTTCCTTTGAAGGGTGTGGAAACCTCTCCCAAACATACGTGTTTTAAAACCATGAGGTTGACGGCGATACGTACCGGGCCAAAGCAGACAATATCTACTAGTAATGAGCTTGGACCGTTATCGTAGTGATACAAAAATTTAGAACTAAAAGTCTCGGCGGAGATCATACTAAATCTTCATTCCATGCGTGTATATATGCATTTGCTTGCAGTTGGCGTGCAACATATGACAGTTTACTGAGTACAAGACAATCTTTTCCTCATCCAATTCCTTTGTCTGTAAGTTTGGTGTTGCAAGTATTGTCATTTCTTTCTCCACTGGTTTCATTGTAAGCCTAAGAACTTTAAGAACTTGATTTTAACAGGAAATGGTGAAGTTTCTTGTGGAAGTATGGGAACAGGAGGGCCTATATGA

mRNA sequence

CATCCAACTTCCTGCTTTCTTGCCCCAACTCTACTCCATCTCTCGCCTGTTACAGGTTCTTAGCTTCACTCTCGTTTTCCCTGAATCGATGCCCTTCTCTGCGCTTTTGGCTTAATATCAACATGGTTATGCTTAATAGTTCCTTCGCCGCCTGGATCAGCCGCTTGTTCGCTTGCATGGGGGGTTGTTTTGGATGCTGCACTAAACCAACACCTATTATTGCTGTGGATGAGCCATCTAAGGGATTAAGAATTCAAGGACGAGTCGTTAAGAAACGTAGCATATCTGATGGTTTTTGGAGCACAAGCACATGTGATTTGGATAATAGCACCATTCAATCTCAACCAAGCATCTCCTCTATCAGTACATCAAACCTCACACTCACTCATAGCAATGTTGGTGGCAGTGTGAGCAACCCTCCTGAATTTGTCTTCTTCTCTGGAATCAGAACAGGCTGCAATGGATTGGTGGTAGTAGTAGCAGCAACACAACGGATCAAACTCAACAAAAACGGAAGGCGAAAATCAGGAAATGGTGAAGTTTCTTGTGGAAGTATGGGAACAGGAGGGCCTATATGA

Coding sequence (CDS)

ATGGTTATGCTTAATAGTTCCTTCGCCGCCTGGATCAGCCGCTTGTTCGCTTGCATGGGGGGTTGTTTTGGATGCTGCACTAAACCAACACCTATTATTGCTGTGGATGAGCCATCTAAGGGATTAAGAATTCAAGGACGAGTCGTTAAGAAACGTAGCATATCTGATGGTTTTTGGAGCACAAGCACATGTGATTTGGATAATAGCACCATTCAATCTCAACCAAGCATCTCCTCTATCAGTACATCAAACCTCACACTCACTCATAGCAATGTTGGTGGCAGTGTGAGCAACCCTCCTGAATTTGTCTTCTTCTCTGGAATCAGAACAGGCTGCAATGGATTGGTGGTAGTAGTAGCAGCAACACAACGGATCAAACTCAACAAAAACGGAAGGCGAAAATCAGGAAATGGTGAAGTTTCTTGTGGAAGTATGGGAACAGGAGGGCCTATATGA

Protein sequence

MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFVFFSGIRTGCNGLVVVVAATQRIKLNKNGRRKSGNGEVSCGSMGTGGPI

Homology

[Close]

BLAST of Carg12127 vs. NCBI nr
Match: KAG7021782.1 (hypothetical protein SDJN02_15509 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.9 bits (777), Expect = 7.7e-79
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60

Query: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFVFFSGIRTGCNGLVVVVA 120
           TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFVFFSGIRTGCNGLVVVVA
Sbjct: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFVFFSGIRTGCNGLVVVVA 120

Query: 121 ATQRIKLNKNGRRKSGNGEVSCGSMGTGGPI 152
           ATQRIKLNKNGRRKSGNGEVSCGSMGTGGPI
Sbjct: 121 ATQRIKLNKNGRRKSGNGEVSCGSMGTGGPI 151

[Close]

BLAST of Carg12127 vs. NCBI nr
Match: KAG6587898.1 (hypothetical protein SDJN03_16463, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-49
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS
Sbjct: 260 MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 319

Query: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNP EFV
Sbjct: 320 TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPSEFV 362

[Close]

BLAST of Carg12127 vs. NCBI nr
Match: XP_022971935.1 (uncharacterized protein LOC111470604 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 8.3e-49
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS
Sbjct: 74  MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 133

Query: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVG SVSNP EFV
Sbjct: 134 TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFV 176

[Close]

BLAST of Carg12127 vs. NCBI nr
Match: XP_023531005.1 (uncharacterized protein LOC111793390 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 8.3e-49
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60

Query: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           TSTCDLDNSTIQSQPSISSISTS LTLTHSNVGGSVSNP EFV
Sbjct: 61  TSTCDLDNSTIQSQPSISSISTSTLTLTHSNVGGSVSNPSEFV 103

[Close]

BLAST of Carg12127 vs. NCBI nr
Match: XP_022933439.1 (uncharacterized protein LOC111440853 [Cucurbita moschata])

HSP 1 Score: 204.1 bits (518), Expect = 8.3e-49
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60

Query: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVG SVSNP EFV
Sbjct: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFV 103

[Close]

BLAST of Carg12127 vs. ExPASy TrEMBL
Match: A0A6J1I744 (uncharacterized protein LOC111470604 OS=Cucurbita maxima OX=3661 GN=LOC111470604 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.0e-49
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS
Sbjct: 74  MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 133

Query: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVG SVSNP EFV
Sbjct: 134 TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFV 176

[Close]

BLAST of Carg12127 vs. ExPASy TrEMBL
Match: A0A6J1EZS6 (uncharacterized protein LOC111440853 OS=Cucurbita moschata OX=3662 GN=LOC111440853 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.0e-49
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60

Query: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVG SVSNP EFV
Sbjct: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGASVSNPSEFV 103

[Close]

BLAST of Carg12127 vs. ExPASy TrEMBL
Match: A0A6J1CTQ5 (uncharacterized protein LOC111014486 OS=Momordica charantia OX=3673 GN=LOC111014486 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 96/103 (93.20%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGR+VKK SISDGFWS
Sbjct: 78  MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRIVKKPSISDGFWS 137

Query: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           TSTCDLDNSTIQSQ SISSISTSNLTL  SNVGGS SNP EFV
Sbjct: 138 TSTCDLDNSTIQSQRSISSISTSNLTLNPSNVGGSTSNPSEFV 180

[Close]

BLAST of Carg12127 vs. ExPASy TrEMBL
Match: A0A6J1H9M2 (uncharacterized protein LOC111461800 OS=Cucurbita moschata OX=3662 GN=LOC111461800 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKK SISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKPSISDGFWS 60

Query: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           TSTCDLDNSTIQSQ SISSISTSNLT + SNVGGSVSNP E+V
Sbjct: 61  TSTCDLDNSTIQSQRSISSISTSNLTHSQSNVGGSVSNPSEYV 103

[Close]

BLAST of Carg12127 vs. ExPASy TrEMBL
Match: A0A5A7U2N6 (DUF4050 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G002060 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWS 60
           MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKK SISDGFWS
Sbjct: 1   MVMLNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKPSISDGFWS 60

Query: 61  TSTCDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           TSTCDLDNSTIQSQ SISSISTSNLTL++SNV GSVS+  EFV
Sbjct: 61  TSTCDLDNSTIQSQRSISSISTSNLTLSNSNVAGSVSSSSEFV 103

[Close]

BLAST of Carg12127 vs. TAIR 10
Match: AT5G25360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 131.0 bits (328), Expect = 8.3e-31
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 4   LNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTST 63
           L     +WI +LF CMGGCFGCC KP  I+AVDEPSKGLRIQGR+VKK S+S+ FWSTST
Sbjct: 3   LREIIPSWIYQLFGCMGGCFGCCNKPPLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTST 62

Query: 64  CDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           C++DNST+QSQ S+SSIS +N T T      S SNP EFV
Sbjct: 63  CEMDNSTLQSQRSMSSISFTNNTST----SASTSNPTEFV 98

[Close]

BLAST of Carg12127 vs. TAIR 10
Match: AT5G25360.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). )

HSP 1 Score: 131.0 bits (328), Expect = 8.3e-31
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 4   LNSSFAAWISRLFACMGGCFGCCTKPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTST 63
           L     +WI +LF CMGGCFGCC KP  I+AVDEPSKGLRIQGR+VKK S+S+ FWSTST
Sbjct: 3   LREIIPSWIYQLFGCMGGCFGCCNKPPLIVAVDEPSKGLRIQGRLVKKPSVSEDFWSTST 62

Query: 64  CDLDNSTIQSQPSISSISTSNLTLTHSNVGGSVSNPPEFV 104
           C++DNST+QSQ S+SSIS +N T T      S SNP EFV
Sbjct: 63  CEMDNSTLQSQRSMSSISFTNNTST----SASTSNPTEFV 98

[Close]

BLAST of Carg12127 vs. TAIR 10
Match: AT4G32342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 22 CFGCCTKPTP-IIAVDEPSKGLRIQGRVVKKRSI-SDGFWSTSTCDLD-NSTIQSQ---- 81
          CFGCC +    ++ VDEPSKGL+IQG++VKK S  SD FWSTSTCD+D N TIQSQ    
Sbjct: 17 CFGCCNRERRLVVEVDEPSKGLKIQGKIVKKDSASSDDFWSTSTCDMDHNITIQSQSSNP 76

Query: 82 PSISSISTSNLT 87
          P     STSN T
Sbjct: 77 PFDPQCSTSNST 88

[Close]

BLAST of Carg12127 vs. TAIR 10
Match: AT1G15350.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-09
Identity = 37/87 (42.53%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 19  MGGCFGCCT--KPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLDNSTIQSQPS 78
           MGGC GC    + T     D PS  +    R  KK S+S+ FWSTST D+DN T  SQ S
Sbjct: 1   MGGCVGCYREHRSTAASLKDPPSNSI---ARPCKKPSVSEDFWSTSTVDMDNITFPSQGS 60

Query: 79  ISSISTSNLTLTHSNVGGSVSNPPEFV 104
           +SS   SN T    +   + + PPE+V
Sbjct: 61  LSS---SNQTFDSQSAARNSNAPPEYV 81

[Close]

BLAST of Carg12127 vs. TAIR 10
Match: AT1G15350.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 148 Blast hits to 148 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-09
Identity = 37/87 (42.53%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 19  MGGCFGCCT--KPTPIIAVDEPSKGLRIQGRVVKKRSISDGFWSTSTCDLDNSTIQSQPS 78
           MGGC GC    + T     D PS  +    R  KK S+S+ FWSTST D+DN T  SQ S
Sbjct: 1   MGGCVGCYREHRSTAASLKDPPSNSI---ARPCKKPSVSEDFWSTSTVDMDNITFPSQGS 60

Query: 79  ISSISTSNLTLTHSNVGGSVSNPPEFV 104
           +SS   SN T    +   + + PPE+V
Sbjct: 61  LSS---SNQTFDSQSAARNSNAPPEYV 81

The following BLAST results are available for this feature:

BLAST of Carg12127 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021782.1	7.7e-79	100.00	hypothetical protein SDJN02_15509 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6587898.1	1.7e-49	99.03	hypothetical protein SDJN03_16463, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022971935.1	8.3e-49	98.06	uncharacterized protein LOC111470604 [Cucurbita maxima]	[more]
XP_023531005.1	8.3e-49	98.06	uncharacterized protein LOC111793390 [Cucurbita pepo subsp. pepo]	[more]
XP_022933439.1	8.3e-49	98.06	uncharacterized protein LOC111440853 [Cucurbita moschata]	[more]

BLAST of Carg12127 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12127 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I744	4.0e-49	98.06	uncharacterized protein LOC111470604 OS=Cucurbita maxima OX=3661 GN=LOC111470604...	[more]
A0A6J1EZS6	4.0e-49	98.06	uncharacterized protein LOC111440853 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A6J1CTQ5	1.2e-45	93.20	uncharacterized protein LOC111014486 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1H9M2	2.1e-45	93.20	uncharacterized protein LOC111461800 OS=Cucurbita moschata OX=3662 GN=LOC1114618...	[more]
A0A5A7U2N6	1.7e-44	92.23	DUF4050 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6...	[more]

BLAST of Carg12127 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25360.1	8.3e-31	65.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G25360.2	8.3e-31	65.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G32342.1	1.6e-13	59.72	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G15350.2	5.2e-09	42.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15350.1	5.2e-09	42.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..151
None	No IPR available	PANTHER	PTHR33373:SF13	DUF4050 FAMILY PROTEIN	coord: 1..103
None	No IPR available	PANTHER	PTHR33373	OS07G0479600 PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12127-RA	Carg12127-RA	mRNA