Carg12117 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12117
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	Carg_Chr11: 2300282 .. 2302949 (-)
RNA-Seq Expression	Carg12117
Synteny	Carg12117

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTATCATCAATTGTCGGATATTCAACCAACCAGAAGATCATCAGGTATCAGTAGGAGGGTGCTGTTTAATTGTACTCTCTCTATACATGTCCATGCATGAATATAATATATATGTTCATTGGAGTTCAATTATATTAGTGCTTTTTGTTTGCTCTTCCTTTTCTAGAACTTGGTAGGTGAGTAGGAAAACAACACAATACCTAACTACTTCCTTATTGTTTATTCAATGCAACTACATGCAGAGCTCTACAAAACAAATAATTCATAGAAATATGTGTATTATAGTTAAATTTCGACAATAAAATCATACTTTAAAGGGAATACAAGATTGACTCCGACTCAGAGCAAAATTGAATTAGATAGGTCAAGTTAGCTGAACTTAGTCAAGCCAAACACCATGGGCTATGGTCAATTAAAATATTAGAGATGCTATGTTTAAACCCTAGGTTAACCCGTGTAAGAAACGCCATCGAACCTAACGTAAACTCAAACTTACTCTAAGTTTGCTACATTTTTTAAATCTTTGATTATGTATGGGAATGTAGGGTAACAATCACATTTTGCATTTATACGTTCAAATATTCTAATATAATTTCAAAGCTATCATAAATATTTATTCGAAAACGTTATAATAATTGTATTAATAAGCTATTTAATTCTACATTTTTTTTTATTTTTTATGTAATATATTTCTATATTTTAGAAAGTGTCTTATAATTATTTAATTTCAATTTTTTATCTAATAATTCTTTAAATTTTTAATTCTTTCTCGTCCATCTATCTATACAACTTTTTTTAAAAGAAAAAAAAAATTAATCTATTAAATAAAAATTAAAAGTTTAGATATATATATATATATATTATAAAATTACAAATAAAATTGTGTGTATATATACAAATGAATTTGGGAAAAATATTTTGACCAAAAAAAAAAAAGTCAAAAGGGTTGTCGTTTTCAGGTTCTCTGATAACTGTTTCCCGCTTTCACAGCGAAACCAACGAACAAGCCAGAAAGGCTTTTTCTGTTACGCCCTCATTTCGTGTTTTCCGAACCCTAGACCTGACTGAAAATCGCATTAAGAGTTCAAGACTCTGCTCTTCCCAAATCAATACTTGAAAATCTACCATTCATCCTTCTACTACCTGAATTCTGTACTGCAGGTCCATTCATGCCTCGCATTGAACCGAATATTCCGGATTCATGTTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGTCGGAGTCTTCGCTACCAGAGGCTTCCATCGCGGCTCCTCCACCTCTCCGTCTTGAAATTGGACGGTTCTTCCTTCGGTAACCTTTTCCCCCCCTTTGTATGGATGCATACATCTTGCAAATCTTGCTGTGTTGGATTACGCATTTCTGTGAATAATCTGTGTGTATTTTAAATGTTTTTGATATTGATTTGAGATTTATTTTCCAAAACGTTTGGATGTTCTGCCATCGGTTGTTCTTTGGTAATGTGAATGCTTAGAGGTGCAAGTTGCGAGGAAAGCGTCTGTGGCAAAGCTTAGAGAGGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAGAGAAGATGTCAAGATTTCATGGTACAGTGTTGGGGATTTGGACTACTGAACCGCGCATATTAATCTAATCTGTTTGATTGAAAATGTGTTCAATTGTTTAATTAGTTGGTGCAAATGCAGGCCACATGTGTGGAGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATCGACGAGAAATCGCGTATCAAACGCTTTGGAATCAGGGATGGTGATCTGGTATTCCCCTCGAATGCTTAACCTGCCTTAATTTATAGTTTTCTCTGTTTGAGTTCTGTCTTGTATTTGATCTTGTAATTAATGAGTTCTATGTTCCCCCATGCAGCTGCATTTTGTGAACCGTGTAGCTTAATTTTCGCCAAGAATCAGTGGATTTGGGATGGCCCAAAAGAATGAATGGATAGAGTAATATAGGCAGGCTGGTTGAACGGCTTCTGGTATAAACTTGTCGGAAGTTTTTGGGTGTGAATTATTGTGAAGTGGTCAGATGGGTTTTTTTTTTTTTTTCATTTTTTTTCTTGATTTTTTTTACTTTCCTGATGCTAAATTTGAAGCCTTGGTTTATATATATATAACAAGATGAACTACATTTCGTTTGTGCCACATAAGACTTCACTTTCCTTTCGTCCAATCCAAAAATGAAGTCCATTAGTTCAGCCTCTAAGGTATTCAAATTGCTCTAAGAAGAGAATAGATGGAAGAATGGCAATGAAGATATGCCCAAGTGATCTGACATTGATACATTTTGCAGGAGAATCTGAGAGGATGAATGCTATTATTGCCCGATCAACTTGATGTTATGGGGAGTGCAAGCTCTACAGTGTGTGAAGCTATGAACTCTGAAGATTTTCAGCTGAGATTATATGTTTCTGTGGCCTTAATTTATGCACTTAGAAAATTATTCTGTCTTGTAAGTTGAGACTTGGAAAGAATTCATAAATTTTAATGCTTTGATAGTTTCTTTATTAAACGAATAGTTGCCTAGAAACTTTAGGCGTTTAAACATGAATCAGAATGAGCATCAATGACCACCTACTACTTCTTCTCCTTTCCTGTTAAAGATCATGGTTTAGGTTATTA

mRNA sequence

ATGGGTCCATTCATGCCTCGCATTGAACCGAATATTCCGGATTCATGTTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGTCGGAGTCTTCGCTACCAGAGGCTTCCATCGCGGCTCCTCCACCTCTCCGTCTTGAAATTGGACGGTTCTTCCTTCGAGGTGCAAGTTGCGAGGAAAGCGTCTGTGGCAAAGCTTAGAGAGGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAGAGAAGATGTCAAGATTTCATGGCCACATGTGTGGAGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATCGACGAGAAATCGCGTATCAAACGCTTTGGAATCAGGGATGGTGATCTGCTGCATTTTGTGAACCGTGTAGCTTAATTTTCGCCAAGAATCAGTGGATTTGGGATGGCCCAAAAGAATGAATGGATAGAGTAATATAGGCAGGCTGGTTGAACGGCTTCTGGTATAAACTTGTCGGAAGTTTTTGGGTGTGAATTATTGTGAAGTGGAGAATCTGAGAGGATGAATGCTATTATTGCCCGATCAACTTGATGTTATGGGGAGTGCAAGCTCTACAGTGTGTGAAGCTATGAACTCTGAAGATTTTCAGCTGAGATTATATGTTTCTGTGGCCTTAATTTATGCACTTAGAAAATTATTCTGTCTTGTAAGTTGAGACTTGGAAAGAATTCATAAATTTTAATGCTTTGATAGTTTCTTTATTAAACGAATAGTTGCCTAGAAACTTTAGGCGTTTAAACATGAATCAGAATGAGCATCAATGACCACCTACTACTTCTTCTCCTTTCCTGTTAAAGATCATGGTTTAGGTTATTA

Coding sequence (CDS)

ATGGGTCCATTCATGCCTCGCATTGAACCGAATATTCCGGATTCATGTTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGTCGGAGTCTTCGCTACCAGAGGCTTCCATCGCGGCTCCTCCACCTCTCCGTCTTGAAATTGGACGGTTCTTCCTTCGAGGTGCAAGTTGCGAGGAAAGCGTCTGTGGCAAAGCTTAGAGAGGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAGAGAAGATGTCAAGATTTCATGGCCACATGTGTGGAGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATCGACGAGAAATCGCGTATCAAACGCTTTGGAATCAGGGATGGTGATCTGCTGCATTTTGTGAACCGTGTAGCTTAA

Protein sequence

MGPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

Homology

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BLAST of Carg12117 vs. NCBI nr
Match: KAG7021772.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.4 bits (690), Expect = 8.0e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MGPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARK 60
           MGPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARK
Sbjct: 1   MGPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARK 60

Query: 61  ASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGD 120
           ASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGD
Sbjct: 61  ASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGD 120

Query: 121 LLHFVNRVA 130
           LLHFVNRVA
Sbjct: 121 LLHFVNRVA 129

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BLAST of Carg12117 vs. NCBI nr
Match: XP_023531556.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 2.6e-67
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 2   GPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKA 61
           GPFM RIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKA
Sbjct: 18  GPFMSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKA 77

Query: 62  SVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDL 121
           SVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDL
Sbjct: 78  SVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDL 137

Query: 122 LHFVNRVA 130
           LHFVNRVA
Sbjct: 138 LHFVNRVA 145

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BLAST of Carg12117 vs. NCBI nr
Match: XP_022927502.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata] >XP_022927511.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 6.4e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 5   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 64
           MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 65  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 124
           KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 125 VNRVA 130
           VNRVA
Sbjct: 121 VNRVA 125

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BLAST of Carg12117 vs. NCBI nr
Match: XP_022973901.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 258.1 bits (658), Expect = 4.1e-65
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 5   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 64
           MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 65  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 124
           KLREAVESVFCGM MNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF
Sbjct: 61  KLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 125 VNRVA 130
           VNR+A
Sbjct: 121 VNRIA 125

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BLAST of Carg12117 vs. NCBI nr
Match: XP_023531557.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.7 bits (657), Expect = 5.4e-65
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 5   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 64
           M RIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA
Sbjct: 1   MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 65  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 124
           KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 125 VNRVA 130
           VNRVA
Sbjct: 121 VNRVA 125

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BLAST of Carg12117 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 41  LHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCY 100
           + LSV+KLDGSS +V V   A++  L+  ++     M   N     ISW HVWS+FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 101 KHYKLIDEKSRIKRFGIRDGDLLHFV 126
            + KL+D+ + ++  GIR+   + F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

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BLAST of Carg12117 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.5e-05
Identity = 25/86 (29.07%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 45  VLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNRED--VKISWPHVWSHFCLCYKHY 104
           V K+DG    V V + A+V  L++A++  +  +   RE     ISW +VW  + L     
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQR-YVQLKQEREGGIQHISWSYVWRTYHLTSAGE 104

Query: 105 KLIDEKSRIKRFGIRDGDLLHFVNRV 129
           KL +++ +++ +GIR+ D + F+ ++
Sbjct: 105 KLTEDRKKLRDYGIRNRDEVSFIKKL 129

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BLAST of Carg12117 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.5e-05
Identity = 25/86 (29.07%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 45  VLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNRED--VKISWPHVWSHFCLCYKHY 104
           V K+DG    V V + A+V  L++A++  +  +   RE     ISW +VW  + L     
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYHLTSAGE 95

Query: 105 KLIDEKSRIKRFGIRDGDLLHFVNRV 129
           KL +++ +++ +GIR+ D + F+ ++
Sbjct: 96  KLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Carg12117 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 25/86 (29.07%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 45  VLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNRED--VKISWPHVWSHFCLCYKHY 104
           V K+DG    V V + A+V  L++A++  +  +   RE     ISW +VW  + L     
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLRQEREGGIQHISWSYVWRTYHLTSAGE 95

Query: 105 KLIDEKSRIKRFGIRDGDLLHFVNRV 129
           KL +++ +++ +GIR+ D + F+ ++
Sbjct: 96  KLTEDRKKLRDYGIRNRDEVSFIKKL 120

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BLAST of Carg12117 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.1e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 5   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 64
           MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 65  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 124
           KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 125 VNRVA 130
           VNRVA
Sbjct: 121 VNRVA 125

[Close]

BLAST of Carg12117 vs. ExPASy TrEMBL
Match: A0A6J1I9W9 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111472494 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 5   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 64
           MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 65  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 124
           KLREAVESVFCGM MNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF
Sbjct: 61  KLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 125 VNRVA 130
           VNR+A
Sbjct: 121 VNRIA 125

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BLAST of Carg12117 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.9e-50
Identity = 95/122 (77.87%), Postives = 107/122 (87.70%), Query Frame = 0


Query: 4   FMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASV 63
           FM +IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+V
Sbjct: 3   FMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATV 62

Query: 64  AKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLH 123
           A +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LH
Sbjct: 63  AAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLH 122

Query: 124 FV 126
           FV
Sbjct: 123 FV 124

[Close]

BLAST of Carg12117 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.9e-50
Identity = 95/122 (77.87%), Postives = 107/122 (87.70%), Query Frame = 0


Query: 4   FMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASV 63
           FM +IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+V
Sbjct: 3   FMSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATV 62

Query: 64  AKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLH 123
           A +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LH
Sbjct: 63  AAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLH 122

Query: 124 FV 126
           FV
Sbjct: 123 FV 124

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BLAST of Carg12117 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.0e-49
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 5   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 64
           M  IEP +PDSCCISPRF SNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 65  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 124
            +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 125 V 126
           V
Sbjct: 121 V 121

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BLAST of Carg12117 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 7.9e-22
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 28  RRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKIS 87
           RRS  Y ++P   + L+VLKLDGSSF +QV + A+V +L+ AVE+ F  + ++    KIS
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG-KIS 84

Query: 88  WPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 130
           WPHVW  FCL Y+  +LI+E   +  FGI+DGD L F+  ++
Sbjct: 85  WPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS 125

[Close]

BLAST of Carg12117 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-21
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 0


Query: 18  ISPRFRSN---------SFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLRE 77
           I PRF S+         S RRS   +  P   + LSV+KL+GS F+V+VA+  SVA+L+ 
Sbjct: 21  IDPRFLSSFALNDGGSISGRRSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKR 80

Query: 78  AVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRV 130
           AVE VF    +    + ISW HVW HFCLCY+  +L+++K+ I+  G+ DGD LHFV  +
Sbjct: 81  AVEQVFTISPLEGHGM-ISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHL 140

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BLAST of Carg12117 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-20
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 28  RRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKIS 87
           RR+  Y +LP+  + LSVLKLDGSSF+V V   A+V  L+ A+E+ F  +   +   KIS
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVP-KKGPSKIS 65

Query: 88  WPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 130
           W HVW HFCLC+   KLI +   I  +G++DGD + F N V+
Sbjct: 66  WSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVS 106

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BLAST of Carg12117 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-17
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 36  LPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHF 95
           +P   + L+VLKLDGSSF   V + A+V +L+ AVE+ F  + ++    KISWPHVW  F
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQF 60

Query: 96  CLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA 130
           CL Y+  +LI+E   +  FGI+DGD L F+  ++
Sbjct: 61  CLSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS 90

[Close]

BLAST of Carg12117 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 9.0e-10
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 41  LHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCY 100
           + LSV+KLDGSS +V V   A++  L+  ++     M   N     ISW HVWS+FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 101 KHYKLIDEKSRIKRFGIRDGDLLHFV 126
            + KL+D+ + ++  GIR+   + F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

The following BLAST results are available for this feature:

BLAST of Carg12117 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021772.1	8.0e-69	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyr...	[more]
XP_023531556.1	2.6e-67	99.22	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbit...	[more]
XP_022927502.1	6.4e-66	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata]...	[more]
XP_022973901.1	4.1e-65	98.40	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima]	[more]
XP_023531557.1	5.4e-65	99.20	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbit...	[more]

BLAST of Carg12117 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	1.3e-08	37.21	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	8.5e-05	29.07	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q8VIK1	8.5e-05	29.07	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q3ZBQ4	1.1e-04	29.07	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]

BLAST of Carg12117 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHC7	3.1e-66	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]
A0A6J1I9W9	2.0e-65	98.40	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima ...	[more]
A0A5A7U4H4	6.9e-50	77.87	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	6.9e-50	77.87	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A0A0LT94	2.0e-49	78.51	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]

BLAST of Carg12117 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32270.1	7.9e-22	46.08	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	1.7e-21	43.80	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	1.9e-20	46.08	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	4.5e-17	44.68	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	9.0e-10	37.21	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 41..128 e-value: 4.7E-24 score: 84.3
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 41..127 e-value: 1.45258E-34 score: 113.382
None	No IPR available	GENE3D	3.10.20.90		coord: 37..129 e-value: 1.5E-30 score: 107.0
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 10..128
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 10..128
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 37..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12117-RA	Carg12117-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex