Carg11806 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11806
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 1033765 .. 1035046 (-)
RNA-Seq ExpressionCarg11806
SyntenyCarg11806
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACTAGGCACTAACCGCGCGATGGTTCTGGTAATGGTCAACGCTCTGGCCTTGCGCCAATCCGTACTCCTTGCAAATGGATAAGATCGATCTCTCCCATGTTGTCCTAATCTTCTTTTTTCTTCAGATTTACTTATCGGGTCATTTCCCATCACTTTGTTGGGAAAAAACGGGTGGTTTTCCTCCTAACTCTCGACGCATCCCACAAGTTTGTGGATAGTGATCCAATTTTCATCTATTTCAGACCTTTTCGTGTAGACCCACTTCAATGCCTCAGCGCAAATTGGCTTAATAATCGTTTCTCAGCGGCAGATTTCCAATTGGGCGACGGGGGACCCGATATTTGGTTGTGTGGAGGGTACTGGACACTCGCTGTTGGCCCGGAATCAAATGCTTTAGATGTGTTGCTTGAAAGCGATTTGAGGACACTCGTCGCTCAAGGAGAGGGATACCGATCAATATCAGTCTTTATCGAGATTTTGAATGCTGGATTTTCTGTGGGATGTGAGTAATTTTCTACGTGTTTATCCAACTGTGAGAAGGGATTTTGATTTCTTTATTTTATTTGTGGCTCTATGTAATTCTGAAGCCATACAGACCAAGGGTTTTTTGTCTGGCCCTGTTTGTGTGATGTGGGTTTGTTCCATTTGCTGGAGATTGGCACGTTCTTGAAGGAGACGATCAGTACAGAAATATTGATCCCAGACGTTTTATCTGGTGAGTAAGAAGTTGAATTCGATCAAATTTAGCCAAAAATAGATCTGGGTCTTTTCTTTTTCATTACAAGTATTTGGATTATGACTTTGCAAGTTATAAATTCATGATTAGGCGGATTAGGTGGATTCACTTTCTGCTAACAGCTTCTGTGTTCTAATCTGAGGATTTTCATTTGTGTTTCTTAGATATTCTCTCTTTCAATTAGGTGTGTTTGTTCTTCCATTAACATCTCCAGATTATAAGTATGCTACTGGTGGAGGGAGTTATTGGATAGGTGTGTTTTTCCCTTTAATTTGAGTTTGCCTGAATTGGAACTCCTTTTAGTTTCATTTTGACTCTAGTTTTTCCCTTAATTTAAGGGTTTGTATACCTGGAAATTAGTTTTCTATTTATGAACATGACCATATACCTCTGATTTTGACTCTGTTTTGGATGCATGCATATGGTTCTGATCATTTGGGACTGAATTTTTCCTTCACTTAAAAGATAAGATCGTTTTGTTTCTTATATGGATGATCTTAGCAATATGTATGTTTCAGGGTTGAGTTGTGAGACAACCTAG

mRNA sequence

ATGCCACTAGGCACTAACCGCGCGATGGTTCTGATTTACTTATCGGGTCATTTCCCATCACTTTGTTGGGAAAAAACGGACCCACTTCAATGCCTCAGCGCAAATTGGCTTAATAATCGTTTCTCAGCGGCAGATTTCCAATTGGGCGACGGGGGACCCGATATTTGGTTGTGTGGAGGGTACTGGACACTCGCTGTTGGCCCGGAATCAAATGCTTTAGATGTGTTGCTTGAAAGCGATTTGAGGACACTCGTCGCTCAAGGAGAGGGATACCGATCAATATCAGTCTTTATCGAGATTTTGAATGCTGGATTTTCTGTGGGATGTGTGTTTGTTCTTCCATTAACATCTCCAGATTATAAGTATGCTACTGGTGGAGGGAGTTATTGGATAGGGTTGAGTTGTGAGACAACCTAG

Coding sequence (CDS)

ATGCCACTAGGCACTAACCGCGCGATGGTTCTGATTTACTTATCGGGTCATTTCCCATCACTTTGTTGGGAAAAAACGGACCCACTTCAATGCCTCAGCGCAAATTGGCTTAATAATCGTTTCTCAGCGGCAGATTTCCAATTGGGCGACGGGGGACCCGATATTTGGTTGTGTGGAGGGTACTGGACACTCGCTGTTGGCCCGGAATCAAATGCTTTAGATGTGTTGCTTGAAAGCGATTTGAGGACACTCGTCGCTCAAGGAGAGGGATACCGATCAATATCAGTCTTTATCGAGATTTTGAATGCTGGATTTTCTGTGGGATGTGTGTTTGTTCTTCCATTAACATCTCCAGATTATAAGTATGCTACTGGTGGAGGGAGTTATTGGATAGGGTTGAGTTGTGAGACAACCTAG

Protein sequence

MPLGTNRAMVLIYLSGHFPSLCWEKTDPLQCLSANWLNNRFSAADFQLGDGGPDIWLCGGYWTLAVGPESNALDVLLESDLRTLVAQGEGYRSISVFIEILNAGFSVGCVFVLPLTSPDYKYATGGGSYWIGLSCETT
Homology
[Close]
BLAST of Carg11806 vs. NCBI nr
Match: KAG7029381.1 (hypothetical protein SDJN02_07719, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.1 bits (762), Expect = 3.8e-77
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MPLGTNRAMVLIYLSGHFPSLCWEKTDPLQCLSANWLNNRFSAADFQLGDGGPDIWLCGG 60
           MPLGTNRAMVLIYLSGHFPSLCWEKTDPLQCLSANWLNNRFSAADFQLGDGGPDIWLCGG
Sbjct: 1   MPLGTNRAMVLIYLSGHFPSLCWEKTDPLQCLSANWLNNRFSAADFQLGDGGPDIWLCGG 60

Query: 61  YWTLAVGPESNALDVLLESDLRTLVAQGEGYRSISVFIEILNAGFSVGCVFVLPLTSPDY 120
           YWTLAVGPESNALDVLLESDLRTLVAQGEGYRSISVFIEILNAGFSVGCVFVLPLTSPDY
Sbjct: 61  YWTLAVGPESNALDVLLESDLRTLVAQGEGYRSISVFIEILNAGFSVGCVFVLPLTSPDY 120

Query: 121 KYATGGGSYWIGLSCETT 139
           KYATGGGSYWIGLSCETT
Sbjct: 121 KYATGGGSYWIGLSCETT 138

[Close]
BLAST of Carg11806 vs. NCBI nr
Match: KAG6598438.1 (hypothetical protein SDJN03_08216, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-40
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 25  KTDPLQCLSANWLNNRFSAADFQLGDGGPDIWLCGGYWTLAVGPESNALDVLLESDLRTL 84
           + DPLQCLSANWLNNRFSAADFQLGDGGPDIWLCGGYWTLAVGPESNALDVLLESDLRTL
Sbjct: 125 RVDPLQCLSANWLNNRFSAADFQLGDGGPDIWLCGGYWTLAVGPESNALDVLLESDLRTL 184

Query: 85  VAQGEGYRSISVFIEILNAGFSVGCV 111
           VAQGEGYRSISVFIEILNAGFSVG +
Sbjct: 185 VAQGEGYRSISVFIEILNAGFSVGSI 210

The following BLAST results are available for this feature:
BLAST of Carg11806 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029381.13.8e-77100.00hypothetical protein SDJN02_07719, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6598438.11.3e-4095.35hypothetical protein SDJN03_08216, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg11806 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11806 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11806 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11806-RACarg11806-RAmRNA