Carg11665 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11665
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 3302904 .. 3303395 (-)
RNA-Seq ExpressionCarg11665
SyntenyCarg11665
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATAGATGAAGAACATTGTGGGAATCTTAGCGAGTAGGGAGATTTCCACCAACACAAAAAAGATAACCGAGTCTCAACGTAGACTTCATTCCTGGTAACTTTACACAACGCCGTGTTCCATAATTTTTTCTCTTTAAATAATGATAACCTGCACTTTCTAATACTAACCATGTATTACGATGGATATTTTAGTGTGGAAGAATATACATTGAAGCACTGCTCAACTGTTCCAATTTTTCATTCCACTACTATACCACAGGGTATAATAGAATTTTTTCAGGGTGGTGATCTATTTTACTGCAGAAGGTAACATTTTCTTTACTGTAAAATAGTTTATGATTGGTCGATCGATATGATGATTCTATTTTGAATATACTTGCAGTGCTATATTGGAAGATCATCCAAAAGTATTCGAATGGATAACTTCATGCCAGCTTCCAGTGAGATCAATTATTAAATTTGATGAATCAAATTGGAAGTTCGTTCAGGCC

mRNA sequence

TTATAGATGAAGAACATTGTGGGAATCTTAGCGAGTAGGGAGATTTCCACCAACACAAAAAAGATAACCGAGTCTCAACGTAGACTTCATTCCTGTGCTATATTGGAAGATCATCCAAAAGTATTCGAATGGATAACTTCATGCCAGCTTCCAGTGAGATCAATTATTAAATTTGATGAATCAAATTGGAAGTTCGTTCAGGCC

Coding sequence (CDS)

ATGAAGAACATTGTGGGAATCTTAGCGAGTAGGGAGATTTCCACCAACACAAAAAAGATAACCGAGTCTCAACGTAGACTTCATTCCTGTGCTATATTGGAAGATCATCCAAAAGTATTCGAATGGATAACTTCATGCCAGCTTCCAGTGAGATCAATTATTAAATTTGATGAATCAAATTGGAAGTTCGTTCAGGCC

Protein sequence

MKNIVGILASREISTNTKKITESQRRLHSCAILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA
Homology
BLAST of Carg11665 vs. NCBI nr
Match: KAG7035247.1 (hypothetical protein SDJN02_02042, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.2e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MKNIVGILASREISTNTKKITESQRRLHSCAILEDHPKVFEWITSCQLPVRSIIKFDESN 60
          MKNIVGILASREISTNTKKITESQRRLHSCAILEDHPKVFEWITSCQLPVRSIIKFDESN
Sbjct: 1  MKNIVGILASREISTNTKKITESQRRLHSCAILEDHPKVFEWITSCQLPVRSIIKFDESN 60

Query: 61 WKFVQA 67
          WKFVQA
Sbjct: 61 WKFVQA 66

BLAST of Carg11665 vs. NCBI nr
Match: XP_022947738.1 (uncharacterized protein LOC111451512 [Cucurbita moschata] >XP_022947739.1 uncharacterized protein LOC111451512 [Cucurbita moschata])

HSP 1 Score: 116.7 bits (291), Expect = 7.6e-23
Identity = 65/104 (62.50%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1   MKNIVGILASREISTNTKKITESQRRLHSC------------------------------ 60
           MKNIVGILASREISTNTKKI ESQRRLHSC                              
Sbjct: 1   MKNIVGILASREISTNTKKILESQRRLHSCVEEYTLKHCSTVPIFHSTTIPQGIIEFFQG 60

Query: 61  --------AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 67
                   AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA
Sbjct: 61  GDLFYCRSAILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 104

BLAST of Carg11665 vs. NCBI nr
Match: XP_023534521.1 (uncharacterized protein LOC111796064 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 64/104 (61.54%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1   MKNIVGILASREISTNTKKITESQRRLHSC------------------------------ 60
           MKNIVGILASREISTNTKKITESQRRLHSC                              
Sbjct: 1   MKNIVGILASREISTNTKKITESQRRLHSCVEEYTLKHCSTVTIFHSTTIPQGIIEFFQG 60

Query: 61  --------AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 67
                   AILED+PKVFEWITSCQLPVRSIIKFDESNW FVQA
Sbjct: 61  GDLFYCRSAILEDNPKVFEWITSCQLPVRSIIKFDESNWNFVQA 104

BLAST of Carg11665 vs. NCBI nr
Match: XP_023007549.1 (uncharacterized protein LOC111500010 [Cucurbita maxima] >XP_023007550.1 uncharacterized protein LOC111500010 [Cucurbita maxima])

HSP 1 Score: 111.3 bits (277), Expect = 3.2e-21
Identity = 62/104 (59.62%), Postives = 64/104 (61.54%), Query Frame = 0

Query: 1   MKNIVGILASREISTNTKKITESQRRLHSC------------------------------ 60
           MKNIVGILASREISTNTK ITESQRRLHSC                              
Sbjct: 1   MKNIVGILASREISTNTKMITESQRRLHSCVEEYTLKHCSTVTIFHSTTIPQGIIEFFQG 60

Query: 61  --------AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 67
                   AILED+PKVFEWITSCQLPVRSII+FDESNW FVQA
Sbjct: 61  GDLCYCRSAILEDYPKVFEWITSCQLPVRSIIRFDESNWNFVQA 104

BLAST of Carg11665 vs. ExPASy TrEMBL
Match: A0A6J1G7S8 (uncharacterized protein LOC111451512 OS=Cucurbita moschata OX=3662 GN=LOC111451512 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.7e-23
Identity = 65/104 (62.50%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1   MKNIVGILASREISTNTKKITESQRRLHSC------------------------------ 60
           MKNIVGILASREISTNTKKI ESQRRLHSC                              
Sbjct: 1   MKNIVGILASREISTNTKKILESQRRLHSCVEEYTLKHCSTVPIFHSTTIPQGIIEFFQG 60

Query: 61  --------AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 67
                   AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA
Sbjct: 61  GDLFYCRSAILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 104

BLAST of Carg11665 vs. ExPASy TrEMBL
Match: A0A6J1L591 (uncharacterized protein LOC111500010 OS=Cucurbita maxima OX=3661 GN=LOC111500010 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 62/104 (59.62%), Postives = 64/104 (61.54%), Query Frame = 0

Query: 1   MKNIVGILASREISTNTKKITESQRRLHSC------------------------------ 60
           MKNIVGILASREISTNTK ITESQRRLHSC                              
Sbjct: 1   MKNIVGILASREISTNTKMITESQRRLHSCVEEYTLKHCSTVTIFHSTTIPQGIIEFFQG 60

Query: 61  --------AILEDHPKVFEWITSCQLPVRSIIKFDESNWKFVQA 67
                   AILED+PKVFEWITSCQLPVRSII+FDESNW FVQA
Sbjct: 61  GDLCYCRSAILEDYPKVFEWITSCQLPVRSIIRFDESNWNFVQA 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7035247.13.2e-29100.00hypothetical protein SDJN02_02042, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022947738.17.6e-2362.50uncharacterized protein LOC111451512 [Cucurbita moschata] >XP_022947739.1 unchar... [more]
XP_023534521.13.8e-2261.54uncharacterized protein LOC111796064 [Cucurbita pepo subsp. pepo][more]
XP_023007549.13.2e-2159.62uncharacterized protein LOC111500010 [Cucurbita maxima] >XP_023007550.1 uncharac... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G7S83.7e-2362.50uncharacterized protein LOC111451512 OS=Cucurbita moschata OX=3662 GN=LOC1114515... [more]
A0A6J1L5911.5e-2159.62uncharacterized protein LOC111500010 OS=Cucurbita maxima OX=3661 GN=LOC111500010... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11665-RACarg11665-RAmRNA