Carg11603 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11603
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	stress-associated endoplasmic reticulum protein 2-like
Location	Carg_Chr17: 9976204 .. 9977502 (+)
RNA-Seq Expression	Carg11603
Synteny	Carg11603

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGTCCTCTGTATCAGAGCGGTGACCGGAGAGAAGACTCGCCGGCCGGCCAGGAGGAGAATCGATCACTGCAATTCTTCTAATCCCCTCGGCGCTTATTTGTGTCTCCGGCTACCTAATTTCCTGCCAAAATCATGGTAATTTTCATTTTCTTTTGGATTCCATCTCAGATTACAACTGCGATGGATTATTGATCCGTTTCGCCTTTATAGGGCTCTTTTGTGTGACTTTTGGCTACTTGCCTTCATTGCATCGCACCGTAATTAAGTGGTTAAAATATTTGTATTTTGGTCTTTAGACATTGTTGGACATGAGTAATTTGTATTCCCCAAATCTCTTGATTTGAAATGCACTTTAATTGGTCTAAATCTCTCGATGAAAACTAACTGAGAAACACTAGTAGTCGTGAATAGAAATATTGGGCATTCAAATTGTTAAATATTGCTTCCTTTTTCGAGTTTAAGTTTCACGAAATGAACTTTTAGCAGAAGAATAATTGGAAACAAGTACTCTCTCTTGTACCGCTAATCTAAGTTGAGGGTCGTTTTTAGCAAGTTTCACTTTTAAATTTTAGTTCGTGTTAACCTGAGATTTTTGGTTGGACATGTGTAAGGGGGCATTGTTTTAAATGAAAAAAGAATCTGAGCTTATGTTCATTTTGTTTTGGAATGTTAGTGTTACTGAATTGAGTATATACTAAATTATGATATGTTAGTAAATTTAAGCTTCTGCTTTTGTAGACAACATCAAGGCGCCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAGTAATATCAGAAAGAGAGGAGCTGTTCCAGAGACGACCCTTAAGAAGGGGAAGGATTATCCTGTGGGGCCCTTGTTGCTTGGATTCTTCGTATTTGTTGTTATTGGATCATGTAAGACTAATCCTTTTTATTATTTATATAATTTCCGCTACTATATTGTTTCTGAGCTTTGTTTATTCAACAGCTCTCTTCCAGATGATCAGGACAGCAACAGGCGGAGGCATGGCTTGATGTGATGATCTGATTTTTGGATGCTGTTACAGATTCATGCTGTCCTCTATTTCCTTTATGATGAACACAAAAGAATTTTGACAATAGAATTGTTACAGTTCTCTTTTGTAACAATTGCTTGTAATCTAATATAGTTTCACTTACCCGATTAAGAGTTTGAACGTTTGAATTTTATCTTATTTCACCGGTTGAACTATTTTCTTATACAATGAAAATGGGTGGATGGCAGGACAAGAGGAGGAAGAAAACAAAGAACAAAAAAAGTAGAATAGAAATAATAGT

mRNA sequence

AATGTCCTCTGTATCAGAGCGGTGACCGGAGAGAAGACTCGCCGGCCGGCCAGGAGGAGAATCGATCACTGCAATTCTTCTAATCCCCTCGGCGCTTATTTGTGTCTCCGGCTACCTAATTTCCTGCCAAAATCATGACAACATCAAGGCGCCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAGTAATATCAGAAAGAGAGGAGCTGTTCCAGAGACGACCCTTAAGAAGGGGAAGGATTATCCTGTGGGGCCCTTGTTGCTTGGATTCTTCGTATTTGTTGTTATTGGATCATCTCTCTTCCAGATGATCAGGACAGCAACAGGCGGAGGCATGGCTTGATGTGATGATCTGATTTTTGGATGCTGTTACAGATTCATGCTGTCCTCTATTTCCTTTATGATGAACACAAAAGAATTTTGACAATAGAATTGTTACAGTTCTCTTTTGTAACAATTGCTTGTAATCTAATATAGTTTCACTTACCCGATTAAGAGTTTGAACGTTTGAATTTTATCTTATTTCACCGGTTGAACTATTTTCTTATACAATGAAAATGGGTGGATGGCAGGACAAGAGGAGGAAGAAAACAAAGAACAAAAAAAGTAGAATAGAAATAATAGT

Coding sequence (CDS)

ATGACAACATCAAGGCGCCTTGCAGACCGGAAGGTGGTGAGGTTCGAGAGTAATATCAGAAAGAGAGGAGCTGTTCCAGAGACGACCCTTAAGAAGGGGAAGGATTATCCTGTGGGGCCCTTGTTGCTTGGATTCTTCGTATTTGTTGTTATTGGATCATCTCTCTTCCAGATGATCAGGACAGCAACAGGCGGAGGCATGGCTTGA

Protein sequence

MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIRTATGGGMA

Homology

[Close]

BLAST of Carg11603 vs. NCBI nr
Match: KAG7014659.1 (Stress-associated endoplasmic reticulum protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR
Sbjct: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. NCBI nr
Match: XP_023540285.1 (stress-associated endoplasmic reticulum protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. NCBI nr
Match: XP_022953939.1 (probable stress-associated endoplasmic reticulum protein [Cucurbita moschata])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKVVRFESNIRKRGAVPE TLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR
Sbjct: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. NCBI nr
Match: KAG6576141.1 (Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR
Sbjct: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60

Query: 61 TATGGGMA 69
          TATGG MA
Sbjct: 61 TATGGDMA 68

[Close]

BLAST of Carg11603 vs. NCBI nr
Match: XP_022155455.1 (stress-associated endoplasmic reticulum protein 2-like [Momordica charantia])

HSP 1 Score: 127.5 bits (319), Expect = 4.4e-26
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKVVRFE NI KRGAVPETT+KKGKDYPVGPLLLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVVRFERNITKRGAVPETTVKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. ExPASy Swiss-Prot
Match: Q3T073 (Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 6  RLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIRTATGG 65
          R+A+ K      NI +RG V +T   + + YPVGP LL  FVFVV GS++FQ+I++   G
Sbjct: 8  RMANEK---HSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of Carg11603 vs. ExPASy Swiss-Prot
Match: Q8N6R1 (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SERP2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 6  RLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIRTATGG 65
          R+A+ K      NI +RG V +T   + + YPVGP LL  FVFVV GS++FQ+I++   G
Sbjct: 8  RMANEK---HSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of Carg11603 vs. ExPASy Swiss-Prot
Match: Q6TAW2 (Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Serp2 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 6  RLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIRTATGG 65
          R+A+ K      NI +RG V +T   + + YPVGP LL  FVFVV GS++FQ+I++   G
Sbjct: 8  RMANEK---HSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]

BLAST of Carg11603 vs. ExPASy TrEMBL
Match: A0A6J1GRD3 (probable stress-associated endoplasmic reticulum protein OS=Cucurbita moschata OX=3662 GN=LOC111456347 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.7e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKVVRFESNIRKRGAVPE TLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR
Sbjct: 1  MTTSRRLADRKVVRFESNIRKRGAVPEKTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. ExPASy TrEMBL
Match: A0A6J1DMG9 (stress-associated endoplasmic reticulum protein 2-like OS=Momordica charantia OX=3673 GN=LOC111022594 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-26
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKVVRFE NI KRGAVPETT+KKGKDYPVGPLLLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVVRFERNITKRGAVPETTVKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. ExPASy TrEMBL
Match: A0A6J1IQU2 (stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111479167 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRGAVPETT KKGKDYPVGPLLLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. ExPASy TrEMBL
Match: A0A6J1GW87 (stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111458060 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRGAVPETT KKGKDYPVGPLLLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TATGGGMA
Sbjct: 61 TATGGGMA 68

[Close]

BLAST of Carg11603 vs. ExPASy TrEMBL
Match: A0A6J1AFB7 (stress-associated endoplasmic reticulum protein 2-like OS=Herrania umbratica OX=108875 GN=LOC110417496 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.0e-25
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTSRRLADRKV RFE NI KRGAVPETT KKGKDYPVGPLLLGFF+FVVIGSSLFQ+IR
Sbjct: 1  MTTSRRLADRKVERFEKNITKRGAVPETTTKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]

BLAST of Carg11603 vs. TAIR 10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-26
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTS+RLADRK+ +F+ NI KRG VPETT KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

[Close]

BLAST of Carg11603 vs. TAIR 10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-26
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MTTSRRLADRKVVRFESNIRKRGAVPETTLKKGKDYPVGPLLLGFFVFVVIGSSLFQMIR 60
          MTTS+RLADRK+ +F+ NI KRG VPETT KKGKDYPVGP+LLGFFVFVVIGSSLFQ+IR
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 TATGGGMA 69
          TAT GGMA
Sbjct: 61 TATSGGMA 68

The following BLAST results are available for this feature:

BLAST of Carg11603 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014659.1	3.6e-28	100.00	Stress-associated endoplasmic reticulum protein 2 [Cucurbita argyrosperma subsp....	[more]
XP_023540285.1	1.1e-27	98.53	stress-associated endoplasmic reticulum protein 2-like [Cucurbita pepo subsp. pe...	[more]
XP_022953939.1	1.8e-27	98.53	probable stress-associated endoplasmic reticulum protein [Cucurbita moschata]	[more]
KAG6576141.1	2.4e-27	98.53	Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosper...	[more]
XP_022155455.1	4.4e-26	94.12	stress-associated endoplasmic reticulum protein 2-like [Momordica charantia]	[more]

BLAST of Carg11603 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T073	2.0e-05	45.00	Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2...	[more]
Q8N6R1	2.0e-05	45.00	Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SER...	[more]
Q6TAW2	2.0e-05	45.00	Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Se...	[more]

BLAST of Carg11603 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRD3	8.7e-28	98.53	probable stress-associated endoplasmic reticulum protein OS=Cucurbita moschata O...	[more]
A0A6J1DMG9	2.1e-26	94.12	stress-associated endoplasmic reticulum protein 2-like OS=Momordica charantia OX...	[more]
A0A6J1IQU2	1.8e-25	92.65	stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1GW87	1.8e-25	92.65	stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita moschata OX=...	[more]
A0A6J1AFB7	9.0e-25	89.71	stress-associated endoplasmic reticulum protein 2-like OS=Herrania umbratica OX=...	[more]

BLAST of Carg11603 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27350.1	2.1e-26	82.35	Ribosome associated membrane protein RAMP4	[more]
AT1G27330.1	2.1e-26	82.35	Ribosome associated membrane protein RAMP4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010580	Stress-associated endoplasmic reticulum protein	PFAM	PF06624	RAMP4	coord: 5..61 e-value: 2.1E-22 score: 78.9
IPR010580	Stress-associated endoplasmic reticulum protein	PANTHER	PTHR15601	STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4	coord: 1..68
None	No IPR available	PANTHER	PTHR15601:SF26	STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11603-RA	Carg11603-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0015031	protein transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane