Carg11249 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11249
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transmembrane 9 superfamily member
Location	Carg_Chr14: 5652734 .. 5653021 (-)
RNA-Seq Expression	Carg11249
Synteny	Carg11249

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCGATTTTGGAATTCGATGTCGCCGGGATCTTCCTCAAAATCGCCATGTTCGTCTTTGTTCAGGTTCTTGTGTATTTGATCCTCTCCAAATCATCCAATCTCTTCTCCAACGACAAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTTAGTATTCGTCGGTTGCTAGCAGCTCTTTCCGATCTTCCACCCGGCGGTGAGCTTTCTCCGTCGTCGAGTGTTCTAACTCCCTCGTCTGTTCGTCGGGAGCGTTCCGACGACAGTGGCAGGTTTTAA

mRNA sequence

ATGATCTCGATTTTGGAATTCGATGTCGCCGGGATCTTCCTCAAAATCGCCATGTTCGTCTTTGTTCAGGTTCTTGTGTATTTGATCCTCTCCAAATCATCCAATCTCTTCTCCAACGACAAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTTAGTATTCGTCGGTTGCTAGCAGCTCTTTCCGATCTTCCACCCGGCGGTGAGCTTTCTCCGTCGTCGAGTGTTCTAACTCCCTCGTCTGTTCGTCGGGAGCGTTCCGACGACAGTGGCAGGTTTTAA

Coding sequence (CDS)

ATGATCTCGATTTTGGAATTCGATGTCGCCGGGATCTTCCTCAAAATCGCCATGTTCGTCTTTGTTCAGGTTCTTGTGTATTTGATCCTCTCCAAATCATCCAATCTCTTCTCCAACGACAAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTTAGTATTCGTCGGTTGCTAGCAGCTCTTTCCGATCTTCCACCCGGCGGTGAGCTTTCTCCGTCGTCGAGTGTTCTAACTCCCTCGTCTGTTCGTCGGGAGCGTTCCGACGACAGTGGCAGGTTTTAA

Protein sequence

MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPPGGELSPSSSVLTPSSVRRERSDDSGRF

Homology

[Close]

BLAST of Carg11249 vs. NCBI nr
Match: KAG7018107.1 (hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.5 bits (428), Expect = 1.4e-38
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL
Sbjct: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGRF 96
          AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGRF
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGRF 95

[Close]

BLAST of Carg11249 vs. NCBI nr
Match: KAG6581607.1 (hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          MISILE+DVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL
Sbjct: 1  MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDS 93
          AALSDLPPGGELSPSSSVLTPSSVRRERSDDS
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDS 92

[Close]

BLAST of Carg11249 vs. NCBI nr
Match: XP_038905322.1 (uncharacterized protein LOC120091388 [Benincasa hispida])

HSP 1 Score: 133.7 bits (335), Expect = 8.6e-28
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          M  ILE D   +F+KIAMF FVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MTPILESDTCEMFVKIAMFAFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGRF 96
          AALSDLPPGGE+SP+  V TPSS RR+ SDD GRF
Sbjct: 61 AALSDLPPGGEISPTPRVQTPSSFRRDHSDDGGRF 95

[Close]

BLAST of Carg11249 vs. NCBI nr
Match: XP_011651805.2 (uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          M  I + D   +F++IAMFVF+Q+LVYLILSKSSNLFSND+K+RSLSFKPARSVSIRR L
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGR 95
          AALSDLPPGGELSPS+ V TPSS RR+RSDD GR
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR 94

[Close]

BLAST of Carg11249 vs. NCBI nr
Match: KAG6606858.1 (hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036564.1 hypothetical protein SDJN02_00183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          M+ ILE D    F+KIAMF+ VQ+LVY ILS+SS+LFS D+KL+SLSFKPARSVSIRR L
Sbjct: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGRF 96
          AALSD+P GGELSPSS V TPS + RE SDD GRF
Sbjct: 61 AALSDMPSGGELSPSSRVRTPSPIHREHSDDGGRF 95

[Close]

BLAST of Carg11249 vs. ExPASy TrEMBL
Match: A0A5A7UC63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00310 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.1e-23
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          M  I E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDD 92
          AALSDLPPGGELS       PSSVRR RSDD
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDD 84

[Close]

BLAST of Carg11249 vs. ExPASy TrEMBL
Match: A0A1S3CFW1 (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.1e-23
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          M  I E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDD 92
          AALSDLPPGGELS       PSSVRR RSDD
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDD 84

[Close]

BLAST of Carg11249 vs. ExPASy TrEMBL
Match: A0A6J0PQA3 (uncharacterized protein LOC109506509 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC109506509 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 12 IFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPPGGE 71
          + LK+AMFV VQ LVYLILSKSSN+FS   K RSLSF+  RSVSIRR+LAALSDLPPGGE
Sbjct: 14 VLLKVAMFVLVQALVYLILSKSSNIFST-TKTRSLSFRTVRSVSIRRMLAALSDLPPGGE 73

Query: 72 LSPSSSVLTPSSVRRERSD 91
           SPSSSV   SS   +  D
Sbjct: 74 PSPSSSVSPASSPSSDHKD 91

[Close]

BLAST of Carg11249 vs. ExPASy TrEMBL
Match: M0RJ50 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 9  VAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPP 68
          V+ + +K+ +F  VQ LVYLIL+KSSN+FS ++KLRSLSF+PARSVS+RRLLA LSD+PP
Sbjct: 4  VSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPP 63

Query: 69 GGELSPSSSVLTPSSVRRERSDDS 93
          GGE SPSSS        R  +DDS
Sbjct: 64 GGETSPSSS-------SRSLADDS 80

[Close]

BLAST of Carg11249 vs. ExPASy TrEMBL
Match: A0A444DLD0 (Transmembrane 9 superfamily member OS=Ensete ventricosum OX=4639 GN=GW17_00038188 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 9  VAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPP 68
          V+ + +K+ +F  VQ LVYLIL+KSSN+FS ++KLRSLSF+PARSVS+RRLLA LSD+PP
Sbjct: 8  VSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPP 67

Query: 69 GGELSPSSSVLTPSSVRRERSDDS 93
          GGE SPSSS        R  +DDS
Sbjct: 68 GGETSPSSS-------SRSLADDS 84

[Close]

BLAST of Carg11249 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 5  LEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKL-RSLSFKPARSVSIRRLLAAL 64
          +E    G+ +K+++F  +Q LVYLILSKSS++FS  K + R+ SF+ ARS+SIRR+LA L
Sbjct: 1  MEGSFEGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVL 60

Query: 65 SDLPPGGELSPS-------SSVLTPSSV 85
           D+P GGE+SPS       SS+ +PS +
Sbjct: 61 QDMPAGGEMSPSAMGPSLASSLSSPSEI 88

[Close]

BLAST of Carg11249 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 5.4e-12
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 12 IFLKIAMFVFVQVLVYLILSKSSNLFSNDKKL-RSLSFKPARSVSIRRLLAALSDLPPGG 71
          + +K+A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR+LAAL D+P G 
Sbjct: 8  MLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPAGD 67

Query: 72 ELSPSSSVLTPSS 84
          ++SPSS+  + SS
Sbjct: 68 DMSPSSNGSSSSS 80

The following BLAST results are available for this feature:

BLAST of Carg11249 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018107.1	1.4e-38	100.00	hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581607.1	3.0e-36	98.91	hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038905322.1	8.6e-28	77.89	uncharacterized protein LOC120091388 [Benincasa hispida]	[more]
XP_011651805.2	1.9e-27	76.60	uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
KAG6606858.1	1.2e-24	71.58	hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg11249 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg11249 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC63	4.1e-23	76.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFW1	4.1e-23	76.92	uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=...	[more]
A0A6J0PQA3	4.1e-15	69.62	uncharacterized protein LOC109506509 OS=Elaeis guineensis var. tenera OX=51953 G...	[more]
M0RJ50	4.1e-15	61.90	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
A0A444DLD0	4.1e-15	61.90	Transmembrane 9 superfamily member OS=Ensete ventricosum OX=4639 GN=GW17_0003818...	[more]

BLAST of Carg11249 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05575.1	1.3e-13	48.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]
AT2G31945.1	5.4e-12	54.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..95
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 8..92
None	No IPR available	PANTHER	PTHR34268:SF8	OS01G0321850 PROTEIN	coord: 8..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11249-RA	Carg11249-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0098588	bounding membrane of organelle
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle