Carg11207 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11207
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein TAPETUM DETERMINANT 1-like
LocationCarg_Chr14: 5336595 .. 5337037 (-)
RNA-Seq ExpressionCarg11207
SyntenyCarg11207
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCTTCCTCAAGTTTCTCACACCTCTTCTCTTTCTCTCTCTCCTTTGGACGGGTATAATTATAAAATTTCAATTCCATTTCATGAAATCATAAAATTTAAATTAATCGAGTTGAATATTGTTTCAGGAAATTGTCAATGTGAATCGAACAACATACAAATCAATCAAAGGAGGACTGGTTTTCAGATCTATGGAATGACACAATGGAAGGTGACAATAAGCAACAACTGTATATGTTCTCAGTCCAACGTAAAATTAGATTGCAGAGGATTTCAAATCTTTGAAAGCATCGATCCTTCCATCTTAGCTATTTTCGACACCGAGTGTTTGGTTAACGACGGTCGCCCAATTTTCAATTTCAATCCCATCAACTACACTTATGCACGAGACCCTAAATTCAAGTTCGACCTGATCTCCTCCCAAGTTGCTTGTTCTTAA

mRNA sequence

ATGGCCATCTTCCTCAAGTTTCTCACACCTCTTCTCTTTCTCTCTCTCCTTTGGACGGGAAATTGTCAATGTGAATCGAACAACATACAAATCAATCAAAGGAGGACTGGTTTTCAGATCTATGGAATGACACAATGGAAGGTGACAATAAGCAACAACTGTATATGTTCTCAGTCCAACGTAAAATTAGATTGCAGAGGATTTCAAATCTTTGAAAGCATCGATCCTTCCATCTTAGCTATTTTCGACACCGAGTGTTTGGTTAACGACGGTCGCCCAATTTTCAATTTCAATCCCATCAACTACACTTATGCACGAGACCCTAAATTCAAGTTCGACCTGATCTCCTCCCAAGTTGCTTGTTCTTAA

Coding sequence (CDS)

ATGGCCATCTTCCTCAAGTTTCTCACACCTCTTCTCTTTCTCTCTCTCCTTTGGACGGGAAATTGTCAATGTGAATCGAACAACATACAAATCAATCAAAGGAGGACTGGTTTTCAGATCTATGGAATGACACAATGGAAGGTGACAATAAGCAACAACTGTATATGTTCTCAGTCCAACGTAAAATTAGATTGCAGAGGATTTCAAATCTTTGAAAGCATCGATCCTTCCATCTTAGCTATTTTCGACACCGAGTGTTTGGTTAACGACGGTCGCCCAATTTTCAATTTCAATCCCATCAACTACACTTATGCACGAGACCCTAAATTCAAGTTCGACCTGATCTCCTCCCAAGTTGCTTGTTCTTAA

Protein sequence

MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSNVKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVACS
Homology
BLAST of Carg11207 vs. NCBI nr
Match: KAG7018068.1 (hypothetical protein SDJN02_19934, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.2 bits (661), Expect = 1.8e-65
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN
Sbjct: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
           VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA
Sbjct: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Carg11207 vs. NCBI nr
Match: XP_038881121.1 (uncharacterized protein At1g05835-like [Benincasa hispida])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 88/122 (72.13%), Postives = 104/122 (85.25%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           MAIF+K +T LL LSL+ TGNCQC  NNI I+QR TGFQI+GMT+WKVTISNNC CSQS 
Sbjct: 1   MAIFVKLVTALLVLSLVSTGNCQCILNNITISQRMTGFQIHGMTEWKVTISNNCPCSQSE 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
           VK+DC+GFQ  ESIDPSILA+FDTECLVN+G PIFN NPI ++YA+DP+F F  ISSQ++
Sbjct: 61  VKIDCKGFQTTESIDPSILAVFDTECLVNNGLPIFNSNPITFSYAQDPQFNFKPISSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Carg11207 vs. NCBI nr
Match: KAG7026828.1 (Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 86/122 (70.49%), Postives = 102/122 (83.61%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           MA FLK    LLF+SLL+ GNCQC SN+I I+Q+ TGFQI+GMT+W VTISNNC+CSQS 
Sbjct: 1   MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSE 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
           VKLDC+GFQ  +SIDPSILA+ DTECLVN+G PIF  NP+ +TYA+DPKF F LISSQ+A
Sbjct: 61  VKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPVIFTYAQDPKFDFKLISSQIA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Carg11207 vs. NCBI nr
Match: XP_023518832.1 (uncharacterized protein LOC111782230 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 82/122 (67.21%), Postives = 97/122 (79.51%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           MA F      LLF+SLL  GN QC  N+I I+Q+ TGFQI+GMT+W VTISNNC+CSQS 
Sbjct: 1   MAPFANLFAALLFVSLLCKGNFQCVPNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSE 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
           VKLDCRGFQ  +S+DPSILA+ DTECLVN+G PIF  NP+ +TYA+DPKF F LISSQ+A
Sbjct: 61  VKLDCRGFQTTKSVDPSILAVTDTECLVNNGLPIFKSNPVIFTYAQDPKFDFKLISSQIA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Carg11207 vs. NCBI nr
Match: XP_031742370.1 (uncharacterized protein At1g05835-like [Cucumis sativus] >KGN48771.1 hypothetical protein Csa_003478 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-39
Identity = 81/122 (66.39%), Postives = 98/122 (80.33%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           M IF K L  LL LSL+ TGNCQC  NNI+I+Q  TGFQI+GMT+WKVTI+NNCICSQS+
Sbjct: 1   MPIFPKLLAALLVLSLISTGNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSD 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
           +KLDC+GF    SIDPSILAI D+ECLVN+G+PIFN  PI + YA+ PKF F  +SSQ++
Sbjct: 61  LKLDCKGFATTLSIDPSILAISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Carg11207 vs. ExPASy TrEMBL
Match: A0A0A0KLZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500630 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.0e-40
Identity = 81/122 (66.39%), Postives = 98/122 (80.33%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           M IF K L  LL LSL+ TGNCQC  NNI+I+Q  TGFQI+GMT+WKVTI+NNCICSQS+
Sbjct: 1   MPIFPKLLAALLVLSLISTGNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSD 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
           +KLDC+GF    SIDPSILAI D+ECLVN+G+PIFN  PI + YA+ PKF F  +SSQ++
Sbjct: 61  LKLDCKGFATTLSIDPSILAISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Carg11207 vs. ExPASy TrEMBL
Match: A0A6J1KP98 (protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497464 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 81/122 (66.39%), Postives = 94/122 (77.05%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           MA F K    LLF+SLL  GNCQC SN+I I Q  +GFQI+GMT+W VTISN C+CSQS 
Sbjct: 1   MAPFAKLFAALLFVSLLHKGNCQCVSNDIAIRQTMSGFQIHGMTEWNVTISNICLCSQSE 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
           VKLDCRGFQ  +SIDPS+LA+ D+ECLVN+G PIF  N I +TYA DPKF F LISSQ+ 
Sbjct: 61  VKLDCRGFQTTKSIDPSVLAVTDSECLVNNGLPIFKSNSITFTYAHDPKFDFKLISSQIN 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Carg11207 vs. ExPASy TrEMBL
Match: A0A5D3CMA8 (Protein TAPETUM DETERMINANT 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002630 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 79/122 (64.75%), Postives = 96/122 (78.69%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           MAI +K L  LL LS + TGNCQC  NNI I+Q+ TGFQI+GMT+W VTI+NNCICSQS+
Sbjct: 1   MAISVKLLAALLVLSFISTGNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSD 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
           +KLDC+GF    SIDPSIL+I D ECLVN+G+PIFN  PI + YA+ PKF F  ISSQ++
Sbjct: 61  LKLDCKGFATTLSIDPSILSISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Carg11207 vs. ExPASy TrEMBL
Match: A0A1S3B1L8 (protein TAPETUM DETERMINANT 1-like OS=Cucumis melo OX=3656 GN=LOC103484995 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 79/122 (64.75%), Postives = 96/122 (78.69%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           MAI +K L  LL LS + TGNCQC  NNI I+Q+ TGFQI+GMT+W VTI+NNCICSQS+
Sbjct: 1   MAISVKLLAALLVLSFISTGNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSD 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
           +KLDC+GF    SIDPSIL+I D ECLVN+G+PIFN  PI + YA+ PKF F  ISSQ++
Sbjct: 61  LKLDCKGFATTLSIDPSILSISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Carg11207 vs. ExPASy TrEMBL
Match: A0A6J1HGA0 (uncharacterized protein At1g05835-like OS=Cucurbita moschata OX=3662 GN=LOC111463301 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.4e-36
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           MA   K    LLF+S L   N QC  +NI I Q  TGFQI+GMT+W  T+SNNC+CSQS 
Sbjct: 1   MAPSAKLFAALLFVSFLSKENSQCFLSNITIRQSMTGFQIHGMTEWNTTVSNNCLCSQSE 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
           VKLDCRGFQ  +SIDP ILAI DTECLVN+G PIFN  PI +TYA++P+F F  ISSQ+A
Sbjct: 61  VKLDCRGFQTTKSIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

BLAST of Carg11207 vs. TAIR 10
Match: AT4G32090.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-13
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 0

Query: 1   MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
           MA  LK    +L LS++  G C C    IQI   RTG +I G  +WKVT+ N C C Q +
Sbjct: 1   MAFALKCFVVVLLLSMVSHGLCLCTFGKIQIGAVRTGREIGGQPEWKVTVINTCNCFQKH 60

Query: 61  VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQV 120
           V L C GF   + + P +L      CL+  G  +       +TYA  P + F  + S+V
Sbjct: 61  VTLSCGGFAPAKPVKPLLLQPQGNTCLMIKGAALPAGATAQFTYAGQP-YIFRPVGSKV 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7018068.11.8e-65100.00hypothetical protein SDJN02_19934, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038881121.11.3e-4472.13uncharacterized protein At1g05835-like [Benincasa hispida][more]
KAG7026828.11.1e-4370.49Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosper... [more]
XP_023518832.12.0e-4067.21uncharacterized protein LOC111782230 [Cucurbita pepo subsp. pepo][more]
XP_031742370.11.7e-3966.39uncharacterized protein At1g05835-like [Cucumis sativus] >KGN48771.1 hypothetica... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLZ68.0e-4066.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500630 PE=4 SV=1[more]
A0A6J1KP981.8e-3966.39protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497464 P... [more]
A0A5D3CMA88.8e-3964.75Protein TAPETUM DETERMINANT 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3B1L88.8e-3964.75protein TAPETUM DETERMINANT 1-like OS=Cucumis melo OX=3656 GN=LOC103484995 PE=4 ... [more]
A0A6J1HGA05.4e-3663.11uncharacterized protein At1g05835-like OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
Match NameE-valueIdentityDescription
AT4G32090.12.2e-1336.13Beta-1,3-N-Acetylglucosaminyltransferase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040361Tapetum determinant 1PANTHERPTHR33184PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATEDcoord: 1..122
NoneNo IPR availablePANTHERPTHR33184:SF44BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEINcoord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11207-RACarg11207-RAmRNA