Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCTTCCTCAAGTTTCTCACACCTCTTCTCTTTCTCTCTCTCCTTTGGACGGGTATAATTATAAAATTTCAATTCCATTTCATGAAATCATAAAATTTAAATTAATCGAGTTGAATATTGTTTCAGGAAATTGTCAATGTGAATCGAACAACATACAAATCAATCAAAGGAGGACTGGTTTTCAGATCTATGGAATGACACAATGGAAGGTGACAATAAGCAACAACTGTATATGTTCTCAGTCCAACGTAAAATTAGATTGCAGAGGATTTCAAATCTTTGAAAGCATCGATCCTTCCATCTTAGCTATTTTCGACACCGAGTGTTTGGTTAACGACGGTCGCCCAATTTTCAATTTCAATCCCATCAACTACACTTATGCACGAGACCCTAAATTCAAGTTCGACCTGATCTCCTCCCAAGTTGCTTGTTCTTAA
mRNA sequence
ATGGCCATCTTCCTCAAGTTTCTCACACCTCTTCTCTTTCTCTCTCTCCTTTGGACGGGAAATTGTCAATGTGAATCGAACAACATACAAATCAATCAAAGGAGGACTGGTTTTCAGATCTATGGAATGACACAATGGAAGGTGACAATAAGCAACAACTGTATATGTTCTCAGTCCAACGTAAAATTAGATTGCAGAGGATTTCAAATCTTTGAAAGCATCGATCCTTCCATCTTAGCTATTTTCGACACCGAGTGTTTGGTTAACGACGGTCGCCCAATTTTCAATTTCAATCCCATCAACTACACTTATGCACGAGACCCTAAATTCAAGTTCGACCTGATCTCCTCCCAAGTTGCTTGTTCTTAA
Coding sequence (CDS)
ATGGCCATCTTCCTCAAGTTTCTCACACCTCTTCTCTTTCTCTCTCTCCTTTGGACGGGAAATTGTCAATGTGAATCGAACAACATACAAATCAATCAAAGGAGGACTGGTTTTCAGATCTATGGAATGACACAATGGAAGGTGACAATAAGCAACAACTGTATATGTTCTCAGTCCAACGTAAAATTAGATTGCAGAGGATTTCAAATCTTTGAAAGCATCGATCCTTCCATCTTAGCTATTTTCGACACCGAGTGTTTGGTTAACGACGGTCGCCCAATTTTCAATTTCAATCCCATCAACTACACTTATGCACGAGACCCTAAATTCAAGTTCGACCTGATCTCCTCCCAAGTTGCTTGTTCTTAA
Protein sequence
MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSNVKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVACS
Homology
BLAST of Carg11207 vs. NCBI nr
Match:
KAG7018068.1 (hypothetical protein SDJN02_19934, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 259.2 bits (661), Expect = 1.8e-65
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN
Sbjct: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA
Sbjct: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
Query: 121 CS 123
CS
Sbjct: 121 CS 122
BLAST of Carg11207 vs. NCBI nr
Match:
XP_038881121.1 (uncharacterized protein At1g05835-like [Benincasa hispida])
HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 88/122 (72.13%), Postives = 104/122 (85.25%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
MAIF+K +T LL LSL+ TGNCQC NNI I+QR TGFQI+GMT+WKVTISNNC CSQS
Sbjct: 1 MAIFVKLVTALLVLSLVSTGNCQCILNNITISQRMTGFQIHGMTEWKVTISNNCPCSQSE 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
VK+DC+GFQ ESIDPSILA+FDTECLVN+G PIFN NPI ++YA+DP+F F ISSQ++
Sbjct: 61 VKIDCKGFQTTESIDPSILAVFDTECLVNNGLPIFNSNPITFSYAQDPQFNFKPISSQIS 120
Query: 121 CS 123
CS
Sbjct: 121 CS 122
BLAST of Carg11207 vs. NCBI nr
Match:
KAG7026828.1 (Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 86/122 (70.49%), Postives = 102/122 (83.61%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
MA FLK LLF+SLL+ GNCQC SN+I I+Q+ TGFQI+GMT+W VTISNNC+CSQS
Sbjct: 1 MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSE 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
VKLDC+GFQ +SIDPSILA+ DTECLVN+G PIF NP+ +TYA+DPKF F LISSQ+A
Sbjct: 61 VKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPVIFTYAQDPKFDFKLISSQIA 120
Query: 121 CS 123
CS
Sbjct: 121 CS 122
BLAST of Carg11207 vs. NCBI nr
Match:
XP_023518832.1 (uncharacterized protein LOC111782230 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 82/122 (67.21%), Postives = 97/122 (79.51%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
MA F LLF+SLL GN QC N+I I+Q+ TGFQI+GMT+W VTISNNC+CSQS
Sbjct: 1 MAPFANLFAALLFVSLLCKGNFQCVPNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSE 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
VKLDCRGFQ +S+DPSILA+ DTECLVN+G PIF NP+ +TYA+DPKF F LISSQ+A
Sbjct: 61 VKLDCRGFQTTKSVDPSILAVTDTECLVNNGLPIFKSNPVIFTYAQDPKFDFKLISSQIA 120
Query: 121 CS 123
CS
Sbjct: 121 CS 122
BLAST of Carg11207 vs. NCBI nr
Match:
XP_031742370.1 (uncharacterized protein At1g05835-like [Cucumis sativus] >KGN48771.1 hypothetical protein Csa_003478 [Cucumis sativus])
HSP 1 Score: 172.9 bits (437), Expect = 1.7e-39
Identity = 81/122 (66.39%), Postives = 98/122 (80.33%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
M IF K L LL LSL+ TGNCQC NNI+I+Q TGFQI+GMT+WKVTI+NNCICSQS+
Sbjct: 1 MPIFPKLLAALLVLSLISTGNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSD 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
+KLDC+GF SIDPSILAI D+ECLVN+G+PIFN PI + YA+ PKF F +SSQ++
Sbjct: 61 LKLDCKGFATTLSIDPSILAISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQIS 120
Query: 121 CS 123
CS
Sbjct: 121 CS 122
BLAST of Carg11207 vs. ExPASy TrEMBL
Match:
A0A0A0KLZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500630 PE=4 SV=1)
HSP 1 Score: 172.9 bits (437), Expect = 8.0e-40
Identity = 81/122 (66.39%), Postives = 98/122 (80.33%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
M IF K L LL LSL+ TGNCQC NNI+I+Q TGFQI+GMT+WKVTI+NNCICSQS+
Sbjct: 1 MPIFPKLLAALLVLSLISTGNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSD 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
+KLDC+GF SIDPSILAI D+ECLVN+G+PIFN PI + YA+ PKF F +SSQ++
Sbjct: 61 LKLDCKGFATTLSIDPSILAISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQIS 120
Query: 121 CS 123
CS
Sbjct: 121 CS 122
BLAST of Carg11207 vs. ExPASy TrEMBL
Match:
A0A6J1KP98 (protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497464 PE=4 SV=1)
HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 81/122 (66.39%), Postives = 94/122 (77.05%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
MA F K LLF+SLL GNCQC SN+I I Q +GFQI+GMT+W VTISN C+CSQS
Sbjct: 1 MAPFAKLFAALLFVSLLHKGNCQCVSNDIAIRQTMSGFQIHGMTEWNVTISNICLCSQSE 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
VKLDCRGFQ +SIDPS+LA+ D+ECLVN+G PIF N I +TYA DPKF F LISSQ+
Sbjct: 61 VKLDCRGFQTTKSIDPSVLAVTDSECLVNNGLPIFKSNSITFTYAHDPKFDFKLISSQIN 120
Query: 121 CS 123
CS
Sbjct: 121 CS 122
BLAST of Carg11207 vs. ExPASy TrEMBL
Match:
A0A5D3CMA8 (Protein TAPETUM DETERMINANT 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002630 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 79/122 (64.75%), Postives = 96/122 (78.69%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
MAI +K L LL LS + TGNCQC NNI I+Q+ TGFQI+GMT+W VTI+NNCICSQS+
Sbjct: 1 MAISVKLLAALLVLSFISTGNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSD 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
+KLDC+GF SIDPSIL+I D ECLVN+G+PIFN PI + YA+ PKF F ISSQ++
Sbjct: 61 LKLDCKGFATTLSIDPSILSISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQIS 120
Query: 121 CS 123
CS
Sbjct: 121 CS 122
BLAST of Carg11207 vs. ExPASy TrEMBL
Match:
A0A1S3B1L8 (protein TAPETUM DETERMINANT 1-like OS=Cucumis melo OX=3656 GN=LOC103484995 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 79/122 (64.75%), Postives = 96/122 (78.69%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
MAI +K L LL LS + TGNCQC NNI I+Q+ TGFQI+GMT+W VTI+NNCICSQS+
Sbjct: 1 MAISVKLLAALLVLSFISTGNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSD 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
+KLDC+GF SIDPSIL+I D ECLVN+G+PIFN PI + YA+ PKF F ISSQ++
Sbjct: 61 LKLDCKGFATTLSIDPSILSISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQIS 120
Query: 121 CS 123
CS
Sbjct: 121 CS 122
BLAST of Carg11207 vs. ExPASy TrEMBL
Match:
A0A6J1HGA0 (uncharacterized protein At1g05835-like OS=Cucurbita moschata OX=3662 GN=LOC111463301 PE=4 SV=1)
HSP 1 Score: 160.2 bits (404), Expect = 5.4e-36
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
MA K LLF+S L N QC +NI I Q TGFQI+GMT+W T+SNNC+CSQS
Sbjct: 1 MAPSAKLFAALLFVSFLSKENSQCFLSNITIRQSMTGFQIHGMTEWNTTVSNNCLCSQSE 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQVA 120
VKLDCRGFQ +SIDP ILAI DTECLVN+G PIFN PI +TYA++P+F F ISSQ+A
Sbjct: 61 VKLDCRGFQTTKSIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIA 120
Query: 121 CS 123
CS
Sbjct: 121 CS 122
BLAST of Carg11207 vs. TAIR 10
Match:
AT4G32090.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )
HSP 1 Score: 72.8 bits (177), Expect = 2.2e-13
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 0
Query: 1 MAIFLKFLTPLLFLSLLWTGNCQCESNNIQINQRRTGFQIYGMTQWKVTISNNCICSQSN 60
MA LK +L LS++ G C C IQI RTG +I G +WKVT+ N C C Q +
Sbjct: 1 MAFALKCFVVVLLLSMVSHGLCLCTFGKIQIGAVRTGREIGGQPEWKVTVINTCNCFQKH 60
Query: 61 VKLDCRGFQIFESIDPSILAIFDTECLVNDGRPIFNFNPINYTYARDPKFKFDLISSQV 120
V L C GF + + P +L CL+ G + +TYA P + F + S+V
Sbjct: 61 VTLSCGGFAPAKPVKPLLLQPQGNTCLMIKGAALPAGATAQFTYAGQP-YIFRPVGSKV 118
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7018068.1 | 1.8e-65 | 100.00 | hypothetical protein SDJN02_19934, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_038881121.1 | 1.3e-44 | 72.13 | uncharacterized protein At1g05835-like [Benincasa hispida] | [more] |
KAG7026828.1 | 1.1e-43 | 70.49 | Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosper... | [more] |
XP_023518832.1 | 2.0e-40 | 67.21 | uncharacterized protein LOC111782230 [Cucurbita pepo subsp. pepo] | [more] |
XP_031742370.1 | 1.7e-39 | 66.39 | uncharacterized protein At1g05835-like [Cucumis sativus] >KGN48771.1 hypothetica... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KLZ6 | 8.0e-40 | 66.39 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500630 PE=4 SV=1 | [more] |
A0A6J1KP98 | 1.8e-39 | 66.39 | protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497464 P... | [more] |
A0A5D3CMA8 | 8.8e-39 | 64.75 | Protein TAPETUM DETERMINANT 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
A0A1S3B1L8 | 8.8e-39 | 64.75 | protein TAPETUM DETERMINANT 1-like OS=Cucumis melo OX=3656 GN=LOC103484995 PE=4 ... | [more] |
A0A6J1HGA0 | 5.4e-36 | 63.11 | uncharacterized protein At1g05835-like OS=Cucurbita moschata OX=3662 GN=LOC11146... | [more] |
Match Name | E-value | Identity | Description | |
AT4G32090.1 | 2.2e-13 | 36.13 | Beta-1,3-N-Acetylglucosaminyltransferase family protein | [more] |