Carg11078 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11078
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	10 kDa chaperonin 1, chloroplastic-like
Location	Carg_Chr08: 5660535 .. 5662866 (+)
RNA-Seq Expression	Carg11078
Synteny	Carg11078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCAATGTTCTTGACTGTGAACCCCTTTGTAAACAAAATAGATTCACGCACTTTCTTGAATCAGAGAATGCAGAGTAATTCCTTATCTTCTTCCCTTATCTCTACCCCAATTCCAGTTTCTTCTTTCTTTCGTCGTTGATTTTTGTTCGCATTGATTCTGTGTAGGCACTCGTAGAACTTCCCTTCAAGTCCGCGCTGTATCCAAGAAATTGGAACCCGCCAAGGTCTGTAACTCTTCTCCCATTTTCAGGGGTTTCTATTGAGATTTGAATTGAAACCTTGCAGATTTTGGCTTCGATTTTTCGATTAGTGGTCTGGTTTGAGTTAATGGCGTTATGTTTAATGGCTTTGCGTTTGTAACTGTGGCTCTGTAGGTTGTTCCACAAGGGGATAGAGTCCTCATTCGGCTCGAGGAGCTTCCTGAGGTATGAACTTTGCCATGTTCTTCAATCATTTTTTGCTTTCGTGTTCTTATGTGATATCTTGTTCAAGTTCCTGAAAGGATGAAATGAAATAGGACTTTGTAGCTTCCATTATATCCTTCATGTCATAACTTAAACAACCATGGTAGTGGCATTAATTTGGAAATGCATTGTTTGGTGAGGGCTACCGGATCGGGGAATCCTAAATAAGCTCGAGTCAGTGTGTTAGTGGTCATTGAGGAATACTTTGGCTTAGAAGGTGGTTCCCCCTTCTCACGTAAAAGCGATTAGAATTCGAACATGCTGTGTTTTACTGGGAAGGATTGAACCATGGGAACGAATCTATAGAGCCATCACCTTCTTTGCCCAGTCCTCAAACCTTTTCACAATTACAGTTCACTGTACCCTTTACCTCGTAAACTTAATAAAGTTGCTTGCTGGTCTTTCCATCATCCAATCTACAACAAGGAGGAATGTACTTTGTTTTTTTTCAAACAGAGTAAAGGGTCTTTTGGGGAATGTTACACTCATGAACACTTAAACTTTTGAACTTTAAATAGCTGAGTGACTTAATTTTCAAGTCTCTTTATCATGAACTTTCACAGTGATTTGTGCCATAGCTTAATTTTGATATTTAGTTCCCTTCGTTGGCATTTCAAATTGCATAAGGAACTTAGAATCTAGATAGTTCTATGTGTCAACGACATTGTATTATTATAACAGCTCAAATCCACTGCTAACAGATATTGTCCTCTTTAGGCTTTCTCTTTCGAGCTTCCCCTCAAGGTTTTAAAATGCGTCTTTCAGAGTTATGCAACTAAATTGGTACTCATCTAGATACTTTTCTTTCCGTTGCTCCTACCGATTGAATGGTCTGGTGAAGTGTTCGGATTGCAGCGACGTGGGTGATTCGCTACCCACGACGTCACGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCATAACCAGGTTTCTGTAGGTGAACCTGCGGAAGGATCATTGTCAATGCCTAAACATTAAACGACTCGTGTACGCGTTTTAAAACCTTGAGGGAAAGGCCAAAAGGGAAAACTCAAAGAGGACAATATCTGCTCGCGGTGGGCTTGAGCTGTTAAAAATGGTATCAGAGCCAGATATCGAGGGTGTGCTAAGGAGGATGCTGGCCCTCAAGAGGGGTGGATTGTGAGGTCCCACGTCGGTTGGAGAGAAGAATGAAACATTCCTTATAAGGGTGTAGAAAAACCTCGCCTTATCGGTTGGGAGCTAGAAACCTCTCCCTAGCAGATAAGGGCTCTCTCTCTAGTAGACGCGTTTTAAAAACCTTGAGGGAAAGCTCAAAGAGGATAATATTTACTAGCGGTTGGCTTGGGGCGTTACAATTATGTTCGGTTAGAATCTTTCTTTGACAGAATGAATTGACCAAGAGCACAAGTTCGGGAGTCTACTTTCCTAATGACTAATTATAATGTTCCTTCTCAACTGAGTTCGTTAAAGAGTTTAATCATTTTATGTCACAGAAATCAGCAGGAGGAGTTCTATTGCCCAAGTCAGCCGTTAAATTCGAGCGTTATCTTTCGGGAGAGGTAAGCAAAACTCCTTCCTTTTTCGATAAGATGGGAAATGGATCGAAGCTTCTTACTTCTCTTCGTGTTTGTTTACGCTCTTTCTACTGCTGAATTTGCATCCTTTTTCAGATCCTCTCTACAGGTGCTGATGCTGGGGAATTGGGGCAAGGAAAGAAGGTTTGGATTCAACTTTCTGTTGATTTTCTAATGATATTGTTGAATTCTGCAACATTTTGCCTACAGTTCTCAACTTTTCTCGAAAACAAAATGTTTGCTTCAACCTTTTTTTTTGTGGTACAGGTTCTTTTCTCAGACATAAGTGCTTATGAG

mRNA sequence

ATGGCGTCAATGTTCTTGACTGTGAACCCCTTTGTAAACAAAATAGATTCACGCACTTTCTTGAATCAGAGAATGCAGAGCACTCGTAGAACTTCCCTTCAAGTCCGCGCTGTATCCAAGAAATTGGAACCCGCCAAGGTTGTTCCACAAGGGGATAGAGTCCTCATTCGGCTCGAGGAGCTTCCTGAGAAATCAGCAGGAGGAGTTCTATTGCCCAAGTCAGCCGTTAAATTCGAGCGTTATCTTTCGGGAGAGATCCTCTCTACAGGTGCTGATGCTGGGGAATTGGGGCAAGGAAAGAAGGTTCTTTTCTCAGACATAAGTGCTTATGAG

Coding sequence (CDS)

ATGGCGTCAATGTTCTTGACTGTGAACCCCTTTGTAAACAAAATAGATTCACGCACTTTCTTGAATCAGAGAATGCAGAGCACTCGTAGAACTTCCCTTCAAGTCCGCGCTGTATCCAAGAAATTGGAACCCGCCAAGGTTGTTCCACAAGGGGATAGAGTCCTCATTCGGCTCGAGGAGCTTCCTGAGAAATCAGCAGGAGGAGTTCTATTGCCCAAGTCAGCCGTTAAATTCGAGCGTTATCTTTCGGGAGAGATCCTCTCTACAGGTGCTGATGCTGGGGAATTGGGGCAAGGAAAGAAGGTTCTTTTCTCAGACATAAGTGCTTATGAG

Protein sequence

MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE

Homology

[Close]

BLAST of Carg11078 vs. NCBI nr
Match: XP_022964390.1 (10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 211.8 bits (538), Expect = 2.9e-51
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60
           MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 111

[Close]

BLAST of Carg11078 vs. NCBI nr
Match: KAG7026058.1 (10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 2.9e-51
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60
           MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 111

[Close]

BLAST of Carg11078 vs. NCBI nr
Match: KAG6593719.1 (10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.8 bits (538), Expect = 2.9e-51
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60
           MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 111

[Close]

BLAST of Carg11078 vs. NCBI nr
Match: XP_023513476.1 (10 kDa chaperonin 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-49
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60
           MASMFLTV PFVNKIDSRTFLNQR+QSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKIDSRTFLNQRIQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           LPEKSAGGVLLPKSAVKFERYL GEILSTGADAGELGQGKKVLFSDISAYE
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYE 111

[Close]

BLAST of Carg11078 vs. NCBI nr
Match: XP_022958987.1 (10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata] >XP_022958988.1 10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 190.3 bits (482), Expect = 9.1e-45
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60
           MASMFLTV PFVNKID  T  N+R+QSTRRTSL+V AVSKKLEPAKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKIDVSTLSNRRIQSTRRTSLKVCAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           LPEKSAGGVLLPKSAVKFERYL GEILSTGADAGELGQGKKVLFSDISAYE
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYE 111

[Close]

BLAST of Carg11078 vs. ExPASy Swiss-Prot
Match: Q9M1C2 (10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-30
Identity = 72/115 (62.61%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MASMFLTV-NPFVN---KIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLI 60
           MAS F+TV  PF++   K ++ T   Q +   RR S ++ AVS K EPAKVVPQ DRVL+
Sbjct: 1   MASSFITVPKPFLSFPIKTNAPTLPQQTLLGIRRNSFRINAVSTKWEPAKVVPQADRVLV 60

Query: 61  RLEELPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           RLE LPEKS+GGVLLPKSAVKFERYL+GE++S G++ GE+  GKKVLFSD+SAYE
Sbjct: 61  RLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVGSEVGEVEPGKKVLFSDMSAYE 115

[Close]

BLAST of Carg11078 vs. ExPASy Swiss-Prot
Match: O80504 (10 kDa chaperonin 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-2 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-26
Identity = 65/117 (55.56%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MASMFLTVNP-----FVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVL 60
           MAS F+   P     F  K  + +  N  +  +RR  L+++A+S K EP KVVPQ DRVL
Sbjct: 1   MASTFVCSLPNPFFAFPVKATTPSTANHTLLGSRRGCLRIKAISTKWEPTKVVPQADRVL 60

Query: 61  IRLEELPEKSAGGVLLPKSAVKFERYLSGEILSTGADAG-ELGQGKKVLFSDISAYE 112
           +RLE+LP KS+GGVLLPK+AVKFERYL+GEI+S G++ G ++G GK+VLFSD+SAYE
Sbjct: 61  VRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSEVGQQVGPGKRVLFSDVSAYE 117

[Close]

BLAST of Carg11078 vs. ExPASy Swiss-Prot
Match: Q7TTX2 (10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) OX=84588 GN=groS PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 42  LEPAKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLSGEILSTG---------AD 101
           L  + V P GDRV I++ E  EK+AGG+LLP +A   E+   GE++  G           
Sbjct: 6   LSVSTVKPLGDRVFIKVSESEEKTAGGILLPDTAK--EKPQVGEVVQVGPGKRNDDGSRQ 65

Query: 102 AGELGQGKKVLFS 106
           A E+G G KVL+S
Sbjct: 66  APEVGVGDKVLYS 76

[Close]

BLAST of Carg11078 vs. ExPASy Swiss-Prot
Match: Q7TUS3 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=groS PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 42  LEPAKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLSGEILSTG---------AD 101
           L  + V P GDRV +++ E  EK+AGG+LLP +A   E+   GE++  G           
Sbjct: 6   LSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAK--EKPQVGEVVQVGPGKRNDDGSRQ 65

Query: 102 AGELGQGKKVLFS 106
           A E+G G KVL+S
Sbjct: 66  APEVGVGDKVLYS 76

[Close]

BLAST of Carg11078 vs. ExPASy Swiss-Prot
Match: A5GNB0 (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) OX=32051 GN=groS PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 42  LEPAKVVPQGDRVLIRLEELPEKSAGGVLLPKSAVKFERYLSGEILSTG---------AD 101
           L  + V P GDRV +++ E  EK+AGG+LLP +A   E+   GE++  G           
Sbjct: 6   LSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAK--EKPQVGEVVQVGPGKANEDGSRQ 65

Query: 102 AGELGQGKKVLFS 106
           A E+G G KVL+S
Sbjct: 66  APEVGVGDKVLYS 76

[Close]

BLAST of Carg11078 vs. ExPASy TrEMBL
Match: A0A6J1HKN7 (10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111464422 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60
           MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 111

[Close]

BLAST of Carg11078 vs. ExPASy TrEMBL
Match: A0A6J1H3B8 (10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460114 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.4e-45
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60
           MASMFLTV PFVNKID  T  N+R+QSTRRTSL+V AVSKKLEPAKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKIDVSTLSNRRIQSTRRTSLKVCAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           LPEKSAGGVLLPKSAVKFERYL GEILSTGADAGELGQGKKVLFSDISAYE
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYE 111

[Close]

BLAST of Carg11078 vs. ExPASy TrEMBL
Match: A0A6J1KWR7 (10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499414 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.7e-45
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60
           MASMFLTV PFVNKID  T  N+R+QSTRRTSL+V AVSKKLEPAKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKIDVPTLSNRRIQSTRRTSLKVCAVSKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           LPEKSAGGVLLPKSAVKFERYL GEILSTGADAGELGQGKKVLFSDISAYE
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGELGQGKKVLFSDISAYE 111

[Close]

BLAST of Carg11078 vs. ExPASy TrEMBL
Match: A0A5D3DLT2 (Chloroplast chaperonin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00930 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60
           MASMFLTV PFVNK ++ TF NQR+ STRR SL+V AV KKLEPAKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKFETPTFSNQRLHSTRRISLKVCAVGKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           LPEKSAGGVLLPKSAVKFERYL GEILSTGADAG+LGQGKKVLFSDISAYE
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGDLGQGKKVLFSDISAYE 111

[Close]

BLAST of Carg11078 vs. ExPASy TrEMBL
Match: E5GC96 (Chloroplast chaperonin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MASMFLTVNPFVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLIRLEE 60
           MASMFLTV PFVNK ++ TF NQR+ STRR SL+V AV KKLEPAKVVPQGDRVLIRLEE
Sbjct: 1   MASMFLTVKPFVNKFETPTFSNQRLHSTRRISLKVCAVGKKLEPAKVVPQGDRVLIRLEE 60

Query: 61  LPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           LPEKSAGGVLLPKSAVKFERYL GEILSTGADAG+LGQGKKVLFSDISAYE
Sbjct: 61  LPEKSAGGVLLPKSAVKFERYLLGEILSTGADAGDLGQGKKVLFSDISAYE 111

[Close]

BLAST of Carg11078 vs. TAIR 10
Match: AT3G60210.1 (GroES-like family protein )

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-31
Identity = 72/115 (62.61%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MASMFLTV-NPFVN---KIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVLI 60
           MAS F+TV  PF++   K ++ T   Q +   RR S ++ AVS K EPAKVVPQ DRVL+
Sbjct: 1   MASSFITVPKPFLSFPIKTNAPTLPQQTLLGIRRNSFRINAVSTKWEPAKVVPQADRVLV 60

Query: 61  RLEELPEKSAGGVLLPKSAVKFERYLSGEILSTGADAGELGQGKKVLFSDISAYE 112
           RLE LPEKS+GGVLLPKSAVKFERYL+GE++S G++ GE+  GKKVLFSD+SAYE
Sbjct: 61  RLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVGSEVGEVEPGKKVLFSDMSAYE 115

[Close]

BLAST of Carg11078 vs. TAIR 10
Match: AT2G44650.1 (chloroplast chaperonin 10 )

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-27
Identity = 65/117 (55.56%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MASMFLTVNP-----FVNKIDSRTFLNQRMQSTRRTSLQVRAVSKKLEPAKVVPQGDRVL 60
           MAS F+   P     F  K  + +  N  +  +RR  L+++A+S K EP KVVPQ DRVL
Sbjct: 1   MASTFVCSLPNPFFAFPVKATTPSTANHTLLGSRRGCLRIKAISTKWEPTKVVPQADRVL 60

Query: 61  IRLEELPEKSAGGVLLPKSAVKFERYLSGEILSTGADAG-ELGQGKKVLFSDISAYE 112
           +RLE+LP KS+GGVLLPK+AVKFERYL+GEI+S G++ G ++G GK+VLFSD+SAYE
Sbjct: 61  VRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSEVGQQVGPGKRVLFSDVSAYE 117

The following BLAST results are available for this feature:

BLAST of Carg11078 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964390.1	2.9e-51	100.00	10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata]	[more]
KAG7026058.1	2.9e-51	100.00	10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6593719.1	2.9e-51	100.00	10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023513476.1	2.1e-49	97.30	10 kDa chaperonin 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958987.1	9.1e-45	90.99	10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata] >XP_022958988.1 10 ...	[more]

BLAST of Carg11078 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1C2	1.7e-30	62.61	10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE...	[more]
O80504	2.0e-26	55.56	10 kDa chaperonin 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-2 PE...	[more]
Q7TTX2	1.6e-04	41.10	10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) OX=84588 GN=groS PE=3 SV=...	[more]
Q7TUS3	2.1e-04	39.73	10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=groS ...	[more]
A5GNB0	2.1e-04	39.73	10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) OX=32051 GN=groS PE=3 SV=...	[more]

BLAST of Carg11078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HKN7	1.4e-51	100.00	10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1H3B8	4.4e-45	90.99	10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KWR7	5.7e-45	90.99	10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499...	[more]
A0A5D3DLT2	1.4e-43	87.39	Chloroplast chaperonin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
E5GC96	1.4e-43	87.39	Chloroplast chaperonin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Carg11078 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60210.1	1.2e-31	62.61	GroES-like family protein	[more]
AT2G44650.1	1.4e-27	55.56	chloroplast chaperonin 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 46..111 e-value: 4.3E-4 score: 9.8
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 46..109 e-value: 2.1E-9 score: 37.3
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 22..111
IPR020818	GroES chaperonin family	CDD	cd00320	cpn10	coord: 46..111 e-value: 1.05573E-13 score: 59.4431
IPR037124	GroES chaperonin superfamily	GENE3D	2.30.33.40	GroES chaperonin	coord: 42..111 e-value: 3.2E-9 score: 38.6
None	No IPR available	PANTHER	PTHR10772:SF13	10 KDA CHAPERONIN 1, CHLOROPLASTIC-RELATED	coord: 22..111
IPR011032	GroES-like superfamily	SUPERFAMILY	50129	GroES-like	coord: 46..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11078-RA	Carg11078-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051085	chaperone cofactor-dependent protein refolding
biological_process	GO:0006457	protein folding
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051082	unfolded protein binding