Carg11004 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11004
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsmall acidic protein 1
LocationCarg_Chr08: 6175083 .. 6176418 (+)
RNA-Seq ExpressionCarg11004
SyntenyCarg11004
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCGTGATTGTGAGGGCTCGATATATCTATCCCTTTGCTTCTCCAGTTCGGCACAAAGACGAAGCAAGAAAAATAAGAGCGAAACAGAACTCAGAAATAAAAGCTGGGCGGCTCGAAGCGTGATTGTGAAGGCTCGATCAGGTAAGAATCTTGATTGATTACAATTTCTTTGCCTCTACATTTTCTTGTTTCTTGTGATTTGAAGCTGTTGTAATTCGCTTCGCCTCTCGATTTTCTTGTTTCTTGTGATTTGAAGCTGTTGTAATTCGCTTCGCCTCTCGATTTTCTTGTTTCTTGTGATTTGAAGCTGTTGTAATTCGCTTCGCCTCTCGATTTTCTTGTTTCTTGTGATTTGAAGCTGTTGTAATTCGCTTCGCCTCTCGATTTTCTCGATTTTGTTGTAATTCGCTTCGTTTTTCTTGTTTCTTGTTGTTCGCTTCGATTGTTGTAAGCTTCGCCTGATTTTCTTGTGATTTGAAGCTGTTGTAATTCGCTTCGCCTCGTTCAAAATTCTATTCCGGTGAGTTGCTAATCAAAAGATGTCCATGTTTCATTAATGAAATCTTCTTTGATCTTGATCATTTTCCAGTCGTTCATTATATAGAAGCCTAAAAGAGATCGAATGGTTGTTTCGCTTTTTATTTTGATTTTGTGAAGTTCCGAAGAAACATATTGGTTTTGTTATTGATGATTGCAGCAGCGAGAGGAGAAATGAGGCCTACACCGATGGAGTTCTTTGCGGAGATGGAAGAACAGGGATCGACAGTAGCGATGGACGTGGATGATGTTGATCCACTTGAGATATTAGGCGAGGGCGTGATCTCAGCCGAGAACAAGCTCGCCGATGCCGATTTCTTCAACTCCTTTGAGGACGATTTTGATGACTCTGACATCAACTGAAATTCATTTCCCTGGTTCCATTCGAAACAAGTAGTCAGTTTACTAATCGTATGTTTATTGCTTCTGTTGATGAAACAAGATGATTGATGCTAGTATGTCCTACTGCTTTTTAGGGATTTCAGCACTTCTAGTTTCTTGGCGATAAATTGAAAATTGGAGACTGATTGCTTTTGAGTACTTGATTGGTTATGGCATATTTGCTTGCTTTTCCCTCAACCACAATAATCAACCGTGTAATCTTTGTCATTAGTTACAAGGAAAATTAAGGAGGTGTTTGTATGTAGTAGACAATTCCTGCAACTATGTGCTCCATTCTGATGTTTAGTAATCTATTTTGGACTTTGAGGAAGTCCATAGGTTAGCCTGAATATCCTTCGAGTATAACTGGCTTGGATAGGTTAGCCTGAATATCCTTCGAGTATAACTGGCTTGGAT

mRNA sequence

AAGCGTGATTGTGAGGGCTCGATATATCTATCCCTTTGCTTCTCCAGTTCGGCACAAAGACGAAGCAAGAAAAATAAGAGCGAAACAGAACTCAGAAATAAAAGCTGGGCGGCTCGAAGCGTGATTGTGAAGGCTCGATCAGCAGCGAGAGGAGAAATGAGGCCTACACCGATGGAGTTCTTTGCGGAGATGGAAGAACAGGGATCGACAGTAGCGATGGACGTGGATGATGTTGATCCACTTGAGATATTAGGCGAGGGCGTGATCTCAGCCGAGAACAAGCTCGCCGATGCCGATTTCTTCAACTCCTTTGAGGACGATTTTGATGACTCTGACATCAACTGAAATTCATTTCCCTGGTTCCATTCGAAACAAGTAGTCAGTTTACTAATCGTATGTTTATTGCTTCTGTTGATGAAACAAGATGATTGATGCTAGTATGTCCTACTGCTTTTTAGGGATTTCAGCACTTCTAGTTTCTTGGCGATAAATTGAAAATTGGAGACTGATTGCTTTTGAGTACTTGATTGGTTATGGCATATTTGCTTGCTTTTCCCTCAACCACAATAATCAACCGTGTAATCTTTGTCATTAGTTACAAGGAAAATTAAGGAGGTGTTTGTATGTAGTAGACAATTCCTGCAACTATGTGCTCCATTCTGATGTTTAGTAATCTATTTTGGACTTTGAGGAAGTCCATAGGTTAGCCTGAATATCCTTCGAGTATAACTGGCTTGGATAGGTTAGCCTGAATATCCTTCGAGTATAACTGGCTTGGAT

Coding sequence (CDS)

AAGCGTGATTGTGAGGGCTCGATATATCTATCCCTTTGCTTCTCCAGTTCGGCACAAAGACGAAGCAAGAAAAATAAGAGCGAAACAGAACTCAGAAATAAAAGCTGGGCGGCTCGAAGCGTGATTGTGAAGGCTCGATCAGCAGCGAGAGGAGAAATGAGGCCTACACCGATGGAGTTCTTTGCGGAGATGGAAGAACAGGGATCGACAGTAGCGATGGACGTGGATGATGTTGATCCACTTGAGATATTAGGCGAGGGCGTGATCTCAGCCGAGAACAAGCTCGCCGATGCCGATTTCTTCAACTCCTTTGAGGACGATTTTGATGACTCTGACATCAACTGA

Protein sequence

KRDCEGSIYLSLCFSSSAQRRSKKNKSETELRNKSWAARSVIVKARSAARGEMRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSDIN
Homology
[Close]
BLAST of Carg11004 vs. NCBI nr
Match: KAG7026131.1 (Small acidic protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 4.2e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   KRDCEGSIYLSLCFSSSAQRRSKKNKSETELRNKSWAARSVIVKARSAARGEMRPTPMEF 60
           KRDCEGSIYLSLCFSSSAQRRSKKNKSETELRNKSWAARSVIVKARSAARGEMRPTPMEF
Sbjct: 1   KRDCEGSIYLSLCFSSSAQRRSKKNKSETELRNKSWAARSVIVKARSAARGEMRPTPMEF 60

Query: 61  FAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSDIN 115
           FAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSDIN
Sbjct: 61  FAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSDIN 114

[Close]
BLAST of Carg11004 vs. NCBI nr
Match: KAG6593800.1 (Small acidic protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 12  LCFSSSAQRRSKKNKSETELRNKSWAARSVIVKARSAARGEMRPTPMEFFAEMEEQGSTV 71
           +  S SAQRRSKKNKSETELRNKSWAARSVIVKARSAARGEMRPTPMEFFAEMEEQGSTV
Sbjct: 1   MAHSGSAQRRSKKNKSETELRNKSWAARSVIVKARSAARGEMRPTPMEFFAEMEEQGSTV 60

Query: 72  AMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSDIN 115
           AMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSDIN
Sbjct: 61  AMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSDIN 103

[Close]
BLAST of Carg11004 vs. NCBI nr
Match: XP_022964281.1 (small acidic protein 1 [Cucurbita moschata] >XP_022964282.1 small acidic protein 1 [Cucurbita moschata] >XP_022964283.1 small acidic protein 1 [Cucurbita moschata] >XP_022964284.1 small acidic protein 1 [Cucurbita moschata] >XP_023000574.1 small acidic protein 1 [Cucurbita maxima] >XP_023000575.1 small acidic protein 1 [Cucurbita maxima] >XP_023000576.1 small acidic protein 1 [Cucurbita maxima] >XP_023000577.1 small acidic protein 1 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

[Close]
BLAST of Carg11004 vs. NCBI nr
Match: XP_038875245.1 (small acidic protein 1 [Benincasa hispida])

HSP 1 Score: 120.9 bits (302), Expect = 7.0e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRPTPMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRPTPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

[Close]
BLAST of Carg11004 vs. NCBI nr
Match: XP_023513491.1 (small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513492.1 small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513494.1 small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513495.1 small acidic protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 7.0e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLAD+DFFNSFEDDFDDSD
Sbjct: 1   MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADSDFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

[Close]
BLAST of Carg11004 vs. ExPASy Swiss-Prot
Match: Q9T0H2 (Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-14
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0 

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRP  ++  +EM++ GS++AMDVDD++ +EIL EG + ++NKLADADFFN F+DDFDD+D
Sbjct: 1   MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

[Close]
BLAST of Carg11004 vs. ExPASy Swiss-Prot
Match: Q1ECS0 (Small acidic protein 2 OS=Arabidopsis thaliana OX=3702 GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 0 

Query: 53  MRP-TPMEFFAEMEEQGSTVAM----DVDDVDPLEILGE--GVISAENKLADADFFNSFE 112
           MRP    +F  EME  G ++ M    D DD  P+++  E  G+   + K  D+DFFN FE
Sbjct: 10  MRPMVYRDFLGEMEYPGYSMPMQMEIDEDDFGPMDMQFEVGGISPFQMKPEDSDFFNKFE 69

Query: 113 DDFDDSDIN 115
           DDFDDSDIN
Sbjct: 70  DDFDDSDIN 78

[Close]
BLAST of Carg11004 vs. ExPASy TrEMBL
Match: A0A6J1KE12 (small acidic protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494814 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.5e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

[Close]
BLAST of Carg11004 vs. ExPASy TrEMBL
Match: A0A6J1HIH2 (small acidic protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464345 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.5e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

[Close]
BLAST of Carg11004 vs. ExPASy TrEMBL
Match: A0A6J1CAH2 (small acidic protein 1 OS=Momordica charantia OX=3673 GN=LOC111009862 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.9e-23
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0 

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRPTPM+FFAEMEEQGSTVAMDVDDVDPLEI  EGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRPTPMDFFAEMEEQGSTVAMDVDDVDPLEIFSEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

[Close]
BLAST of Carg11004 vs. ExPASy TrEMBL
Match: A0A0A0LNK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.3e-23
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

[Close]
BLAST of Carg11004 vs. ExPASy TrEMBL
Match: A0A5A7SMJ5 (Small acidic protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00640 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 58/62 (93.55%), Postives = 61/62 (98.39%), Query Frame = 0 

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MR +PMEFFAE+EEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD
Sbjct: 1   MRSSPMEFFAELEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 60

Query: 113 IN 115
           +N
Sbjct: 61  VN 62

[Close]
BLAST of Carg11004 vs. TAIR 10
Match: AT4G13520.1 (small acidic protein 1 )

HSP 1 Score: 80.5 bits (197), Expect = 9.7e-16
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0 

Query: 53  MRPTPMEFFAEMEEQGSTVAMDVDDVDPLEILGEGVISAENKLADADFFNSFEDDFDDSD 112
           MRP  ++  +EM++ GS++AMDVDD++ +EIL EG + ++NKLADADFFN F+DDFDD+D
Sbjct: 1   MRPMQLDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTD 60

Query: 113 IN 115
           IN
Sbjct: 61  IN 62

[Close]
BLAST of Carg11004 vs. TAIR 10
Match: AT3G24280.1 (small acidic protein 2 )

HSP 1 Score: 47.4 bits (111), Expect = 9.1e-06
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 0 

Query: 53  MRP-TPMEFFAEMEEQGSTVAM----DVDDVDPLEILGE--GVISAENKLADADFFNSFE 112
           MRP    +F  EME  G ++ M    D DD  P+++  E  G+   + K  D+DFFN FE
Sbjct: 10  MRPMVYRDFLGEMEYPGYSMPMQMEIDEDDFGPMDMQFEVGGISPFQMKPEDSDFFNKFE 69

Query: 113 DDFDDSDIN 115
           DDFDDSDIN
Sbjct: 70  DDFDDSDIN 78

The following BLAST results are available for this feature:
BLAST of Carg11004 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026131.14.2e-53100.00Small acidic protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6593800.11.3e-4396.12Small acidic protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022964281.13.1e-24100.00small acidic protein 1 [Cucurbita moschata] >XP_022964282.1 small acidic protein... [more]
XP_038875245.17.0e-2498.39small acidic protein 1 [Benincasa hispida][more]
XP_023513491.17.0e-2498.39small acidic protein 1 [Cucurbita pepo subsp. pepo] >XP_023513492.1 small acidic... [more]
BLAST of Carg11004 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9T0H21.4e-1459.68Small acidic protein 1 OS=Arabidopsis thaliana OX=3702 GN=SMAP1 PE=1 SV=1[more]
Q1ECS01.3e-0446.38Small acidic protein 2 OS=Arabidopsis thaliana OX=3702 GN=SMAP2 PE=2 SV=1[more]
BLAST of Carg11004 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KE121.5e-24100.00small acidic protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494814 PE=4 SV=1[more]
A0A6J1HIH21.5e-24100.00small acidic protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464345 PE=4 SV=1[more]
A0A6J1CAH24.9e-2395.16small acidic protein 1 OS=Momordica charantia OX=3673 GN=LOC111009862 PE=4 SV=1[more]
A0A0A0LNK18.3e-2395.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G166190 PE=4 SV=1[more]
A0A5A7SMJ51.1e-2293.55Small acidic protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9... [more]
BLAST of Carg11004 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G13520.19.7e-1659.68small acidic protein 1 [more]
AT3G24280.19.1e-0646.38small acidic protein 2 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11004-RACarg11004-RAmRNA