Carg10897 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10897
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Alba domain-containing protein
Location	Carg_Chr05: 11462224 .. 11465060 (-)
RNA-Seq Expression	Carg10897
Synteny	Carg10897

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGAAGAAAAAGATCAGAAATTGTATTGCAGTGTTTTAGGGTTTTGTGTTGCATCAGAAATTGTGTTCCTTTGGCCTCCTCCAATAACCCTAAAAACTAGGGTTTTGGGTTTTGTGTTGCAGTGTTTTAGGGTTTTTGCGAGGTGAAGGAAGGAGGAGCTTGATGGAAGAAATTGTAGAAGGCGTGGATTCCATGAACTTGGGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCTTTGTTCTTCTATGTCAATCTCGCTAAGGTTTGCAATTTCGCTATGTTTCGATTCCATTTGTTCTTATAATGCGTCGTGTTTCTGATTTTTGTTTTCGGTTTTTAATGTAGAGGTACATGCAGCAGCATGATGTGGTCGAACTTTCTGCTCTTGGAATGGGTAATTTTTCTGCTTTATGCTTCCATTTTGTTCTTTAAGCCCTTTACCCGACTAATAGGTCTGTGTAATTGTAATTGATTTGAAGTCTGCCTTAAAAGGACTTTAAATTCTGAGTTACGGGACTATCTGTTCATGATTAAGTAAAGTAATGTGCAATTTGCCATTAGTTTGTTGCCTTTCTTGTTGCCGTTTTACTCTCAGTCTTCCTTGGATCTGACGACCTTATACTTCTCACATCACAACCTGGGTGCTATGCCACAGTATGCGGATAACTGGGGGGACTTGAGTGGTGTTATTGGAACTAAATGGAATGTGCTGTGAATGATGTTTTGAAAAAGTTTGGAAGATGCATACTGATATTATTTTTGTTAATTTCAAGTTTTTGGATAACTGATAATCACCTGGAATTCTGTATTCATAATGATGAAAATTTGTTGAAAGACTTTCCAGCAGGAGTCATGTGAGATCCTACATCGGTTGGGGAGGAGAATGAAGCATTTTTTATAAGGATGTGGAAACTCCTCCCTAGCAGACGCGTTTAAAAACCTTGAGAGGAATCCTAAAAGGGAAAACCCAAAGAGGACAGTATTTGCTAGTGGTGAGCTTGGGCTGTTACTAATGATATCAGAGCCAGACACTGGGCGATGTGCCATCGAGGAGACTGAGCCCCAAAGGGGGTGGACACGAGGCGGTGTGGATTGGGCCCTGAAGGGGGGTGGTTGGGGGTCCCACATTGATTGGAGAAGTGAGCGAGTGCCAGCGAGGACGCTGTGCCCCAAAGAGGATGAATTGTGAGATCCCACATTAGTTGGGGAGGAGAACGAAGCATACTTTATAAGGGTTTGGGAACCTCTCTCTAGTAGATGCGTTTTAAAAACCTTCAGGGGAAGTCCGAAAGGGAAAGTCCAAAACGGACAATATCTGCTAGCGGTGGGCTTGGGCCATTATAAGTCATGTTTGGTTTTTGGTGCATCTTTTATCTATTTTTACCATCCCAATGAATGAACTTTATTGTATTTTTTTTTTGGGACTTACTCATGATTTGTCCATAAAAATTTATCTTTGACTCCATTAATGAACATACCTTTGTTTTGCAGCAATTGCCACAGTTGTCACAGTTGCCGAAATTTTGAAGAACAATGGACTGGCTGTTGAGAAGAGTATGGTTTCTGGCTTTCTCGTTTTCAGATAAGAGTGTATACTTTTGTTCCTTTTAGTGACTAACATCGAGTTTACAGAGATCACAACCTCAACTGTTGATATCAAGGACGACTCAAGAGGCCGACCTGTCCAGAAGGCTAAGGTAAAGATTGCCCCCATGCATATTTAAGATCTCCTAATTGGTAAATACTCGACAAATCCTAACGAGGGGACGTTTACTAGAGAAGGTCAACTTTTGAACCTTCTTCAGTACGTAGGAATTTTTAAAATGGCTGATAGAGTAATCACGGTTCCATCTGCATTCGGACATCAAAATATCGACAAGTCTGGTTTGCAATGTTAACTTGCATGATCTGTGTGTTTTTTTTTTTTTTGTACGAAAAAAGAGACCGAGGTCCTAAAAATCTTTTATACATTCATTATTTGTTGGATTTGTTACTTGTTTATGTTGAACAAAAACGTATTAGTTAGTGTTCTTCTATCACCATGGAACTCAATGAATTTGTTCTTTTCTTTCTCCAAGAGCTTCTTGAACACTGATTGTAACTTTGACCTTGTCAGATCGAGATCTTGCTGGGTAAAACCGAAAACTTCGATGAATTGATGGCAGCTGCTGCCGAGGAAAGGGCGGAGACAGGTGATGCAGATGAGCAAAGTTAAAAGATGAATTACCATTAGCTGTATCTTTTATTTCTGCTATAATTTTTGTTTGTGATGAACCCGATTCTCCATCATTTATTGTAGCTCTCTAGGGGTACTTGAGGAGTTAAGGCACTATTTTTCATAGTCAGTTTGTTCATAGGTTTCGTTTTAGAGATCTTCAAAGTTTCTTTTGGAGTCTTTTGCCATATAGAAAACCAATTTTTGCATCGTTATCTTCTGCTTCCAATCTTTTGGATTTTAGAAGAAACTCTAATAATTTGTTAACCCTAATTAGTCCATTTGAAGCATGTGCACGAAAAAACTTGAGTTATGGTCTATATTTTTTGATATTGTTTTATGGAATTCTCAAAATCAATAATTTTTTACTTGAATATCAAAGGAAAAAGGCCTATAGCACTTGAAGAAAATTTGTATACTCCAATGCAATATTGAGTCACGATCGATGTTTTTTTTTTTTTTGATATTGTTGTGGGGGATGTTCAAATTTGTTGATCAAAGAGTTTAAGAGCAAATTTAGGAGCTAAGTTTATGAACAGTCCTTTGAAATGTATGTATTACAAGAAGCAATATTGAATTGTTTCTATATTTGATTTCCATA

mRNA sequence

TAAGAAGAAAAAGATCAGAAATTGTATTGCAGTGTTTTAGGGTTTTGTGTTGCATCAGAAATTGTGTTCCTTTGGCCTCCTCCAATAACCCTAAAAACTAGGGTTTTGGGTTTTGTGTTGCAGTGTTTTAGGGTTTTTGCGAGGTGAAGGAAGGAGGAGCTTGATGGAAGAAATTGTAGAAGGCGTGGATTCCATGAACTTGGGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCTTTGTTCTTCTATGTCAATCTCGCTAAGAGGTACATGCAGCAGCATGATGTGGTCGAACTTTCTGCTCTTGGAATGGCAATTGCCACAGTTGTCACAGTTGCCGAAATTTTGAAGAACAATGGACTGGCTGTTGAGAAGAAGATCACAACCTCAACTGTTGATATCAAGGACGACTCAAGAGGCCGACCTGTCCAGAAGGCTAAGATCGAGATCTTGCTGGGTAAAACCGAAAACTTCGATGAATTGATGGCAGCTGCTGCCGAGGAAAGGGCGGAGACAGGTGATGCAGATGAGCAAAGTTAAAAGATGAATTACCATTAGCTGTATCTTTTATTTCTGCTATAATTTTTGTTTGTGATGAACCCGATTCTCCATCATTTATTGTAGCTCTCTAGGGGTACTTGAGGAGTTAAGGCACTATTTTTCATAGTCAGTTTGTTCATAGGTTTCGTTTTAGAGATCTTCAAAGTTTCTTTTGGAGTCTTTTGCCATATAGAAAACCAATTTTTGCATCGTTATCTTCTGCTTCCAATCTTTTGGATTTTAGAAGAAACTCTAATAATTTGTTAACCCTAATTAGTCCATTTGAAGCATGTGCACGAAAAAACTTGAGTTATGGTCTATATTTTTTGATATTGTTTTATGGAATTCTCAAAATCAATAATTTTTTACTTGAATATCAAAGGAAAAAGGCCTATAGCACTTGAAGAAAATTTGTATACTCCAATGCAATATTGAGTCACGATCGATGTTTTTTTTTTTTTTGATATTGTTGTGGGGGATGTTCAAATTTGTTGATCAAAGAGTTTAAGAGCAAATTTAGGAGCTAAGTTTATGAACAGTCCTTTGAAATGTATGTATTACAAGAAGCAATATTGAATTGTTTCTATATTTGATTTCCATA

Coding sequence (CDS)

ATGGAAGAAATTGTAGAAGGCGTGGATTCCATGAACTTGGGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCTTTGTTCTTCTATGTCAATCTCGCTAAGAGGTACATGCAGCAGCATGATGTGGTCGAACTTTCTGCTCTTGGAATGGCAATTGCCACAGTTGTCACAGTTGCCGAAATTTTGAAGAACAATGGACTGGCTGTTGAGAAGAAGATCACAACCTCAACTGTTGATATCAAGGACGACTCAAGAGGCCGACCTGTCCAGAAGGCTAAGATCGAGATCTTGCTGGGTAAAACCGAAAACTTCGATGAATTGATGGCAGCTGCTGCCGAGGAAAGGGCGGAGACAGGTGATGCAGATGAGCAAAGTTAA

Protein sequence

MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEERAETGDADEQS

Homology

[Close]

BLAST of Carg10897 vs. NCBI nr
Match: KAG6599408.1 (hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244.2 bits (622), Expect = 6.3e-61
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT
Sbjct: 266 MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 325

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE
Sbjct: 326 VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 385

Query: 121 RAETGDADEQS 132
           RAETGDADEQS
Sbjct: 386 RAETGDADEQS 396

[Close]

BLAST of Carg10897 vs. NCBI nr
Match: XP_022946216.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >KAG7030395.1 hypothetical protein SDJN02_08742 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.2 bits (622), Expect = 6.3e-61
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RAETGDADEQS 132
           RAETGDADEQS
Sbjct: 121 RAETGDADEQS 131

[Close]

BLAST of Carg10897 vs. NCBI nr
Match: XP_023547053.1 (uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEIVEGVDS+NLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT
Sbjct: 1   MEEIVEGVDSINLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RAETGDADEQS 132
           RAETGDADEQS
Sbjct: 121 RAETGDADEQS 131

[Close]

BLAST of Carg10897 vs. NCBI nr
Match: XP_022999418.1 (uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEI LGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEIFLGKTENFDELMAAAAEE 120

Query: 121 RAETGDADEQS 132
           RAETGDADEQS
Sbjct: 121 RAETGDADEQS 131

[Close]

BLAST of Carg10897 vs. NCBI nr
Match: XP_008457716.1 (PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >KAA0061596.1 DNA/RNA-binding protein Alba-like protein [Cucumis melo var. makuwa] >TYJ97805.1 DNA/RNA-binding protein Alba-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 2.7e-56
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEIVEGV+S+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RAETGDADEQS 132
           R E GDADEQS
Sbjct: 121 RGEIGDADEQS 131

[Close]

BLAST of Carg10897 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-46
Identity = 104/131 (79.39%), Postives = 115/131 (87.79%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEI +GV++MNL +DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ++ VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAKIEI L K+E FDELMAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 121 RAETGDADEQS 132
           + E  +A  Q+
Sbjct: 121 K-EDAEAQVQN 130

[Close]

BLAST of Carg10897 vs. ExPASy TrEMBL
Match: A0A6J1G312 (uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC111450368 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.0e-61
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RAETGDADEQS 132
           RAETGDADEQS
Sbjct: 121 RAETGDADEQS 131

[Close]

BLAST of Carg10897 vs. ExPASy TrEMBL
Match: A0A6J1KJN4 (uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC111493796 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.8e-61
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEI LGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEIFLGKTENFDELMAAAAEE 120

Query: 121 RAETGDADEQS 132
           RAETGDADEQS
Sbjct: 121 RAETGDADEQS 131

[Close]

BLAST of Carg10897 vs. ExPASy TrEMBL
Match: A0A5D3BH52 (DNA/RNA-binding protein Alba-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00150 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.3e-56
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEIVEGV+S+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RAETGDADEQS 132
           R E GDADEQS
Sbjct: 121 RGEIGDADEQS 131

[Close]

BLAST of Carg10897 vs. ExPASy TrEMBL
Match: A0A1S3C651 (uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103497344 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.3e-56
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEIVEGV+S+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RAETGDADEQS 132
           R E GDADEQS
Sbjct: 121 RGEIGDADEQS 131

[Close]

BLAST of Carg10897 vs. ExPASy TrEMBL
Match: A0A6J1CNW3 (uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC111012990 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 120/131 (91.60%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEIVEGV+S+NLG D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIAT
Sbjct: 1   MEEIVEGVNSLNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGL VEKKI TSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLVVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RAETGDADEQS 132
           R +TGD DEQS
Sbjct: 121 RGDTGDTDEQS 131

[Close]

BLAST of Carg10897 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 192.2 bits (487), Expect = 2.6e-49
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEI EGV++MNL  D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+  VELSALGMAIAT
Sbjct: 1   MEEITEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKIEI L K+E FDELMAAA EE
Sbjct: 61  VVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEE 120

Query: 121 RAETGDADEQS 132
           + E  +A EQ+
Sbjct: 121 K-EAAEAQEQN 130

[Close]

BLAST of Carg10897 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 187.2 bits (474), Expect = 8.5e-48
Identity = 104/131 (79.39%), Postives = 115/131 (87.79%), Query Frame = 0


Query: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60
           MEEI +GV++MNL +DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ++ VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120
           VVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAKIEI L K+E FDELMAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 121 RAETGDADEQS 132
           + E  +A  Q+
Sbjct: 121 K-EDAEAQVQN 130

[Close]

BLAST of Carg10897 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-35
Identity = 75/116 (64.66%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 16  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAV 75
           +++KKNRIQVSNTKKPLFFYVNLAKRY+QQH+ VELSALGMAI TVVT++EILKNNGLA 
Sbjct: 33  ETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLAT 92

Query: 76  EKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEERAETGDADEQS 132
           EKK+ TSTV +KD+++G+ VQKAKIEI+LGK++ FD L+      +    +A  ++
Sbjct: 93  EKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEEEASAET 148

The following BLAST results are available for this feature:

BLAST of Carg10897 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599408.1	6.3e-61	100.00	hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022946216.1	6.3e-61	100.00	uncharacterized protein At2g34160-like [Cucurbita moschata] >KAG7030395.1 hypoth...	[more]
XP_023547053.1	1.8e-60	99.24	uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo]	[more]
XP_022999418.1	1.8e-60	99.24	uncharacterized protein At2g34160-like [Cucurbita maxima]	[more]
XP_008457716.1	2.7e-56	93.89	PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >KAA0061596.1 D...	[more]

BLAST of Carg10897 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	1.2e-46	79.39	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of Carg10897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G312	3.0e-61	100.00	uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1KJN4	8.8e-61	99.24	uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC1114937...	[more]
A0A5D3BH52	1.3e-56	93.89	DNA/RNA-binding protein Alba-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3C651	1.3e-56	93.89	uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103497344 P...	[more]
A0A6J1CNW3	1.1e-55	91.60	uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Carg10897 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29250.1	2.6e-49	81.68	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	8.5e-48	79.39	Alba DNA/RNA-binding protein	[more]
AT3G04620.1	1.7e-35	64.66	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 21..83 e-value: 2.1E-13 score: 49.9
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 19..130 e-value: 4.4E-56 score: 189.7
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 20..115
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..131 e-value: 7.3E-61 score: 202.5
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 1..131
None	No IPR available	PANTHER	PTHR31947:SF32	SUBFAMILY NOT NAMED	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10897-RA	Carg10897-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding