Carg10860 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10860
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein NUCLEAR FUSION DEFECTIVE 6
Location	Carg_Chr05: 11714730 .. 11719907 (-)
RNA-Seq Expression	Carg10860
Synteny	Carg10860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTTAAGGGCAGTCTCTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAACAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGGCTTGTCAATCTCAGCCCTCTGCAGCTTCTACATCGCGTGTTTCTTGCACTTCGCGGTGAGACTTGTCTCTTTTCTCCATTTCCAATCTCATTTGTCATTTCATCAAATAATCATTACAGAAATGGATTCGGTTCAATTCCTTACTATGGAATAGATTTTTGCAATAGGTTACCATTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCTGAGCATTGAATCTCAAGGATGGGGGCTGGTTCCTCAGGGTATGTTCTTGCACTTGATTCTTGTGAATGCTAATGATTCTCCTTAATTGTTTTTGCTCGAGGAATGTTGCTAAGGAAGTGTTCCGAATATCCGTTTGTTTGTTCGCACTTCATAGATTTTTTTCTCTCTTAAATAATGTCGGATATTTTTTAGTATCTGTTCATAGTTCGAATCAAGTTCAATGCACATGTCTTGCTGAATTCCAGTACGATTGAATTAATCGTGGATATTTAGCGACGTTGCTGATTGCCTGTACTACTAGAATTTCCGTCACCTTTGAATTGCGATTAGAGTCATATAGGTGAAAATGATAGATAGAAAACATCACTTTGACTGGTGTATGAAGGAAACAAGCGGAATGATGCAATAAATTTCAGTATTTGAATGAAAGTTTAATATAATTGATCATTTATAAGAAGTAGCCTTAGTCGACTGCAGAATTTTAGCATTAATCTACTTTTTTTACAACTTGGCTGATGCAGTTTATGTTTATGTGTTGACTCTTCTTATTTATCACCAAGCTTCAAAATATACTCGAGTTGCGTTCAACTAGTTGATGATAGAGAATTTTTCCGATCTTCAATTTATGTAACCTTAAAAAAGAAAAGAAAAATTGTGTTGCACATCTCAATAGGAGTGTTATCATATCATTTTTATTCTATCTATTATTACCGCTGTCTAAGATGTGAGTGTATACCCATACTAATTTATGCACATCTCAGTGATTTTCAATGGAGTATCACTTGATCCTACAATCCATAGAACTATATCTCTTCAAATTTGTGTGCGCGGGGACGTATAATTCTTGGTTAATTGGGAGGTACTCTTAATCCATGTAAAATTCTCCTGTGTACAAGCACCTCCTTTTCTTCCTCAGATGTTGTCACATCTCATGGTGACAACAAAAATACCCGAAGAAAGTAATCTATTTGACATGTTTTGTTCTTTGTAAAAAAGTAAACATTACTAACTTCCAATTGCAAGAAGTTTGTGGCATCATTGTTTATTACCCCTCCTACACCTGAACCCTCATAATGTGTGCTTGTTTTGGGTGGCTAGGATGACAGTGACTCGTTGTTCATTCTCTGCGGGTTCACTGGGAAGTTTTGGGGATTGTTATTTGTTTTTATGGATTTGGGTAGCTCTTCCAAAACCTGAGTTGTACGTCAGATGCTACTTTCAAAATCCAGAAACCAGGCTAAATCTATCTAGACTGATGCTATATTGCTAATCTTTTTAAGGCTTAAAAAGTGAAAAAAGTAGGAATTTTCACGATAATCAAGATAATCAATTTTTGGCATCTTTCTTGGCTCTTAAACTTTGGTTAGATGTCTAGGACTCTTATCTCCTCCTTTATTCAGAGTTTATTCTGAAGAAATATCTCTTAATTCCCCAAAAGAAACACAAATCGAAACTTTCGTTCTTGAGAACAAGAAGAGTGTGAAAGTAGGGGGTAAAGAAAATCATTTCGGGGGTGTTTCAGGCATTGGTTTAGTATGTCTAGGGGTTTAAGTTAAAGGTTTGGGAAGTCGTTGGGATGCAGCTTTAGAAAGCATAGACTAAGAAAAACTTTGTGGGGTTATTGTTCAAACTCGATCGTTTCTCCAATAAATTCAGTTTTGGAAACTTGTCATCCTAAACATTGGTCAGGCTTGGGAAGCCAAACCGATACCTCAAAGGCCTCTTCACAGGTGTAGGGTTATTATCTTTGTTCTTTGGTCTCATAATAAGTTGTTACAAGTGTCTTCTGGCATTAACTTTTGCTAATTTCATTTATGGGAGAAAGTTATGGATGCAAGTTTATAGATCATCATTTTAAGTACTTTCCTGCACGACGATTCATTTGTTAGAAGATCCGTCTTTGACATTGTTTTGTCTTTCCTGCAGGTATTTCAATGCCTTTATGACGGCTTTACTTTGCAGTAAGTTGTTCTCTGTACTTCTCTGTTTGTTGACTATTAGGGTTTCTTTGTACTCTTAGCTCCCTACAAGAATATAAACCTTAATCATCGACTCTAAATTTCTTTTGTCCTAAATGTGGCTGAGGTTTAAAGTTACATTTCATCTTAGTAGTGATGAAATTCATTAAAGTGATTCAGCAGATACTTATTTGCTGGCATTTTACTCAAATGAAACAAGTTAATGTTGCAAGTGATTGATATACAAACTTTCATGATTGTAGGAGTTATTACCCTTGGAAAGGGCATGTTGGCATGCTGAATTTTATGATTAGATGTGTATGCATGACTTGAATGACATCTTGTTGCAATGCAATGATCTTGAATTCATTCTCCTAGACAAGTTCCTAGCCAAGTTCTATTGAAGTTTTAGGAATTCAGCTACATAGACATGTATTGGTTTTTAGGTTTAGCATGTATCGGTTTTTAGGTTTAGGTCTTTGAAAATTAAGCTTGTAAACACCACTTCCATTGTTTCATTGTTTTGTTTTTGTCACCGACTTTCTAGCCATATTTTCAAAATTTATGCCAAGTTTTTTTTAAAAAAAATTAAGCCCCATTTGACAATAACGATTTTGTTTTTAGTTTTTAGTTTTTGAAATTTATGCTTGTTTCCTTCCAATTTTTCTTACTATAATTCACCTTTTTTTAACAAAAAAGATTTGTATTTTAATGAAATTTCTAAAATAAAAACAACTTTTTAAACTATTTTTAAAATCTTGTGGAAGTAGTATTTATAAGCGTAATTTTTTTTTTTTTTTTTTGGTAAAGAAATTGTGATAAAACAACCACAATTTTCAACATTGGTAAATGAATGAAGTTCAAAATATATCCTCTTACTATGAAAAGGGCCTAAAAAATGAACAAAAAAATGAAATGTTAGATTAGCTTTCAAGTCAATACAACTAGAAAGAATGTACATATCAAATGCTCAAACCCCAAGGTTAAAAAATATATATATGTATGTATATATATATATATATAAAAGAAGAAAAAAAAAAAAAAAAAAAAAAACTTCTATTTCCTTCGCTAGAAGGAAGCCCTACAAAAGAATAGGTTAATAGAATCCTACATGGGTCTGAATTTTTACGTTGGGTGAAACTTCAAAATATCACACTATATCCCTTCTTTTCAGCTTCTCCCTTTTTACCTTTTCTTACCTCTCCTTTTTTACCTCTTTCCTTCAGTTTCTACCTTTTGATTAATGGCGAGCTGTTGGACTTCTTAAAGCACTTAAATTCTCAAGCTTCTCTAAGTAAGACAATTTTTTTGGTGTTACAACATCAGCAGCTTTGCTCATAAGGGTCACGTCTTCTTTACAGCAACTCTCCTTAGTGGACAATGATTCTGTATTAAGTTTATCATTGTCATCGTCCCAACCCATGAAATCTGAGAGTGTCTTTGAAGGTGGGGAGCCATTGGGACTCAGCTGCTTCTCTGTATCCACAGAAACGTTCTCAAACGACTGCTTGGTCAACAATTCTCGAGCAACAGTGTCTGCATAAAGTACATCCTCAATCCTGGACATGATATTAAAAGCCAAGCTTTCTATCACCCTTGAATAGCTTTCTAGGATTGCTTGTCCTACATCCTGTGAACAATCACCAAAGATGAAGATCAATGGATTGCTGATGTTTCAACATTTTAGCAAAAGCAAGGCTAAAGTACGAAAATATCTCCTAACTTTGCCCTTTTTAGAAACGATAATCCTCTTCTATGAACATTTGAAACTATCCTTGAAATAGAAATTAGATAGGATATTGGACAAAGATTAGGACCTGGAACCCGAACTCCGGCACATTGTCCCAGGGTAAAGTTTCTACTTCACAAGTAGTTTTGAAAGAAAGGGCAAAGTTCAAGGGCTTTTTAGCCGAGACAGTTATCGAAGCGTTGATTTTTACCTTGTTATGTTGGATTTTGGATACATCAAGAGCAGATTGAGAAATCCCTGGAAATCTTTGTTTAATTAAGAACAAGATGCTTTCAACTCTCTCTTCAAAAATCTCTCTTTTCTCAAAGCTCACTGCTGAACCCCATGTGGACTTTCCATCCTTTTGATGCATCTTCCTCGTCCATATCACAATTGAGGCCTCAATCCTGTTCTTAAGATCAATCACTTTGTATTCTGTTGACAAGTCCATTGATTTTAGGAATTCCTCTGGATTAAAATAATCATCTGTTATGCTCCTGTAGATTGCATCTCCCAAGCTTGTTTTTCCATTCTACAAAAGACACTCACAATTCAAGGTCAGCTTCAAATTTCATATAACCAATCATCCTAAGCTAAGAAGCACGGATACGGACACGAGACACAGATACGACACGACCCAAACACAGTGAAATGTCATTTCTTGAAAATCTAGGTCACGAACACGACATTTACTATATCATTCCTAAAAACATGATAAATTTATATGCTAACACATGAGTTTGATTTATGCTTGCTAAATTAGTGTCCGATATATGCCTAACAAGTATCTTATACATATTAGATCACAAGTTCTTAGATCACAAGTTTTTTCTCTTACCTTTGGGAGAGACTCAATGTAGCTTTCTGGAACTTCCATTTCTGTCAAGACCTGAGCATTTATGGCCATGGCTGCTTTTAGAATTTGGTTCACAGATTCCTTCTGAAACAGCAGCCATTTTCGAGTAACTTCGGATAGCCCATTCGGAGGCACCTTAACTGCTGGTAGCCACCATTTGTCTCCATCCCTCTGTGTATAATCTGTAATAGATTCATCATCTCTTGATACATACCAAAATTCATCTAGTTTACCAAATTGATCCAGGTAACCCTGCCAATGATATTCAAGTGAGAACTGGA

mRNA sequence

ATGGCGTCCTTAAGGGCAGTCTCTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAACAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGGCTTGTCAATCTCAGCCCTCTGCAGCTTCTACATCGCGTGTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCTGAGCATTGAATCTCAAGGATGGGGGCTGGTTCCTCAGGGTAACCCTGCCAATGATATTCAAGTGAGAACTGGA

Coding sequence (CDS)

ATGGCGTCCTTAAGGGCAGTCTCTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAACAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGGCTTGTCAATCTCAGCCCTCTGCAGCTTCTACATCGCGTGTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCTGAGCATTGAATCTCAAGGATGGGGGCTGGTTCCTCAGGGTAACCCTGCCAATGATATTCAAGTGAGAACTGGA

Protein sequence

MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDIQVRTG

Homology

[Close]

BLAST of Carg10860 vs. NCBI nr
Match: KAG7030432.1 (hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 6.6e-45
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
           MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS
Sbjct: 1   MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDIQVRTG 106
           SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDIQVRTG
Sbjct: 61  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDIQVRTG 105

[Close]

BLAST of Carg10860 vs. NCBI nr
Match: KAG6599455.1 (hypothetical protein SDJN03_09233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-38
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1   MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
           MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS
Sbjct: 16  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 75

Query: 61  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
           SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 76  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 109

[Close]

BLAST of Carg10860 vs. NCBI nr
Match: XP_022946234.1 (uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946235.1 uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946236.1 uncharacterized protein LOC111450380 [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-38
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 94

[Close]

BLAST of Carg10860 vs. NCBI nr
Match: XP_023547330.1 (uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547332.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-37
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKS+CQSQPSAASTSRVSCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 94

[Close]

BLAST of Carg10860 vs. NCBI nr
Match: XP_022999549.1 (uncharacterized protein LOC111493876 [Cucurbita maxima] >XP_022999550.1 uncharacterized protein LOC111493876 [Cucurbita maxima] >XP_022999551.1 uncharacterized protein LOC111493876 [Cucurbita maxima])

HSP 1 Score: 164.5 bits (415), Expect = 5.1e-37
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKS+CQSQPSAAS SRVSCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASISRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 94

[Close]

BLAST of Carg10860 vs. ExPASy TrEMBL
Match: A0A6J1G399 (uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC111450380 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 94

[Close]

BLAST of Carg10860 vs. ExPASy TrEMBL
Match: A0A6J1KDE2 (uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.4e-37
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKS+CQSQPSAAS SRVSCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASISRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 94

[Close]

BLAST of Carg10860 vs. ExPASy TrEMBL
Match: A0A0A0LKT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.2e-33
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASL+AVSRLSSRLQSLAPK NKRS SSEL  FKS CQSQPSAASTSR+ CTSRLP+ELS
Sbjct: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG 94

[Close]

BLAST of Carg10860 vs. ExPASy TrEMBL
Match: A0A6J1DYI4 (uncharacterized protein LOC111024217 OS=Momordica charantia OX=3673 GN=LOC111024217 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASL+AVSRLSSRL SLAPKL K+ PSSE SP KS+CQS+PSAASTSR+SCTSRLPLELS
Sbjct: 1  MASLKAVSRLSSRLHSLAPKLKKKFPSSEPSPLKSSCQSKPSAASTSRISCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSL+IES+GWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESRGWGLVPQG 94

[Close]

BLAST of Carg10860 vs. ExPASy TrEMBL
Match: A0A5A7V7B3 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00330 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASL+AVSRLSSRLQSL+PK NKRS SSEL   KS CQSQPSAASTSR+ CTSRLP+ELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG 94

[Close]

BLAST of Carg10860 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-16
Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLE 60
          MAS   + RLSS++ SL  KL+K +   SS  SP KS   S PS+A TSR++ + RLP+E
Sbjct: 1  MASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKS---SSPSSA-TSRINQSFRLPVE 60

Query: 61 LSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          LS   S++PLHSAIA+ARLISSLS+ES+ WGLVPQG
Sbjct: 61 LSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQG 92

[Close]

BLAST of Carg10860 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-16
Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLE 60
          MAS   + RLSS++ SL  KL+K +   SS  SP KS   S PS+A TSR++ + RLP+E
Sbjct: 1  MASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKS---SSPSSA-TSRINQSFRLPVE 60

Query: 61 LSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          LS   S++PLHSAIA+ARLISSLS+ES+ WGLVPQG
Sbjct: 61 LSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQG 92

[Close]

BLAST of Carg10860 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 3.4e-15
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLE 60
          MAS R + R SSRL+SL   L+ ++   SS  SP KSA    PS+A++ R++ +SRLP+E
Sbjct: 1  MASSRVLGRFSSRLKSLCQNLSNKNANVSSLPSPIKSA---SPSSATSCRLNRSSRLPVE 60

Query: 61 LSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          LS   S++PLHSAIA++RL+SSLS+ES+ WGLVPQG
Sbjct: 61 LS---SMIPLHSAIASSRLVSSLSVESKIWGLVPQG 90

[Close]

BLAST of Carg10860 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 5.4e-05
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 2  ASLRAVSR-LSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 61
          ++L A SR L SR +++  K     P++  SPF S  QS P A         SR+   L 
Sbjct: 7  SALMAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRA---------SRVLSALG 66

Query: 62 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          S  +++PLHSA+A+ARL SS++ +S  W L+ QG
Sbjct: 67 SVETMIPLHSAVASARLRSSIAADSSCWSLLSQG 91

[Close]

BLAST of Carg10860 vs. TAIR 10
Match: AT4G39300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 2  ASLRAVSR-LSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 61
          ++L A SR L SR +++  K     P++  SPF S  QS P A         SR+   L 
Sbjct: 7  SALMAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRA---------SRVLSALG 66

Query: 62 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQ 94
          S  +++PLHSA+A+ARL SS++ +S  W L+ Q
Sbjct: 67 SVETMIPLHSAVASARLRSSIAADSSCWSLLSQ 90

The following BLAST results are available for this feature:

BLAST of Carg10860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030432.1	6.6e-45	100.00	hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599455.1	4.6e-38	100.00	hypothetical protein SDJN03_09233, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022946234.1	4.6e-38	100.00	uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946235.1 unchar...	[more]
XP_023547330.1	1.0e-37	98.94	uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331....	[more]
XP_022999549.1	5.1e-37	97.87	uncharacterized protein LOC111493876 [Cucurbita maxima] >XP_022999550.1 uncharac...	[more]

BLAST of Carg10860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G399	2.2e-38	100.00	uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC1114503...	[more]
A0A6J1KDE2	2.4e-37	97.87	uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876...	[more]
A0A0A0LKT5	6.2e-33	89.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1	[more]
A0A6J1DYI4	1.8e-32	87.23	uncharacterized protein LOC111024217 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7V7B3	1.2e-31	87.23	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of Carg10860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55205.1	8.9e-16	58.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G55205.2	8.9e-16	58.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13674.1	3.4e-15	55.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G39300.1	5.4e-05	39.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G39300.2	2.7e-04	38.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR33156:SF43	BNAANNG28360D PROTEIN	coord: 1..96
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10860-RA	Carg10860-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
molecular_function	GO:0016787	hydrolase activity