Carg10844 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10844
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr05: 11818464 .. 11823622 (+)
RNA-Seq Expression	Carg10844
Synteny	Carg10844

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAATCTCAATTTCGAGTGCTACAAGTTATTTCTTCTCTCTTGTTTCATATTTTTCTTGAACTGGCGAGCATAATCTAGCACTCAGATGATCTATTCGTATTTCAGAATCGGTAAAGAATGATTTCTCTATGAATACGGAGTCATTGAGTTTATTATCGATAGTGTTATTCTTGTCTCTGGTGGTGAGAATCGTAGTTCCCTATGCTATAGATCATATCTGCTTATTCTTCATATTCTCCTGGAACTGGAGATCTTTTCTAGCACTCCAAAGATCTTGTGGTTTTTTAAAGAATGATTTCTATATGGACTCGGAGTCATTAATTTCAATATTGCAGAAATTGCTAGTAATTCTTGCCGTCTTATTTAACCTTGTCATGGATTATTTTGATTATAAATTTGAGTTCCAAGTTTGTTTGGTCGGAACTGAAGTACTGTTAGTTGTGAGTAACTGTTCTTTCACAAAGAACTCTCAGAAATTGTATTAAACGAAAGTAAAATTTTGTAATAGTAAGGTTAGGTTTCAAGTTTTTTTATCTTCTTCTCCTACTTGAAAGCCGAGTTTATAGCTACATCAGGTTTCAAGTTTTTGAAGTTCTACTAGAGTCGATCAAGTTGTTTGGTAGCCTTTTTATTCTTCTTTTGTAATTTTTGTTAATTGCATTAATGTCTCAACTTACGGCTAGGTTAAATCAAGCTTTTGGCTGATGACTTTTTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGTTGAATTAACCATTTATTGGCCCTTCCTGATGTTTTTATTCTAGTATTCTCTAGATCTATTTGTAGATCAGAATTGTTAAAGATTGATCTCTGAATAAAATTTTGGAGTTATTAAGTTGAATACTAAAGGTTCTTGCCAGGGTTTCTGGCATTGTAATTTAGAATGGACAATGGTTTTTGACATTGTAAATTTGCAGTTGATTATCGAAATTTTGAATTTGTTTTCCTGGTTAGTTTGCTTGTTCAAGTACTGTAGTCTAGGACCGTATTGAGATAATATTAAATAAACAATGCTCGTAAATTAGTAGAGACGCATGCTAAATTTGTCATAGGTGACTTTCAAGTTTATAGTCACACTCACATGGTCACATTGGTTTCAAGTTCTGAAATTCTATGGAAGTGAATCAATGTGGTAGCCATGTAGTTGATAAATTTTCTCTTCTTCTTTTGTAATTTTATGGATTGTATCAATGTCCCAACCTCGGGCTAGTTTTATATCATGCTGGAAGCAAATGATTCTGTGAAATTGACCATTGGATTGGCCGAGCAGACTAACCCCTAGTGTCTACTCACTACTAAAACACAAATAATTTGAAGTTATTTATACATAAGCTACAACAGAAGCAGTTGGTTGAAACATTCTATGTAAATATTAAATAAGTTTAATTACATTTGAAATGTCAAAAAAGTTCGGTGTAAGGTAGTATTTCTTGAAATAAATAAACCTCCCAACCTAGTTTTACCTGTTTTTGCAAGTGAACTTGAAACACCTTTCCTCCTTTCATCTATAAGTTGAACCTTATTGGTCTGGGAAGTTTTCAGCTTCTATACTTCAATCAGAGTATAAACGGTTTCCATTTAAATTAAAGCCCCTTATTTGTAAGATAGATTTATTTCCTCTACTTTTCTGCTCTAGGAAACTCTGGTCTGGGTTAGTGGTATTTTAGATTTATTTCCTCTATTTGATATTTCATAGACTTTGCAGGTCCTATTAGGTAGCCAAAAATTATGGCGTCTCTGAAAGACCTGCTTCCTGCTGTAAAGTCAACAGCTGTGACACAGTACGATCACTCAAATGATCCATGGTTCAAGCAGCGGTTTAGTTCATCAGAAGCAGAGCAAACTTCTGTTGTTAAGGCTAATCCTGTACCACCTTACTTGAAGCGTAGTGGATTTATTCCTCGGAAAGTAGAGGATTTTGGAGATGGTGGTGCTTTCCCAGAGATTCACATTGCTCAATACCCACTCGACATGGGTAGAGACAAATCATCAAAGCCTGGATCAAAGATCCTTCCTGTGACGGTGGATGCCCATGGAAATGTTGCATATGATGCTATTGTAAAACAGAATGAAAATTCTAAAAAGATTGTTTATTCACAACATAAAGACCTCATTCCAAAGATCTTGAAAACTGATGAAGAGAATGATGAGGATGAAGAGATGCAGAAAGAGATTGAAGAAACAACCGAGGAAACGAAGTCTGCGCTTGAAAAGATAGTGAATGTAAGATTGAGTGCAGCTCAGCCTAAAAATGTAGCCAAGCAATCATCAGATTCAAAATTTATCAAGTATAAGCCATCTCAGCAATCAGCAGCTTTTAATTCAGGTGCCAAGGAGAGAATCATTAGAATGGTGGAAATGCCAGTAGATCCACTCGAGCCTCCAAAGTTCAAGCATAAGCGTGTTCCTAGAGCCTCGGGGTCTCCTCCTGTGCCAGTCATGCATTCCCCTCCTCGTCCTGTCACCGTGAAGGATCAACAGGATTGGAAGATTCCACCTTGTATTTCAAATTGGAAGAATCCGAAAGGTTATACAATCCCACTTGACAAGCGTCTTGCAGCTGATGGCAGAGGCCTTCAAGAAGTTCAAATCAACGATAATTTCGCAAAGCTATCTGAAGCACTGTATGTTGCAGAACAGAAAGCAAGAGAAGCAGTTGCAATGAGATCTAAGGTTCAGAAAGAAATGCTTATGAAGCAGAAGGAGAAGAAGGAATTGGAGCTTCGAGCCTTAGCTCAAAAGGCTCGGTCTGAGAGGACTGGTGCTGCACCTCCGCCTGCAGTTTCTTATCCATCTGAGAGGAGCACTGCAGATAGAGACACTTCTGAGATGAAAGAGGAGTTCGAGCATATTAGAGAAAAAGAGAAGGCTTTATCAAAGGAGACGAGGGAAGAAAGGGAAGAGCGGTTGCAGCGTGAGAAGATTCGTGAGGAACGACGTAGAGAGAGGGAAAGGGAAAGAAGGTTGGAAGCCAAAGATGCAGCAATGGGGAAGAAGAGTAAGATTACAAGAGATAGAGATCGTGATATTAGTGAGAAGGTTGCACTCGGAATGGCTTCGACCGGAGCAGGTAGAGAGGGAGAAGTTATGTATGATCAGAGGCTATTTAACCAAGATAAAGGAATGGACTCGGGATTTGCCAATGACGACCAGTACAATATATACGACAAGGGCTTATTTACCGCTCAGCCCACTCTCTCAACCCTTTACAGACCTAAAAAAGATGCCGATTCTGATATGTACGGAGGTGCTGACGAACAGTTAGACAAGATTATGAAGACTGATCGCTTCAAACCAGACAAGTCATTTTCAGGCACTGCAGAAAGGTCTGGACCTAGAGACAGACCGGTGGAGTTCGAAAGAGAAGTCGAAGAAGCCGATCCATTTGGACTGGATCAGTTCTTGACTGAAGTGAAGAAAGGTAAGAAAGCTATGGATAAAGTTGGCAGTGGTGGGACAATGAGAGCCAGTGGTGGTTCATCAACGCGAGACGGCTATGATGGTGGCTCCGGTAGAAGTCGCATTGGATTTGAAAGAGGGCATTAGAAGCTAAAAATCCAATCAGTTTTATTATATTGCTACTGGCATTAGAAGGTACCCTCCAAAAAGCACTTCTGAACTATGAGTAAGATATATTTGATTGCCATTTTACTCCATAATTTTATCTTGCTATGCTTTATTGCGTTGGAAAATCTTTAATTCGTTTGGATGGATTGAATTTTTCTTTGCGACAGGTGGAAAAGTTGGCATCCCGATCAGGAGGCGCACTCTTTTGGAGAAAATGGTGCCTTTGAGGTGACATTTTTACTTCTATTTAGATATTTCCAGTTGTTTTACATTATTTTCTCCCTTATTTCCTTTTTATTTTTGTTTGTTTGTTTTTTTTTTTTTTTTGCTAATTTGCAAAAAAAAAAAAAAAAAAAAAAAATTGCAATATTACTTAACCTCTCTTAAATGTTTCAAAACTATCCATTGAGCTGTTGGAGAAGGTTGAAATGGTGTGGAAATTTTCAATTTCTATTGAAAATATTAAAAAGAATTTTTCTATTTTAAGATAAGTTATGAAACGTTTTTGAAGTGAGTTATATTGCAACTTTCAATAGTATAAAGGTATTTTTTACCATATAGTTTTTTTTAATAGAAATTTCCGCGTGTACAATTTACTCTCCACTTATAGCCATGGATTTGCATGCAGAATCCGAACGCAATTTACTAATGCAAACTTCATGGACATTTGTCGGCCTTTTTAGTACTTTAAAGCTACAATTCCAATTTGTCCATTTTTTAACTTTCTTATTTAGGTATACTACTCTGCTTGAATCTAAGATTTGAATGTCAATATCTGTTTTGTGATATTCTTTCTCTATTGCTCTTCATTAACCTTGGATCTTGGATCTTCATTAACCGAAATCCATGGAACTGAGAAGAGAATAACCTTGGATCTTCTTTCTCTATTGCTCTTCATTAATCGAAATCCTTTGTTCGTAGGAAACTAACGAAGATCAACGGTCGTCACAGCCCATCTATCTGAAAATTATTTAAAAACACGTAGAAGGATATGAAAACCAGGGAATCATTGATTTTGGAGGGCGAAGATGCCGCCAGGTATTCCCATTCCCCTTCCCTCCCCCCCCCCCCCGCCCCCCCCCCCCCCGCAAAAAAAAGGTTTAAATCCTCCTTTGATTATTGATCTGTTATACCTATAATCGATTTTCAAATTTATGCTACAACATTTTTAATTTCTGTTTTTTGTTTTCTAAAATATAAGTTATTTGACTAATATTTGATAACAGTTTTCTGCTTATTTATTTTGAATAAAAACTGATTGTTTTTAAATTTCATGAAATTGTAATTTAAATCTAAAAACAAAAGACAAAGTTGTTAAGCCTTTGTTTGAAGTTATCATATTTCCAAAGAATTCCTAGTGTGTTTGTCATTTTTCTCCAAAATACATTGCATCTTTTTCAATCCTAACTTTTATTTTATATCGAAGTTAAGCTTTTGAGCTAAATCATATTTTCTTTTGAACGAACCTTTTTTAATCTCTTAACATTCCTTCTTATTTTATCACGATTTCAATTTTAGTAGATTACAAAACAGAAGGGTAAATCCTTTTTCATAA

mRNA sequence

ATGGTGAGAATCTCAATTTCGAGTGCTACAATTGAATTAACCATTTATTGGCCCTTCCTGATGTGGAAAAGTTGGCATCCCGATCAGGAGGCGCACTCTTTTGGAGAAAATGGTGCCTTTGAGAAGGATATGAAAACCAGGGAATCATTGATTTTGGAGGGCGAAGATGCCGCCAGATTACAAAACAGAAGGGTAAATCCTTTTTCATAA

Coding sequence (CDS)

ATGGTGAGAATCTCAATTTCGAGTGCTACAATTGAATTAACCATTTATTGGCCCTTCCTGATGTGGAAAAGTTGGCATCCCGATCAGGAGGCGCACTCTTTTGGAGAAAATGGTGCCTTTGAGAAGGATATGAAAACCAGGGAATCATTGATTTTGGAGGGCGAAGATGCCGCCAGATTACAAAACAGAAGGGTAAATCCTTTTTCATAA

Protein sequence

MVRISISSATIELTIYWPFLMWKSWHPDQEAHSFGENGAFEKDMKTRESLILEGEDAARLQNRRVNPFS

Homology

[Close]

BLAST of Carg10844 vs. NCBI nr
Match: KAG7030448.1 (hypothetical protein SDJN02_08795, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MVRISISSATIELTIYWPFLMWKSWHPDQEAHSFGENGAFEKDMKTRESLILEGEDAARL 60
          MVRISISSATIELTIYWPFLMWKSWHPDQEAHSFGENGAFEKDMKTRESLILEGEDAARL
Sbjct: 1  MVRISISSATIELTIYWPFLMWKSWHPDQEAHSFGENGAFEKDMKTRESLILEGEDAARL 60

Query: 61 QNRRVNPFS 70
          QNRRVNPFS
Sbjct: 61 QNRRVNPFS 69

The following BLAST results are available for this feature:

BLAST of Carg10844 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030448.1	2.1e-31	100.00	hypothetical protein SDJN02_08795, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg10844 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10844 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10844 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10844-RA	Carg10844-RA	mRNA