Carg10797 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10797
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pre-mRNA cleavage factor Im 25 kDa subunit
Location	Carg_Chr05: 12038287 .. 12043807 (-)
RNA-Seq Expression	Carg10797
Synteny	Carg10797

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAACATCCAGACCTATATTCTCTACTCCCACTCACTTTCCTCCTCTCTCTCCTCTCCATATTCGATTCTCTCTATCTCTCTCTGTTTTTCTGCAATCGGCCATGGGAGACGACGGACATGTAAATGCTATGGAGGACGATGAAGCTTCTGCCGCCGAGCAACGCGGAGGCATCGATATTTACCCTCTCAGAAACTACTTCTTTGGATCCAAAGAGGCTCTGCTTTTCAAGAACGAGGCCTTGGCTGTGTTGGAAAGAGGGATAGTGAAAGAGATAGGAATAGATGAGAATAGATAGAAGCTGCAGTGCTTTATTAATGTCTACGGACTTGATACCTACAAAGTTACACAATTCCAGTATTTATAGCTAATACACTGGACCAGAAATAGTAAATCATAGAAATCTAGATAAACTCAAATCTATTAACAATCTCCTAAAATCTTGGTAGTTTGAATATTTGAATCATATCTAACTACCCTAAATCATATCTTCATTTTGAATACTTTGAATCATATCTCAACATCCCCATGATTCAAAGTTGCAGATGTAAGTACAGAGCTTTTCTTCTGACAAGGCCTTTGTAAGTATGTCTGCTTTAACCCGTACATTGTCTGTCTCAGCTTGTATACCTTTGTTTCTTTGTCTTCCTTTATGAATCCCTCTGGCGGTCTTACATAAACCTCTTCTTGTAAATCTCCATAAAAATTTTCGTTTGGTAGGTCAACCATATCCCATGTTCCATCTTTCTTAACGGACTGCATCTCTACTGCCATGACTTTCTTCCCGTCTTCTTTTTCAGTTGCTTCTTCATAATTGATAGGGTCTGAAATAGTAAGAGCAAACTGACATGATGCATATATGTCAGCTAAAGATTTATACTTCTTTGGAGGTGTCTCATCTGAAAGTTCTTCAAGAGAGGAATTGTTGTTCAATGATTCTGAAGATAATGAATTTGACACACTTTGTGTTGCAGTGGATGCACTGGGAGGTGCACTGGAGTTGACCCTTGTCTCTTCATTTGGGGAAACTTCAACTGTAATCTTTTGCTGCTCCTGTTCTTTACTCCAATCCCAACTCACGTTTCATTAAAATATTACAATCCCTTCTAACTAAAAATCTTTTCACTAACGGGGTTGTATAGTTTATATGCCTTTGATTGAGTACAATAGCCAATGAAAATGCATTTTTTCAGATTTTTCATCAAGCTTTTGACGAGTTTGAGGATGTTTCAAAGCATAAGCAACACAACCAAAGATTCGTAAATGACTTACAGATGGTTTCCTTCCATGCCATGCTTCATAAGGAGTTCGATTTCATAACGCCTTTGTTGGTGAGATGTTTAATAGATAAACAGATGTTGCTACGGCTTCGGCCCAAAATTGGTTTGGAAGTCTCCTTGCTTGTAACATACTTCTTGCCATCTCCACAATAGTTCGATTTTTTCGTTCAGCGATTCCATTCTGTTCTGGAGTGTAGGGAGCTGTTAATTCCCTTTGGATGCCCTCTTCTTCACAAAAGAGATTGAAATCTTTAGATATGAACTCGCCACCTCTGTCTGTGCGAAGAACTTTAATGTGACAGCCACTTTGGTTCTCTACCATAGCTTTAAAAATCTGGAACTTCTGAAAAGTTTCTGACTTATGTTGTAGGAAGTAAACCCAGCTCATGCGACTATAGTCATCAACGAATAGTAAAAAGTATATACTTCCACCCAAGGACTTCGTTTGCATTGGCCCACATAAATCAGCATGAATTAGTTCTAGATAATGTGAAGCTCTTTTAGCTTTTCCAACAGGAAAGGACTTCCTAGTCTGCTTGCCATAAATGCATCCTTCACATAAATTAGTTGAGTCAATTTTTGGTAATCCGAAAACCATACCTTTATCCCTGAGTATTTTCAGGCCGTTCATATGAAGATGTCCATATCTGAGATGCCATAATGTTGAATCATCTTTCATGCTAGCAGTAAGAGCAAAATCCTCCATGTTAGAAACATCAAGTGGAAACATCTTATTTGAAGTCATGGCAATTTCAACTTTATGGCCTGATTTCTTATCTGTGATGACACATGTGTTATCATCAAATAGAACTGAGTGTCCTCTGGTCATCAATTGTCCAACACTCAATAAATTGTACCCTAAATCAGGTACAAATTGAACATTATCTAATTGTTTTATCTTACCGTGACTGGTTTCGACTTTCACTGTACCTTTTCCTTCAACTTGCATCTCTTTTGTATTTCCAAGTTGCACCTTAATCTTTTGCGTCTCATCAAGCTCTTTGAATAAGGATTTGGTGCCTGTCATATGGTTCGAGCATCCGCTATCAACAAACCATAAGCTACCTTTTTCCGGATTAGTATCCATGCACGCCACAAACAACTTATCTTCTTCTTCTTCATTCTCTGCTTCAAAATTCATTTGTTGATTTTTATACCAACAATCAGATTTTGTGTGACCATACCTTCTACAATGGTAACATTGTATGACATTCCTTTGTTCATTGAATTGTCTCTGTCCACCACTTCTCCAACTGTTATCACGACCACCATGGAAGTTGCGAAATCCTCCTCTTCCACGACTTCTACCTGCTAAATGAATATTTTCTCTTTCGTTATTGGTTGTCTCCTTCACTTGTAGTGCCTTTTCTTCGTTTCTTTCTGATGCTCTACTGATTCTTGCCTCATGAGCCTGAAGCGAGCCCATCAGTTCATCAACGGAGAGTATGGATAGATCCTTAGCTTCTTCTATGGCGGCCACCACATGGTCAAACTTTGGAGTCAAGCTTCTCAACACCTTTGCAACAATTGTTTCGTTTGAAATTTTCTCTCCATAGGTACGCATCTGACTGACTATTGCCATTGATCTTGACAAAAAATCAGCAATTGATTCGCCATTCGTCATGAGTAGAGTTTCAAAATCACGTCTTAGAGATTGCAATTTCACTGTCATGACCTTTGAGTCTCCTAGAAACTCCTTCCGTAGAATTGACCATGCCTGCTTTGATGTGGTTGCTGCTGCAATTCGTGAAAAAATAGTCTCATGAACTGCTTGTTGAATAATGAATAGAGCCTTGGCATCGTTTTTCTTGGTTTCTCTCAGTCTCTCCTTTTCTTCTATTGTGGGTTCTAATACATCAGCAAACCCGTGCTCCACCAAGTCCCATAGCTCCTGCGATCTGAGCAAGGTCTTCATCTTGATGCTCCACCACTCATATTTCTCACCATTAAAGATTGGTAACAACGGTGCAGAGGAAGAAAAACCAGCTACTGCCATTTTTGTTTTGTGAAAGAAAATAATCACTCGCCCTCGTGTCGAACGAACTTGGCTCTGATACCACAATTGTTGGAAAGAGGGATAGTGAAAGAGATAGGAATAGATGAGAATAGATAGAAGCTGCAGTGCTTTATTAATGTCTACGGACTTGATACCTACAGAGTTACACAATTCCAGTATTTATAGCTAATACACTGGACCAGAAATAGTAAATCATAGAAATCTAGATAAACTCAAATCTATTAACAATCTCCTAAAATCTTGGTAGTTTGAATATTTGAATCATATCTAACTACCCTAAATCATATCTTCATTTTGAATACTTTGAATCATATCTCAACAGGCTGATCGCGTCCAGAGGATGAATTCCAAGTATCTATTCTCCCTTTAATCTCTTCACTACACTGCCTGTTTTCTGTTTACGTCCTTCAATTTGTCTAATCTGTTTTCTCGCCTGATTCTTTTGCAGCTATGCCGCTTACGGATTGAGAACTTATGTCGGAGCAGTTTTGCTGGTTCGTTCCTTCTTCATTCACAATGCTTGTATTTTTGTTGCTTTAATTCACTTCTATTTCACCAATCTTTTGGTTCTTGCTTATCGATTTGTTTAAGCATCTAGAATTTCTTACTGGCTCTGTTGATCTCATTACTTTATTCCATTTTGGGAGAAATCTTCTCATTGAATCTGAATTCAGGAAGCTTTTCTGCTATAAAATTTATAAATGAACATTTCATCTTGCGATCAGAAACAGTGCTTAGTTGCTGAATTAGTTTCGAACCCGCACGTTGTTTCTCAAATTAGGTTGAACTATTTAAACATCCTCATTTGTTGCTATTGCGATTACGAAATTCAATTGTCAAGCTTCCTGGTGGTCGCCTAAGGCCTAATGAATCAGGTAACTGTGTGCTGTGAATCTATTCTGCAGCTGTGTTTGTGTAACATAGTTAAGCTGATGAATATTTGATCATGGTGGATGATCTCAATTTACAGATCTTGATGGTCTGAGACGAAAGCTGTCAAGCAAGCTATCTGCCATTGGAGCCTCTGATGCATCTGATTGGGAGGTACTGCAGTTTCCAAATCTGTTCATTTGATTTGAATGATTGAATTTGAAGTTCTCTTCTTTTAACGTTTAGATCGGCGAGTGCCTTGGGATGTGGTGGAGGCCTGACTTTGAAACCTTTGATCCACACTTGTCCAGTAATGTAAAAGGCGCCAAGGTAGTCATTGGGACACTGGCTACTTCCTTTAAGCCATGGCTTTTCCTGTAACTCACTCACTACCTGATGCAGGAGTGCACTAAACTCTTCCTGGTCAAGCTGCCGGAGAATCGAGAATTCTTCGTGCCAAAGAACCTCAAGTTGATAGCAGTTCCTTTATGCCAGATTCAAAAAAGCCATGAGGTATACTTATCAACACACTTTATGGAAGTCCAATTTATCACGTTTGCAAATCTTAGTTTTTCCTTGAAAGATTGAAAGAAAAAGGAATGACGGTTCAATTTTGTTGGGGAAATTCTTGAAATAAATCTCTATTGGGTTCATAGGGCATTAGGTCGGATTAGGATTTTTTAAAATGGAATAGTAAACTTTTTCAACTTAATCCATCTTTATTAGATATTGATCCTAACCCAACTAACTTGGTTTAGGTGGTTCTAGTTTAGATCATTTATTCTTTTTTTTTTTTACTTAATTCTTAGAACATTGATTTTGAATTTAGATTTACAACTTAATTTCAATATATTTTTTGAAAAATGAGAATGATTAATGTGAAAATAGTTATGAAACTAAATAAAATTAAAAAATATATAGGTATATAATTGTATCATAAGTAAATTTTTAATGAACTTATTACCGGATCTAAATTATATGAGTTGGGTTGAATTATTAGGTTTATTTGGGTCATTGATTTTTTTTAAGCACGCTTAATTGTTGAATTATAGTAAGGCGCACTAGTCAACTACGTGTCAATTCTTTGATCTTGTAGACGTACGGGCCAGTCATATCGAGCATTCCACAGCTGCTTTCTAAGTTCTCCTTCAACATCATTGGAACCTAAGAATATTTATGAGTGCATTATAGAGGTGTGAGGTAAGTTTGTATGAATGTTTGAGAGATCCTTTTTAAAACATGCACATAGACGATGGTGATGGTTTTGTTAAGCATAAAGATAACAGTCATATAGTTCCCACATTGTTACTTCACAACTTGAGTTCTAAGGAATGCTAAAACTAGACGATTGCTT

mRNA sequence

TCAAACATCCAGACCTATATTCTCTACTCCCACTCACTTTCCTCCTCTCTCTCCTCTCCATATTCGATTCTCTCTATCTCTCTCTGTTTTTCTGCAATCGGCCATGGGAGACGACGGACATGTAAATGCTATGGAGGACGATGAAGCTTCTGCCGCCGAGCAACGCGGAGGCATCGATATTTACCCTCTCAGAAACTACTTCTTTGGATCCAAAGAGGCTCTGCTTTTCAAGAACGAGGCCTTGGGCTGATCGCGTCCAGAGGATGAATTCCAACTATGCCGCTTACGGATTGAGAACTTATGTCGGAGCAGTTTTGCTGGTTGAACTATTTAAACATCCTCATTTGTTGCTATTGCGATTACGAAATTCAATTGTCAAGCTTCCTGGTGGTCGCCTAAGGCCTAATGAATCAGATCTTGATGGTCTGAGACGAAAGCTGTCAAGCAAGCTATCTGCCATTGGAGCCTCTGATGCATCTGATTGGGAGATCGGCGAGTGCCTTGGGATGTGGTGGAGGCCTGACTTTGAAACCTTTGATCCACACTTGTCCAGTAATGTAAAAGGCGCCAAGGAGTGCACTAAACTCTTCCTGGTCAAGCTGCCGGAGAATCGAGAATTCTTCGTGCCAAAGAACCTCAAGTTGATAGCAGTTCCTTTATGCCAGATTCAAAAAAGCCATGAGACGTACGGGCCAGTCATATCGAGCATTCCACAGCTGCTTTCTAAGTTCTCCTTCAACATCATTGGAACCTAAGAATATTTATGAGTGCATTATAGAGGTGTGAGGTAAGTTTGTATGAATGTTTGAGAGATCCTTTTTAAAACATGCACATAGACGATGGTGATGGTTTTGTTAAGCATAAAGATAACAGTCATATAGTTCCCACATTGTTACTTCACAACTTGAGTTCTAAGGAATGCTAAAACTAGACGATTGCTT

Coding sequence (CDS)

ATGCTATGGAGGACGATGAAGCTTCTGCCGCCGAGCAACGCGGAGGCATCGATATTTACCCTCTCAGAAACTACTTCTTTGGATCCAAAGAGGCTCTGCTTTTCAAGAACGAGGCCTTGGGCTGATCGCGTCCAGAGGATGAATTCCAACTATGCCGCTTACGGATTGAGAACTTATGTCGGAGCAGTTTTGCTGGTTGAACTATTTAAACATCCTCATTTGTTGCTATTGCGATTACGAAATTCAATTGTCAAGCTTCCTGGTGGTCGCCTAAGGCCTAATGAATCAGATCTTGATGGTCTGAGACGAAAGCTGTCAAGCAAGCTATCTGCCATTGGAGCCTCTGATGCATCTGATTGGGAGATCGGCGAGTGCCTTGGGATGTGGTGGAGGCCTGACTTTGAAACCTTTGATCCACACTTGTCCAGTAATGTAAAAGGCGCCAAGGAGTGCACTAAACTCTTCCTGGTCAAGCTGCCGGAGAATCGAGAATTCTTCGTGCCAAAGAACCTCAAGTTGATAGCAGTTCCTTTATGCCAGATTCAAAAAAGCCATGAGACGTACGGGCCAGTCATATCGAGCATTCCACAGCTGCTTTCTAAGTTCTCCTTCAACATCATTGGAACCTAA

Protein sequence

MLWRTMKLLPPSNAEASIFTLSETTSLDPKRLCFSRTRPWADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT

Homology

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BLAST of Carg10797 vs. NCBI nr
Match: KAG7030495.1 (Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 427.6 bits (1098), Expect = 6.4e-116
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MLWRTMKLLPPSNAEASIFTLSETTSLDPKRLCFSRTRPWADRVQRMNSNYAAYGLRTYV 60
           MLWRTMKLLPPSNAEASIFTLSETTSLDPKRLCFSRTRPWADRVQRMNSNYAAYGLRTYV
Sbjct: 1   MLWRTMKLLPPSNAEASIFTLSETTSLDPKRLCFSRTRPWADRVQRMNSNYAAYGLRTYV 60

Query: 61  GAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDGLRRKLSSKLSAIGASDASDW 120
           GAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDGLRRKLSSKLSAIGASDASDW
Sbjct: 61  GAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDGLRRKLSSKLSAIGASDASDW 120

Query: 121 EIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQ 180
           EIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQ
Sbjct: 121 EIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQ 180

Query: 181 IQKSHETYGPVISSIPQLLSKFSFNIIGT 210
           IQKSHETYGPVISSIPQLLSKFSFNIIGT
Sbjct: 181 IQKSHETYGPVISSIPQLLSKFSFNIIGT 209

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BLAST of Carg10797 vs. NCBI nr
Match: KAG6599518.1 (Pre-mRNA cleavage factor Im 25 kDa subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 346.3 bits (887), Expect = 1.9e-91
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG
Sbjct: 48  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 107

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP 160
           LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP
Sbjct: 108 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP 167

Query: 161 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 210
           ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT
Sbjct: 168 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 216

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BLAST of Carg10797 vs. NCBI nr
Match: XP_022946691.1 (pre-mRNA cleavage factor Im 25 kDa subunit 1-like [Cucurbita moschata])

HSP 1 Score: 344.4 bits (882), Expect = 7.1e-91
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSI KLPGGRLRPNESDLDG
Sbjct: 48  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDG 107

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP 160
           LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP
Sbjct: 108 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP 167

Query: 161 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 210
           ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT
Sbjct: 168 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 216

[Close]

BLAST of Carg10797 vs. NCBI nr
Match: XP_022999530.1 (pre-mRNA cleavage factor Im 25 kDa subunit 1-like [Cucurbita maxima])

HSP 1 Score: 342.4 bits (877), Expect = 2.7e-90
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIV+LPGGRLRPNESDLDG
Sbjct: 48  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVQLPGGRLRPNESDLDG 107

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP 160
           LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLV LP
Sbjct: 108 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVMLP 167

Query: 161 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 210
           ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT
Sbjct: 168 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 216

[Close]

BLAST of Carg10797 vs. NCBI nr
Match: XP_023545701.1 (pre-mRNA cleavage factor Im 25 kDa subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.9 bits (842), Expect = 3.1e-86
Identity = 161/169 (95.27%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPG   R   +DLDG
Sbjct: 48  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGXHKRSQFTDLDG 107

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP 160
           LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP
Sbjct: 108 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP 167

Query: 161 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 210
           ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISS+PQLLSKFSFNIIGT
Sbjct: 168 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSLPQLLSKFSFNIIGT 216

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BLAST of Carg10797 vs. ExPASy Swiss-Prot
Match: Q94AF0 (Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CFIS1 PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.3e-60
Identity = 111/168 (66.07%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           +DRV R+ SNYAA+GLRT V AVLLVELFKHPH+LLL+ RNSI KLPGGRLRP ESD++G
Sbjct: 53  SDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEG 112

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKL 160
           L+RKL+SKLS       S +E+GEC+GMWWRP+FET   P L  N+K  KECTKLFLV+L
Sbjct: 113 LKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFETLMYPFLPPNIKHPKECTKLFLVRL 172

Query: 161 PENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNII 208
           P +++F VPKN KL+AVPLCQ+ ++ +TYGP++S IP+LLSKFSFN++
Sbjct: 173 PVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQIPKLLSKFSFNMM 220

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BLAST of Carg10797 vs. ExPASy Swiss-Prot
Match: Q8GXS3 (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-45
Identity = 87/170 (51.18%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           ADR+ RM  NY   G+RT V  +LLV+   HPH+LLL++ N+  KLPGGRL+P E++ DG
Sbjct: 31  ADRLARMKINYMKEGMRTSVEGILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEADG 90

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKL 160
           L+RKL+SKL    A+   DW +GEC+  WWRP+FET   P+   ++   KEC +L++V L
Sbjct: 91  LKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFETMMYPYCPPHITKPKECKRLYIVHL 150

Query: 161 PENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 210
            E   F VPKNLKL+AVPL ++  + + YGPVIS+IPQ LS+F FN+I +
Sbjct: 151 SEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of Carg10797 vs. ExPASy Swiss-Prot
Match: Q55E68 (Cleavage and polyadenylation specificity factor subunit 5 OS=Dictyostelium discoideum OX=44689 GN=nudt21 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.8e-35
Identity = 77/165 (46.67%), Postives = 111/165 (67.27%), Query Frame = 0


Query: 43  RVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDGLR 102
           ++ R+  +Y   GLR  V  ++++    HPH+LLL+  N+  KLPGG+L+P E+++DGL 
Sbjct: 32  KLARLKDSYEKEGLRKAVEGIIIIHDHGHPHILLLQ-DNNYFKLPGGKLKPGENEIDGLI 91

Query: 103 RKLSSKLSAIG--ASDASDWEIGECLGMWWRPDFE-TFDPHLSSNVKGAKECTKLFLVKL 162
           RKL+ KLS  G   SDA  WEIG+ +  WWRP+FE +  P++ S++   KEC KLF+V L
Sbjct: 92  RKLTKKLSPTGTPVSDA-PWEIGDHVSTWWRPNFEPSLFPYIPSHITKPKECKKLFVVTL 151

Query: 163 PENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSF 205
           PE  +F V  NL LIAV L +I  + + YG VISSIP L+S+++F
Sbjct: 152 PEKCKFAVSNNLSLIAVSLYEIYNNSQRYGAVISSIPALISRYTF 194

[Close]

BLAST of Carg10797 vs. ExPASy Swiss-Prot
Match: Q7T3C6 (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955 GN=nudt21 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.3e-34
Identity = 80/196 (40.82%), Postives = 114/196 (58.16%), Query Frame = 0


Query: 20  TLSETTSLDP--------KRLCFSRTRPWADRVQRMNSNYAAYGLRTYVGAVLLVELFKH 79
           TL  T +L P        K   + +    A R QRM   +   G+R  V  VL+V   + 
Sbjct: 33  TLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRL 92

Query: 80  PHLLLLRLRNSIVKLPGGRLRPNESDLDGLRRKLSSKLSAIGASDA--SDWEIGECLGMW 139
           PH+LLL+L  +  KLPGG L P E +++GL+R ++     +G  D    DW I +C+G W
Sbjct: 93  PHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMT---EILGRQDGVKQDWVIDDCIGNW 152

Query: 140 WRPDFETFD-PHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETY 199
           WRP+FE    P++ +++   KE  KLFLV+L E   F VPKN KL+A PL ++  +   Y
Sbjct: 153 WRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGY 212

Query: 200 GPVISSIPQLLSKFSF 205
           GP+ISS+PQLLS+F+F
Sbjct: 213 GPIISSLPQLLSRFNF 225

[Close]

BLAST of Carg10797 vs. ExPASy Swiss-Prot
Match: Q3ZCA2 (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 80/196 (40.82%), Postives = 114/196 (58.16%), Query Frame = 0


Query: 20  TLSETTSLDP--------KRLCFSRTRPWADRVQRMNSNYAAYGLRTYVGAVLLVELFKH 79
           TL  T +L P        K   + +    A R QRM   +   G+R  V  VL+V   + 
Sbjct: 32  TLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRL 91

Query: 80  PHLLLLRLRNSIVKLPGGRLRPNESDLDGLRRKLSSKLSAIGASDA--SDWEIGECLGMW 139
           PH+LLL+L  +  KLPGG L P E +++GL+R ++     +G  D    DW I +C+G W
Sbjct: 92  PHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMT---EILGRQDGVLQDWVIDDCIGNW 151

Query: 140 WRPDFETFD-PHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETY 199
           WRP+FE    P++ +++   KE  KLFLV+L E   F VPKN KL+A PL ++  +   Y
Sbjct: 152 WRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGY 211

Query: 200 GPVISSIPQLLSKFSF 205
           GP+ISS+PQLLS+F+F
Sbjct: 212 GPIISSLPQLLSRFNF 224

[Close]

BLAST of Carg10797 vs. ExPASy TrEMBL
Match: A0A6J1G4C8 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC111450684 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.4e-91
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSI KLPGGRLRPNESDLDG
Sbjct: 48  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDG 107

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP 160
           LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP
Sbjct: 108 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP 167

Query: 161 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 210
           ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT
Sbjct: 168 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 216

[Close]

BLAST of Carg10797 vs. ExPASy TrEMBL
Match: A0A6J1KFM8 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111493862 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.3e-90
Identity = 167/169 (98.82%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIV+LPGGRLRPNESDLDG
Sbjct: 48  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVQLPGGRLRPNESDLDG 107

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLP 160
           LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLV LP
Sbjct: 108 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVMLP 167

Query: 161 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 210
           ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT
Sbjct: 168 ENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 216

[Close]

BLAST of Carg10797 vs. ExPASy TrEMBL
Match: A0A6J1FHN4 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC111444047 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.9e-73
Identity = 139/170 (81.76%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           ADRV RM SNYAAYGLRT V AVLLVELFKHPH+LLL++RNSI  LPGGRLRPNESD+DG
Sbjct: 48  ADRVIRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDG 107

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKL 160
           L+RKLS KLSA GA DASDWE+G+CLG WWRPDFET   PHLS+NVKGAKECTKLFLVKL
Sbjct: 108 LKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPHLSNNVKGAKECTKLFLVKL 167

Query: 161 PENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 210
           PENR+F VPKNLKLIAVPLCQ+ ++H+ YGPVIS IPQLLSKFSFNII T
Sbjct: 168 PENRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET 217

[Close]

BLAST of Carg10797 vs. ExPASy TrEMBL
Match: A0A1S3C9Z9 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103498651 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 5.5e-73
Identity = 137/170 (80.59%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           +DR+ RM SNYAAYGLRT V AV+LVELFKHPHLLL ++RNSI KLPGGRLRPNESD+DG
Sbjct: 50  SDRILRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDG 109

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKL 160
           L RKLS KL A GASDASDWE+ ECLGMWWRPDFET   P+LS+NVKGAKEC KLFLVKL
Sbjct: 110 LTRKLSKKLCANGASDASDWEVNECLGMWWRPDFETLLFPYLSTNVKGAKECAKLFLVKL 169

Query: 161 PENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 210
           PE+++F VPKNLKLIAVPLCQI ++H+TYGPVIS IPQLLSKFSFNIIGT
Sbjct: 170 PESKKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIGT 219

[Close]

BLAST of Carg10797 vs. ExPASy TrEMBL
Match: A0A6J1DN47 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Momordica charantia OX=3673 GN=LOC111021937 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 7.2e-73
Identity = 138/168 (82.14%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           ADR+ RM SNYAA GLRT V AVLLVELFKHPHLLLL++RNSI KLPGGRLRPNESD+DG
Sbjct: 48  ADRLHRMKSNYAANGLRTCVEAVLLVELFKHPHLLLLQIRNSIFKLPGGRLRPNESDIDG 107

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKL 160
           L+RKLS KLSA G SDASDWE+GECLGMWWRPDFET   P+LSSNVKGAKECTKLFLVKL
Sbjct: 108 LKRKLSRKLSANGTSDASDWEVGECLGMWWRPDFETLLYPYLSSNVKGAKECTKLFLVKL 167

Query: 161 PENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNII 208
           PE+R+F VPKNLKLIAVPLCQ+ ++ +TYGPVIS +PQLLSKFSFNII
Sbjct: 168 PESRKFIVPKNLKLIAVPLCQLHENQKTYGPVISGVPQLLSKFSFNII 215

[Close]

BLAST of Carg10797 vs. TAIR 10
Match: AT4G29820.1 (homolog of CFIM-25 )

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-61
Identity = 111/168 (66.07%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           +DRV R+ SNYAA+GLRT V AVLLVELFKHPH+LLL+ RNSI KLPGGRLRP ESD++G
Sbjct: 53  SDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEG 112

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKL 160
           L+RKL+SKLS       S +E+GEC+GMWWRP+FET   P L  N+K  KECTKLFLV+L
Sbjct: 113 LKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFETLMYPFLPPNIKHPKECTKLFLVRL 172

Query: 161 PENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNII 208
           P +++F VPKN KL+AVPLCQ+ ++ +TYGP++S IP+LLSKFSFN++
Sbjct: 173 PVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQIPKLLSKFSFNMM 220

[Close]

BLAST of Carg10797 vs. TAIR 10
Match: AT4G25550.1 (Cleavage/polyadenylation specificity factor, 25kDa subunit )

HSP 1 Score: 184.5 bits (467), Expect = 8.8e-47
Identity = 87/170 (51.18%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 41  ADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIVKLPGGRLRPNESDLDG 100
           ADR+ RM  NY   G+RT V  +LLV+   HPH+LLL++ N+  KLPGGRL+P E++ DG
Sbjct: 31  ADRLARMKINYMKEGMRTSVEGILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEADG 90

Query: 101 LRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKL 160
           L+RKL+SKL    A+   DW +GEC+  WWRP+FET   P+   ++   KEC +L++V L
Sbjct: 91  LKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFETMMYPYCPPHITKPKECKRLYIVHL 150

Query: 161 PENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT 210
            E   F VPKNLKL+AVPL ++  + + YGPVIS+IPQ LS+F FN+I +
Sbjct: 151 SEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFHFNMISS 200

The following BLAST results are available for this feature:

BLAST of Carg10797 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030495.1	6.4e-116	100.00	Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucurbita argyrosperma subsp. argy...	[more]
KAG6599518.1	1.9e-91	100.00	Pre-mRNA cleavage factor Im 25 kDa subunit 1, partial [Cucurbita argyrosperma su...	[more]
XP_022946691.1	7.1e-91	99.41	pre-mRNA cleavage factor Im 25 kDa subunit 1-like [Cucurbita moschata]	[more]
XP_022999530.1	2.7e-90	98.82	pre-mRNA cleavage factor Im 25 kDa subunit 1-like [Cucurbita maxima]	[more]
XP_023545701.1	3.1e-86	95.27	pre-mRNA cleavage factor Im 25 kDa subunit 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg10797 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AF0	2.3e-60	66.07	Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8GXS3	1.2e-45	51.18	Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q55E68	9.8e-35	46.67	Cleavage and polyadenylation specificity factor subunit 5 OS=Dictyostelium disco...	[more]
Q7T3C6	8.3e-34	40.82	Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955...	[more]
Q3ZCA2	1.1e-33	40.82	Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 ...	[more]

BLAST of Carg10797 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4C8	3.4e-91	99.41	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KFM8	1.3e-90	98.82	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FHN4	1.9e-73	81.76	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1S3C9Z9	5.5e-73	80.59	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis melo OX=3656 GN=LOC1034986...	[more]
A0A6J1DN47	7.2e-73	82.14	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Carg10797 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29820.1	1.6e-61	66.07	homolog of CFIM-25	[more]
AT4G25550.1	8.8e-47	51.18	Cleavage/polyadenylation specificity factor, 25kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PFAM	PF13869	NUDIX_2	coord: 40..202 e-value: 1.9E-54 score: 184.1
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PIRSF	PIRSF017888	CPSF-25	coord: 13..209 e-value: 8.4E-62 score: 206.2
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PANTHER	PTHR13047	PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT	coord: 35..207
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 18..206 e-value: 1.1E-58 score: 199.8
None	No IPR available	PANTHER	PTHR13047:SF1	PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 1	coord: 35..207
IPR000086	NUDIX hydrolase domain	PROSITE	PS51462	NUDIX	coord: 55..180 score: 8.68657
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	55811	Nudix	coord: 37..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10797-RA	Carg10797-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005849	mRNA cleavage factor complex
molecular_function	GO:0003729	mRNA binding