Carg10368 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10368
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LIM domain-containing protein WLIM1-like
Location	Carg_Chr10: 644745 .. 646689 (-)
RNA-Seq Expression	Carg10368
Synteny	Carg10368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATCTTCTGCCTCTTCTTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCTTCTCAGCTTGGCAGTTCAGTTTAGTTTTGTTCTGTTTCTGTTCATATTCTTCCTTGAATCCTAAAGATTTTTTGAAGATGGCGTTTTTAGGGACAACCCAAAAGTGCAAGGCCTGTGACAAAACTGTTTACTTGGTTGATCAGCTCACTGCTGATAACAAAATCTACCACAAGGCCTGTTTCAGGTGCTACCATTGCAAGAGCACTCTAAAGGTAACTCTTTTCAATCTTACACACGTATATTTCTTTCTTATATGGATCTTCCTTCAGCTGAGAGCCTTGTTGTGAATGGAATAGATGCATGCTGCTCAAGATATGCCTATTTCCAGATCCTATCCATCATATTCAGTATCTCAAACTGATATAAAATGATCGTATTTCCAATTCTATCTGCACTTTTGGCTAAAATTTTCATGTTGTAATAGTTGAATGATTCCATATCTCATAAGTATCTGATTCCACTCGAGTTTGTCTTTATCTCCAGGTTGAAACTTATTCGACAATGAATTTTGCTATCTTAGATGTTGTGTTTGTTAAGATTCTGCTTGTTACTGTACAAGGATCATAGTTTGTCTTTAAGATCATAACTTTCAACCTTTGGATCGTAGAGATATTCCTTAACCAGTAGAGCTATGTTTAGGTTAGCTTGGTTCCCATAGTTCGAACATTATCACCGGTACTGATTCTATTTTTTTATGTCACTGCAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTATATTGTAAACCCCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTGGAAAAAAGTTTTGAAGGTAATTGGTTGTTGTTGAGTCTTTTTCCGCCTTCAATGACTTCTGCTTGTTTAGTCTATTATCTTCTTCTTTCTTCTCTTTAGGTACTCCAAGAACCATTAGAACAGACAGATCTACCAATCAGGTTTTTCTTTTCTTTATTCATTTTTTGGAAGCTTATCTGCTAAAATCAATACTTATGCTCTGATTCCTGACTACTAGTTGTTGTTATTAACATTTGAAAGGTCCAATCCAACAGCAAAGTGTCGAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTAAATGGCCATTATACAGTTTAAAAGCCTCTAGTTTTTTACTTTCTTCCTGTGGCTATTCTATGAATCATTCACTCAAGTTGTCATCACATTTACAACCTAAACATTCAAATGCTAAAAGGGTACAAAACCTTCCTAATCACCTGTTTTTCTCGAGAGAGAATCAACTATATCATGCAAAAGGAAGAGCTACAGTTCAAGAAATTTCCTTATAATACAACTCGAAATGGTATCACATTAGGAAGTTACAAACTAGGATAGTTGAATGTTGTCCTAAACTAGCTTTCTTTTCATCCCTTCGTGTTGCGTCGATTCAGACTCGAACCTAACCACCCCACTTTTGGAGATGACGGTCTCCTTGATCTAAGGCAATGGAATCTTTGAAGAACTTCTGAACCTTTTAATGGAGGATATAATGTGCTAACCAATCGAGTGATACTCAAATTGCGATAAAACTAGTTGGCTATATTAAGAAAGGCTGTTTTTTTTTTTTTTTTTGCTTCCATCAGGTGGCAGTAGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCAAACTACATAGCACACGAACATCGACTGTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAGGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGGAGTGACTGAGAACACACCAGTTGAGAAGAACTTGATGTTGGATGCAACTGTTATATTGTGCATGAGGAACAGATAAAGTTACGTTTT

mRNA sequence

AGATCTTCTGCCTCTTCTTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCTTCTCAGCTTGGCAGTTCAGTTTAGTTTTGTTCTGTTTCTGTTCATATTCTTCCTTGAATCCTAAAGATTTTTTGAAGATGGCGTTTTTAGGGACAACCCAAAAGTGCAAGGCCTGTGACAAAACTGTTTACTTGGTTGATCAGCTCACTGCTGATAACAAAATCTACCACAAGGCCTGTTTCAGGTGCTACCATTGCAAGAGCACTCTAAAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTATATTGTAAACCCCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTGGAAAAAAGTTTTGAAGGTACTCCAAGAACCATTAGAACAGACAGATCTACCAATCAGGTCCAATCCAACAGCAAAGTGTCGAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTGGCAGTAGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCAAACTACATAGCACACGAACATCGACTGTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAGGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGGAGTGACTGAGAACACACCAGTTGAGAAGAACTTGATGTTGGATGCAACTGTTATATTGTGCATGAGGAACAGATAAAGTTACGTTTT

Coding sequence (CDS)

AGATCTTCTGCCTCTTCTTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCTTCTCAGCTTGGCAGTTCAGTTTAGTTTTGTTCTGTTTCTGTTCATATTCTTCCTTGAATCCTAAAGATTTTTTGAAGATGGCGTTTTTAGGGACAACCCAAAAGTGCAAGGCCTGTGACAAAACTGTTTACTTGGTTGATCAGCTCACTGCTGATAACAAAATCTACCACAAGGCCTGTTTCAGGTGCTACCATTGCAAGAGCACTCTAAAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTATATTGTAAACCCCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTGGAAAAAAGTTTTGAAGGTACTCCAAGAACCATTAGAACAGACAGATCTACCAATCAGGTCCAATCCAACAGCAAAGTGTCGAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTGGCAGTAGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCAAACTACATAGCACACGAACATCGACTGTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAGGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGGAGTGACTGA

Protein sequence

RSSASSSSLPFPSLPFFSAWQFSLVLFCFCSYSSLNPKDFLKMAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD

Homology

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BLAST of Carg10368 vs. NCBI nr
Match: KAG7023149.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 469.9 bits (1208), Expect = 1.2e-128
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   RSSASSSSLPFPSLPFFSAWQFSLVLFCFCSYSSLNPKDFLKMAFLGTTQKCKACDKTVY 60
           RSSASSSSLPFPSLPFFSAWQFSLVLFCFCSYSSLNPKDFLKMAFLGTTQKCKACDKTVY
Sbjct: 1   RSSASSSSLPFPSLPFFSAWQFSLVLFCFCSYSSLNPKDFLKMAFLGTTQKCKACDKTVY 60

Query: 61  LVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEG 120
           LVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEG
Sbjct: 61  LVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEG 120

Query: 121 TPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSH 180
           TPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSH
Sbjct: 121 TPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSH 180

Query: 181 GGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD 227
           GGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD
Sbjct: 181 GGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD 226

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BLAST of Carg10368 vs. NCBI nr
Match: XP_022921693.1 (LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_022988414.1 LIM domain-containing protein WLIM1-like [Cucurbita maxima] >XP_023516337.1 LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.7 bits (997), Expect = 3.5e-104
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP
Sbjct: 1   MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 162
           HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE
Sbjct: 61  HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 120

Query: 163 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 222
           KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI
Sbjct: 121 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 180

Query: 223 KGSD 227
           KGSD
Sbjct: 181 KGSD 184

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BLAST of Carg10368 vs. NCBI nr
Match: XP_038878600.1 (LIM domain-containing protein WLIM1-like [Benincasa hispida])

HSP 1 Score: 388.3 bits (996), Expect = 4.6e-104
Identity = 182/186 (97.85%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 41  LKMAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYC 100
           +KMAFLGTTQKCKACDKTVYLVDQLTADNK+YHKACFRC+HCKSTLKLFNYSSFEGVLYC
Sbjct: 1   MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCKSTLKLFNYSSFEGVLYC 60

Query: 101 KPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 160
           KPHFDQLFKMTGSLEKSFEGTPRT+RTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP
Sbjct: 61  KPHFDQLFKMTGSLEKSFEGTPRTLRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 120

Query: 161 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 220
           IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE
Sbjct: 121 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 180

Query: 221 EIKGSD 227
           EIKGSD
Sbjct: 181 EIKGSD 186

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BLAST of Carg10368 vs. NCBI nr
Match: XP_004138126.1 (LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN63605.1 hypothetical protein Csa_013738 [Cucumis sativus])

HSP 1 Score: 384.0 bits (985), Expect = 8.7e-103
Identity = 179/186 (96.24%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 41  LKMAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYC 100
           +KMAFLGTTQKCKACDKTVYLVDQLTADNK+YHKACFRC+HCKSTLKLFNYSSFEGVLYC
Sbjct: 1   MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCKSTLKLFNYSSFEGVLYC 60

Query: 101 KPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 160
           KPHFDQLFKMTGSLEKSFE TPRT+RTDRSTNQVQ+NSK+SSLFAGTQDKCVTCKKTVYP
Sbjct: 61  KPHFDQLFKMTGSLEKSFEATPRTVRTDRSTNQVQTNSKLSSLFAGTQDKCVTCKKTVYP 120

Query: 161 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 220
           IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE
Sbjct: 121 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 180

Query: 221 EIKGSD 227
           EIKGSD
Sbjct: 181 EIKGSD 186

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BLAST of Carg10368 vs. NCBI nr
Match: XP_008453121.1 (PREDICTED: LIM domain-containing protein WLIM1-like [Cucumis melo])

HSP 1 Score: 382.9 bits (982), Expect = 1.9e-102
Identity = 179/186 (96.24%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 41  LKMAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYC 100
           +KMAFLGTTQKCKACDKTVYLVDQLTADNK+YHKACFRC+HCKSTLKLFNYSSFEGVLYC
Sbjct: 1   MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCKSTLKLFNYSSFEGVLYC 60

Query: 101 KPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 160
           KPHFDQLFKMTGSLEKSFEGTPRT+RTDRSTNQVQ+NSK+SSLFAGTQDKCVTCKKTVYP
Sbjct: 61  KPHFDQLFKMTGSLEKSFEGTPRTVRTDRSTNQVQTNSKLSSLFAGTQDKCVTCKKTVYP 120

Query: 161 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 220
           IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE
Sbjct: 121 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 180

Query: 221 EIKGSD 227
           EIK SD
Sbjct: 181 EIKVSD 186

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BLAST of Carg10368 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.2e-72
Identity = 126/185 (68.11%), Postives = 151/185 (81.62%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           MAF GTTQKC ACDKTVYLVD+LTADN++YHKACFRC+HCK TLKL NY+SFEGVLYC+P
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRS-TNQVQSNSKVSSLFAGTQDKCVTCKKTVYPI 162
           HFDQ FK TGSLEKSFEGTP+  + DR    +  + +KVS++F GT++KCV C KTVYPI
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 163 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 222
           EKV+V+   YH++CF+C+HGGC ISPSNYIAHE +LYC+HHH QL K+KGN SQL+   E
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGE 180

Query: 223 IKGSD 227
               D
Sbjct: 181 NAAKD 185

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BLAST of Carg10368 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-68
Identity = 116/179 (64.80%), Postives = 144/179 (80.45%), Query Frame = 0


Query: 44  AFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKPH 103
           +F GTTQKC  C+KTVYLVD+L A+ ++YHKACFRC+HC STLKL N++SF+GV+YC+ H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 104 FDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEK 163
           FDQLFK TGSLEKSF+GTP+       + + QS +++SS F GT+DKC  C K VYPIE+
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKFKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIER 122

Query: 164 VAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 223
           V VD  +YHRACF+C HGGC ISPSNYIAHE RLYC+HHH QLFK+KGN+SQL+  E +
Sbjct: 123 VKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETV 181

[Close]

BLAST of Carg10368 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-59
Identity = 109/184 (59.24%), Postives = 143/184 (77.72%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           M+F GT QKCKAC+KTVY V+ L+AD   YHK+CF+C HCKS L+L +YSS EGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 162
           HF+QLFK +GS  K+F+   ++   D+ST ++ ++ S+V+  F+GTQ+KC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKS--ADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 163 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 222
           EKV V+S++YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 223 IKGS 226
           IK S
Sbjct: 181 IKRS 182

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BLAST of Carg10368 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-59
Identity = 108/182 (59.34%), Postives = 142/182 (78.02%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           M+F GT QKC+AC+KTVY V+ L+AD   YHKACF+C HCKS L+L NYSS EGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 162
           HF+QLFK +GS  K+F+ +P    TD+ T ++ ++ S+++ +F+GTQDKC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFSKNFQ-SPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 163 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 222
           EKV V+S+ YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 223 IK 224
           IK
Sbjct: 181 IK 181

[Close]

BLAST of Carg10368 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.0e-53
Identity = 95/174 (54.60%), Postives = 127/174 (72.99%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           M+F GT  KCKACDKTVY++D LT +   YHK+CFRC HCK TL + NYSS +GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 162
           HF+QLFK +G+  K+F+        D  T   ++ SK+SS F+GTQDKC TCKKTVYP+E
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLT---RTPSKLSSFFSGTQDKCATCKKTVYPLE 120

Query: 163 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQL 217
           KV ++ +SYH+ CFRC+H GC ++ S+Y +    LYC+ H NQLF +KG+++ +
Sbjct: 121 KVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171

[Close]

BLAST of Carg10368 vs. ExPASy TrEMBL
Match: A0A6J1JLG7 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111485663 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.7e-104
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP
Sbjct: 1   MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 162
           HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE
Sbjct: 61  HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 120

Query: 163 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 222
           KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI
Sbjct: 121 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 180

Query: 223 KGSD 227
           KGSD
Sbjct: 181 KGSD 184

[Close]

BLAST of Carg10368 vs. ExPASy TrEMBL
Match: A0A6J1E4K3 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111429864 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.7e-104
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP
Sbjct: 1   MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 162
           HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE
Sbjct: 61  HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIE 120

Query: 163 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 222
           KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI
Sbjct: 121 KVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEI 180

Query: 223 KGSD 227
           KGSD
Sbjct: 181 KGSD 184

[Close]

BLAST of Carg10368 vs. ExPASy TrEMBL
Match: A0A0A0LNY7 (Pollen-specific protein SF3 OS=Cucumis sativus OX=3659 GN=Csa_1G005660 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.2e-103
Identity = 179/186 (96.24%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 41  LKMAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYC 100
           +KMAFLGTTQKCKACDKTVYLVDQLTADNK+YHKACFRC+HCKSTLKLFNYSSFEGVLYC
Sbjct: 1   MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCKSTLKLFNYSSFEGVLYC 60

Query: 101 KPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 160
           KPHFDQLFKMTGSLEKSFE TPRT+RTDRSTNQVQ+NSK+SSLFAGTQDKCVTCKKTVYP
Sbjct: 61  KPHFDQLFKMTGSLEKSFEATPRTVRTDRSTNQVQTNSKLSSLFAGTQDKCVTCKKTVYP 120

Query: 161 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 220
           IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE
Sbjct: 121 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 180

Query: 221 EIKGSD 227
           EIKGSD
Sbjct: 181 EIKGSD 186

[Close]

BLAST of Carg10368 vs. ExPASy TrEMBL
Match: A0A1S3BVF2 (LIM domain-containing protein WLIM1-like OS=Cucumis melo OX=3656 GN=LOC103493931 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.4e-103
Identity = 179/186 (96.24%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 41  LKMAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYC 100
           +KMAFLGTTQKCKACDKTVYLVDQLTADNK+YHKACFRC+HCKSTLKLFNYSSFEGVLYC
Sbjct: 1   MKMAFLGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCKSTLKLFNYSSFEGVLYC 60

Query: 101 KPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 160
           KPHFDQLFKMTGSLEKSFEGTPRT+RTDRSTNQVQ+NSK+SSLFAGTQDKCVTCKKTVYP
Sbjct: 61  KPHFDQLFKMTGSLEKSFEGTPRTVRTDRSTNQVQTNSKLSSLFAGTQDKCVTCKKTVYP 120

Query: 161 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 220
           IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE
Sbjct: 121 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 180

Query: 221 EIKGSD 227
           EIK SD
Sbjct: 181 EIKVSD 186

[Close]

BLAST of Carg10368 vs. ExPASy TrEMBL
Match: A0A6J1BZ78 (LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC111006836 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.5e-100
Identity = 175/182 (96.15%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 41  LKMAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYC 100
           +KMAF GTTQKCKACDKTVYLVDQLTADNK+YHKACFRC+HCKSTLKLFNYSSFEGVLYC
Sbjct: 1   MKMAFSGTTQKCKACDKTVYLVDQLTADNKVYHKACFRCHHCKSTLKLFNYSSFEGVLYC 60

Query: 101 KPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYP 160
           KPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQ+NSKVSSLFAGTQDKCVTCKKTVYP
Sbjct: 61  KPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQTNSKVSSLFAGTQDKCVTCKKTVYP 120

Query: 161 IEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHE 220
           IEKVAVDSKSYHR+CFRCSHGGCVISPSNYIAHE RLYCRHHHNQLFKQKGNFSQLDKHE
Sbjct: 121 IEKVAVDSKSYHRSCFRCSHGGCVISPSNYIAHESRLYCRHHHNQLFKQKGNFSQLDKHE 180

Query: 221 EI 223
           EI
Sbjct: 181 EI 182

[Close]

BLAST of Carg10368 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 273.5 bits (698), Expect = 1.5e-73
Identity = 126/185 (68.11%), Postives = 151/185 (81.62%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           MAF GTTQKC ACDKTVYLVD+LTADN++YHKACFRC+HCK TLKL NY+SFEGVLYC+P
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRS-TNQVQSNSKVSSLFAGTQDKCVTCKKTVYPI 162
           HFDQ FK TGSLEKSFEGTP+  + DR    +  + +KVS++F GT++KCV C KTVYPI
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 163 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 222
           EKV+V+   YH++CF+C+HGGC ISPSNYIAHE +LYC+HHH QL K+KGN SQL+   E
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGGGE 180

Query: 223 IKGSD 227
               D
Sbjct: 181 NAAKD 185

[Close]

BLAST of Carg10368 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 231.1 bits (588), Expect = 8.8e-61
Identity = 109/184 (59.24%), Postives = 143/184 (77.72%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           M+F GT QKCKAC+KTVY V+ L+AD   YHK+CF+C HCKS L+L +YSS EGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 162
           HF+QLFK +GS  K+F+   ++   D+ST ++ ++ S+V+  F+GTQ+KC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKS--ADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 163 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 222
           EKV V+S++YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 223 IKGS 226
           IK S
Sbjct: 181 IKRS 182

[Close]

BLAST of Carg10368 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 231.1 bits (588), Expect = 8.8e-61
Identity = 109/184 (59.24%), Postives = 143/184 (77.72%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           M+F GT QKCKAC+KTVY V+ L+AD   YHK+CF+C HCKS L+L +YSS EGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 162
           HF+QLFK +GS  K+F+   ++   D+ST ++ ++ S+V+  F+GTQ+KC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKS--ADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 163 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 222
           EKV V+S++YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 223 IKGS 226
           IK S
Sbjct: 181 IKRS 182

[Close]

BLAST of Carg10368 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 231.1 bits (588), Expect = 8.8e-61
Identity = 109/184 (59.24%), Postives = 143/184 (77.72%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           M+F GT QKCKAC+KTVY V+ L+AD   YHK+CF+C HCKS L+L +YSS EGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 162
           HF+QLFK +GS  K+F+   ++   D+ST ++ ++ S+V+  F+GTQ+KC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKS--ADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 163 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 222
           EKV V+S++YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 223 IKGS 226
           IK S
Sbjct: 181 IKRS 182

[Close]

BLAST of Carg10368 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 231.1 bits (588), Expect = 8.8e-61
Identity = 109/184 (59.24%), Postives = 143/184 (77.72%), Query Frame = 0


Query: 43  MAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKP 102
           M+F GT QKCKAC+KTVY V+ L+AD   YHK+CF+C HCKS L+L +YSS EGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 103 HFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQV-QSNSKVSSLFAGTQDKCVTCKKTVYPI 162
           HF+QLFK +GS  K+F+   ++   D+ST ++ ++ S+V+  F+GTQ+KC TC KTVYPI
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKS--ADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPI 120

Query: 163 EKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEE 222
           EKV V+S++YH++CF+CSHGGC ISPSNY A E  LYC+HH  QLFK+KG+++ L K   
Sbjct: 121 EKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSAS 180

Query: 223 IKGS 226
           IK S
Sbjct: 181 IKRS 182

The following BLAST results are available for this feature:

BLAST of Carg10368 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023149.1	1.2e-128	100.00	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022921693.1	3.5e-104	100.00	LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_022988414.1 LI...	[more]
XP_038878600.1	4.6e-104	97.85	LIM domain-containing protein WLIM1-like [Benincasa hispida]	[more]
XP_004138126.1	8.7e-103	96.24	LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN63605.1 hypothetical p...	[more]
XP_008453121.1	1.9e-102	96.24	PREDICTED: LIM domain-containing protein WLIM1-like [Cucumis melo]	[more]

BLAST of Carg10368 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	2.2e-72	68.11	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	1.5e-68	64.80	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
Q9M047	1.2e-59	59.24	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	1.6e-59	59.34	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	1.0e-53	54.60	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]

BLAST of Carg10368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JLG7	1.7e-104	100.00	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1E4K3	1.7e-104	100.00	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0LNY7	4.2e-103	96.24	Pollen-specific protein SF3 OS=Cucumis sativus OX=3659 GN=Csa_1G005660 PE=4 SV=1	[more]
A0A1S3BVF2	9.4e-103	96.24	LIM domain-containing protein WLIM1-like OS=Cucumis melo OX=3656 GN=LOC103493931...	[more]
A0A6J1BZ78	7.5e-100	96.15	LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Carg10368 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	1.5e-73	68.11	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	8.8e-61	59.24	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	8.8e-61	59.24	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	8.8e-61	59.24	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	8.8e-61	59.24	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 150..202 e-value: 1.0E-11 score: 55.0 coord: 51..103 e-value: 1.8E-12 score: 57.4
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 52..106 e-value: 3.8E-10 score: 39.8 coord: 151..206 e-value: 4.7E-10 score: 39.6
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 52..86
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 149..209 score: 12.0484
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 50..110 score: 13.1473
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 47..116 e-value: 3.0E-19 score: 71.0 coord: 145..215 e-value: 2.6E-18 score: 68.0
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 44..223
None	No IPR available	PANTHER	PTHR24206:SF63	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 44..223
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 48..109 e-value: 6.14862E-37 score: 122.188
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 151..211 e-value: 1.66298E-36 score: 121.038
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 177..215
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 44..77
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 78..118
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 143..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10368-RA	Carg10368-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding