Carg10360 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10360
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	BEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
Location	Carg_Chr10: 606794 .. 607309 (+)
RNA-Seq Expression	Carg10360
Synteny	Carg10360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTATCCAGATGCAGAAGAGCCTCCTCCTTGCGAAGCGGCTAATTCCAATTCTTTGTTGCCGACCACCAGGTGCGGATGTTTCCGGTTATCGTGCTTGGAATCTCGCCGTGCGGTAGCCGTCGGGCCATCGTGGTGGGAGAGGATTAGGGCGTCGCAGGTTCACAGCGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTATATTGAAGATCCGAGAGTGGTCTGAGATAGTCGCTGGACCGAGATGGAAGACTTTCATTCGTCGATTTAACAGGAATCGGAACGGTGGTGGTGGTGGTGGTGGTGGTGCTACTGGTAGGCCTGGGAAATTTCATTACGATCCCTTGAGTTACGCTATGAATTTTGATGAAGGTTCGAGGCAGATTGGGGAATTGGACGACGATAATGACGACTTCAATGGGTATCGGAACTTCTCTGCTCGTTACGCTTCAATACCGGCGCCGTTGAAGACCGGAGGAACAACTGGGAAGGATATATCTACCGTCGCGTAA

mRNA sequence

ATGGCGTATCCAGATGCAGAAGAGCCTCCTCCTTGCGAAGCGGCTAATTCCAATTCTTTGTTGCCGACCACCAGGTGCGGATGTTTCCGGTTATCGTGCTTGGAATCTCGCCGTGCGGTAGCCGTCGGGCCATCGTGGTGGGAGAGGATTAGGGCGTCGCAGGTTCACAGCGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTATATTGAAGATCCGAGAGTGGTCTGAGATAGTCGCTGGACCGAGATGGAAGACTTTCATTCGTCGATTTAACAGGAATCGGAACGGTGGTGGTGGTGGTGGTGGTGGTGCTACTGGTAGGCCTGGGAAATTTCATTACGATCCCTTGAGTTACGCTATGAATTTTGATGAAGGTTCGAGGCAGATTGGGGAATTGGACGACGATAATGACGACTTCAATGGGTATCGGAACTTCTCTGCTCGTTACGCTTCAATACCGGCGCCGTTGAAGACCGGAGGAACAACTGGGAAGGATATATCTACCGTCGCGTAA

Coding sequence (CDS)

ATGGCGTATCCAGATGCAGAAGAGCCTCCTCCTTGCGAAGCGGCTAATTCCAATTCTTTGTTGCCGACCACCAGGTGCGGATGTTTCCGGTTATCGTGCTTGGAATCTCGCCGTGCGGTAGCCGTCGGGCCATCGTGGTGGGAGAGGATTAGGGCGTCGCAGGTTCACAGCGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTATATTGAAGATCCGAGAGTGGTCTGAGATAGTCGCTGGACCGAGATGGAAGACTTTCATTCGTCGATTTAACAGGAATCGGAACGGTGGTGGTGGTGGTGGTGGTGGTGCTACTGGTAGGCCTGGGAAATTTCATTACGATCCCTTGAGTTACGCTATGAATTTTGATGAAGGTTCGAGGCAGATTGGGGAATTGGACGACGATAATGACGACTTCAATGGGTATCGGAACTTCTCTGCTCGTTACGCTTCAATACCGGCGCCGTTGAAGACCGGAGGAACAACTGGGAAGGATATATCTACCGTCGCGTAA

Protein sequence

MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA

Homology

[Close]

BLAST of Carg10360 vs. NCBI nr
Match: KAG7023141.1 (hypothetical protein SDJN02_14166, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 360.9 bits (925), Expect = 6.0e-96
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR 60
           MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR
Sbjct: 1   MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR 60

Query: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYA 120
           WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYA
Sbjct: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYA 120

Query: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 172
           MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Sbjct: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 171

[Close]

BLAST of Carg10360 vs. NCBI nr
Match: KAG6589457.1 (hypothetical protein SDJN03_14880, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 348.2 bits (892), Expect = 4.0e-92
Identity = 167/171 (97.66%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR 60
           MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR
Sbjct: 1   MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR 60

Query: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYA 120
           WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRN    GGGGATGRPGKFHYDPLSYA
Sbjct: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRN----GGGGATGRPGKFHYDPLSYA 120

Query: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 172
           MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Sbjct: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 167

[Close]

BLAST of Carg10360 vs. NCBI nr
Match: XP_022988416.1 (uncharacterized protein LOC111485666 [Cucurbita maxima])

HSP 1 Score: 345.5 bits (885), Expect = 2.6e-91
Identity = 165/171 (96.49%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR 60
           MAYPDAEEPPP EA NSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIR SQVHSEGR
Sbjct: 1   MAYPDAEEPPPYEADNSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRGSQVHSEGR 60

Query: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYA 120
           WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGG A GRPGKF YDPLSYA
Sbjct: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGAAAGRPGKFQYDPLSYA 120

Query: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 172
           MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Sbjct: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 171

[Close]

BLAST of Carg10360 vs. NCBI nr
Match: XP_023516338.1 (uncharacterized protein LOC111780229 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341.3 bits (874), Expect = 4.9e-90
Identity = 162/171 (94.74%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR 60
           MAYPDAEEPPPCEA +SNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR
Sbjct: 1   MAYPDAEEPPPCEADSSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR 60

Query: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYA 120
           WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNG GGGG  A GRPGKF YDPLSYA
Sbjct: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGSGGGGAAAAGRPGKFQYDPLSYA 120

Query: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 172
           MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIP PLKTGG TGKDISTVA
Sbjct: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPTPLKTGGATGKDISTVA 171

[Close]

BLAST of Carg10360 vs. NCBI nr
Match: XP_022921694.1 (uncharacterized protein LOC111429865 [Cucurbita moschata])

HSP 1 Score: 332.4 bits (851), Expect = 2.3e-87
Identity = 160/171 (93.57%), Postives = 160/171 (93.57%), Query Frame = 0


Query: 1   MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR 60
           MAYPDAEEPPPCE  NSNSLLPTTRCGCFRLSCLE RRAVAVGPSWWERIRASQVHSEGR
Sbjct: 1   MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGR 60

Query: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYA 120
           WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGG G      GRPGKF YDPLSYA
Sbjct: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG-----AGRPGKFQYDPLSYA 120

Query: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 172
           MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Sbjct: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 166

[Close]

BLAST of Carg10360 vs. ExPASy TrEMBL
Match: A0A6J1JH52 (uncharacterized protein LOC111485666 OS=Cucurbita maxima OX=3661 GN=LOC111485666 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.3e-91
Identity = 165/171 (96.49%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR 60
           MAYPDAEEPPP EA NSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIR SQVHSEGR
Sbjct: 1   MAYPDAEEPPPYEADNSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRGSQVHSEGR 60

Query: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYA 120
           WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGG A GRPGKF YDPLSYA
Sbjct: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGAAAGRPGKFQYDPLSYA 120

Query: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 172
           MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Sbjct: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 171

[Close]

BLAST of Carg10360 vs. ExPASy TrEMBL
Match: A0A6J1E188 (uncharacterized protein LOC111429865 OS=Cucurbita moschata OX=3662 GN=LOC111429865 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 160/171 (93.57%), Postives = 160/171 (93.57%), Query Frame = 0


Query: 1   MAYPDAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGR 60
           MAYPDAEEPPPCE  NSNSLLPTTRCGCFRLSCLE RRAVAVGPSWWERIRASQVHSEGR
Sbjct: 1   MAYPDAEEPPPCEVDNSNSLLPTTRCGCFRLSCLEFRRAVAVGPSWWERIRASQVHSEGR 60

Query: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYA 120
           WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGG G      GRPGKF YDPLSYA
Sbjct: 61  WWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGAG-----AGRPGKFQYDPLSYA 120

Query: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 172
           MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA
Sbjct: 121 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 166

[Close]

BLAST of Carg10360 vs. ExPASy TrEMBL
Match: A0A5D3BK38 (Putative Serine/arginine repetitive matrix protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001870 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.7e-75
Identity = 143/169 (84.62%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 5   DAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGRWWAR 64
           D EE P CEA  SNSLLPT RCGCFRLSC  SRR   VGPSWWERIRASQVHSEGRWWAR
Sbjct: 7   DQEESPCCEADKSNSLLPTARCGCFRLSCFGSRRVATVGPSWWERIRASQVHSEGRWWAR 66

Query: 65  GVRVILKIREWSEIVAGPRWKTFIRRFNRNRNG--GGGGGGGATGRPGKFHYDPLSYAMN 124
           GV+VILK+REWSEIVAGPRWKTFIRRFNRNR+G  GGGGGGG+  R GKF YDPLSYAMN
Sbjct: 67  GVKVILKLREWSEIVAGPRWKTFIRRFNRNRSGGCGGGGGGGSGVRAGKFQYDPLSYAMN 126

Query: 125 FDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 172
           FDEGSRQIGELDDD DDFNGYRNFSARYASIPAPLKTGGT  KD+S VA
Sbjct: 127 FDEGSRQIGELDDDMDDFNGYRNFSARYASIPAPLKTGGT--KDVSAVA 173

[Close]

BLAST of Carg10360 vs. ExPASy TrEMBL
Match: A0A1S3BVG0 (uncharacterized protein LOC103493921 OS=Cucumis melo OX=3656 GN=LOC103493921 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.7e-75
Identity = 143/169 (84.62%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 5   DAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGRWWAR 64
           D EE P CEA  SNSLLPT RCGCFRLSC  SRR   VGPSWWERIRASQVHSEGRWWAR
Sbjct: 7   DQEESPCCEADKSNSLLPTARCGCFRLSCFGSRRVATVGPSWWERIRASQVHSEGRWWAR 66

Query: 65  GVRVILKIREWSEIVAGPRWKTFIRRFNRNRNG--GGGGGGGATGRPGKFHYDPLSYAMN 124
           GV+VILK+REWSEIVAGPRWKTFIRRFNRNR+G  GGGGGGG+  R GKF YDPLSYAMN
Sbjct: 67  GVKVILKLREWSEIVAGPRWKTFIRRFNRNRSGGCGGGGGGGSGVRAGKFQYDPLSYAMN 126

Query: 125 FDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 172
           FDEGSRQIGELDDD DDFNGYRNFSARYASIPAPLKTGGT  KD+S VA
Sbjct: 127 FDEGSRQIGELDDDMDDFNGYRNFSARYASIPAPLKTGGT--KDVSAVA 173

[Close]

BLAST of Carg10360 vs. ExPASy TrEMBL
Match: A0A5A7UWM1 (Putative Serine/arginine repetitive matrix protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001790 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.3e-75
Identity = 143/171 (83.63%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 5   DAEEPPPCEAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGRWWAR 64
           D EE P CEA  SNSLLPT RCGCFRLSC  SRR   VGPSWWERIRASQVHSEGRWWAR
Sbjct: 7   DQEESPCCEADKSNSLLPTARCGCFRLSCFGSRRVATVGPSWWERIRASQVHSEGRWWAR 66

Query: 65  GVRVILKIREWSEIVAGPRWKTFIRRFNRNRN----GGGGGGGGATGRPGKFHYDPLSYA 124
           GV+VILK+REWSEIVAGPRWKTFIRRFNRNR+    GGGGGGGG+  R GKF YDPLSYA
Sbjct: 67  GVKVILKLREWSEIVAGPRWKTFIRRFNRNRSGGCGGGGGGGGGSGVRAGKFQYDPLSYA 126

Query: 125 MNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKTGGTTGKDISTVA 172
           MNFDEGSRQIGELDDD DDFNGYRNFSARYASIPAPLKTGGT  KD+S VA
Sbjct: 127 MNFDEGSRQIGELDDDMDDFNGYRNFSARYASIPAPLKTGGT--KDVSAVA 175

[Close]

BLAST of Carg10360 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24
Identity = 73/172 (42.44%), Postives = 98/172 (56.98%), Query Frame = 0


Query: 7   EEPPPCEAANSNSL---LPTTRCGCFRLSCLESRRAVAVGPS-WWERI-RASQVHSEGRW 66
           + PP  E   ++ +   L   R  CF + CL S +    G S WW+RI    ++  + RW
Sbjct: 4   QSPPIAEVDATDDMHEALFAKRGCCFLMPCLASSQPSTRGGSVWWQRITTVDKLEPDERW 63

Query: 67  WARGVRVILKIREWSEIVAGPRWKTFIRRFNR-NRNGGGGG---------GGGA----TG 126
           W RG R   ++REWSE+VAGPRWKT+IRRF R N  GGGGG         GGGA    + 
Sbjct: 64  WIRGWR---RMREWSELVAGPRWKTYIRRFGRSNCCGGGGGRVGNSSGGCGGGAMPNRSS 123

Query: 127 RPGKFHYDPLSYAMNFDEGSRQIGELDDDNDDFNGYRNFSARYASIPAPLKT 160
             GKF YD LSY++NFD+G+ Q G  DD+      YR++S R+A+   P+ T
Sbjct: 124 DQGKFRYDQLSYSLNFDDGN-QTGHFDDEFP----YRDYSMRFAAPSLPVST 167

[Close]

BLAST of Carg10360 vs. TAIR 10
Match: AT5G62865.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). )

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 69/140 (49.29%), Postives = 81/140 (57.86%), Query Frame = 0


Query: 25  RCGCFRLSCLESRRAVAVGPSWWERIRA--SQVHS-----EGRWWARGVRVILKIREWSE 84
           RC CF  S   SR + AVG S W RIR      HS     E RWW   +R  LKIREWSE
Sbjct: 19  RCCCFP-SFRRSRSSTAVGYSSWGRIRTVDDSNHSGDHGDEPRWW---IRASLKIREWSE 78

Query: 85  IVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYAMNFDEGSRQIGELDDDN 144
           IVAGPRWKTFIRRFNR+   G            KF YDPLSY++NFD+        DD+ 
Sbjct: 79  IVAGPRWKTFIRRFNRDPRRGRDWDASE-----KFQYDPLSYSLNFDD--------DDEE 138

Query: 145 DDF---NGYRNFSARYASIP 155
           D++    G R+FS R+AS+P
Sbjct: 139 DEYVGLGGLRSFSTRFASVP 141

[Close]

BLAST of Carg10360 vs. TAIR 10
Match: AT3G48020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23
Identity = 64/142 (45.07%), Postives = 78/142 (54.93%), Query Frame = 0


Query: 13  EAANSNSLLPTTRCGCFRLSCLESRRAVAVGPSWWERIRASQVHSEGRWWARGVRVILKI 72
           E   +N LL  + C      C     +  V  SWW+RI  +  H E RWW   VR  LKI
Sbjct: 2   EVGQANPLLGESSC------C-----STTVKSSWWQRIHRNN-HQEPRWW---VRAFLKI 61

Query: 73  REWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFHYDPLSYAMNFDEGSRQIGE 132
           REWSEIVAGPRWKTFIRRFNR+   G            KF YDP+SY ++F++  +    
Sbjct: 62  REWSEIVAGPRWKTFIRRFNRDPRRGQDWDDS-----DKFRYDPVSYTLSFEDEDKD--- 119

Query: 133 LDDDNDDFNGYRNFSARYASIP 155
            DDD     G R+FS RYAS+P
Sbjct: 122 -DDDEAGVGGVRSFSMRYASVP 119

[Close]

BLAST of Carg10360 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-22
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 0


Query: 28  CFRLSCL-ESRRAVAVGPSWWERIR-ASQVHSEGRWWARGVRVILKIREWSEIVAGPRWK 87
           CF L CL  S+ +   G  WW+RIR   ++  + RWW  G    +K+REWSEIVAGP+WK
Sbjct: 611 CFILPCLGSSQPSGPNGSVWWQRIRTVDKLEPDERWWVSG---WMKMREWSEIVAGPKWK 670

Query: 88  TFIRRFNRNRNGGGGGGGGATGRPG--KFHYDPLSYAMNFDEGSRQIGELDDDNDDFNGY 147
           TFIRRF RN    GG  GG   RP    F YD  SY++NFD+G +Q G  +D+      Y
Sbjct: 671 TFIRRFGRNHCCNGGIDGGC-NRPEHVSFRYDSWSYSLNFDDG-KQTGHFEDEFP----Y 730

Query: 148 RNFSARYASIPAPLKT 160
           R++S R+A+   P+ T
Sbjct: 731 RDYSMRFAAPSLPVST 737

[Close]

BLAST of Carg10360 vs. TAIR 10
Match: AT5G25240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 3.0e-05
Identity = 26/73 (35.62%), Postives = 36/73 (49.32%), Query Frame = 0


Query: 54  QVHSEGRWWARGVRVILKIREWSEIVAGPRWKTFIRRFNRNRNGGGGGGGGATGRPGKFH 113
           Q    G W   G   +  ++E SE +AGP+WK FIR F+  R            R   F 
Sbjct: 51  QEERRGNW---GSEKLKGLKEISEKIAGPKWKNFIRSFSSGRK--------KMRRDVDFT 110

Query: 114 YDPLSYAMNFDEG 127
           YD  +Y++NFD+G
Sbjct: 111 YDLKNYSLNFDDG 112

The following BLAST results are available for this feature:

BLAST of Carg10360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023141.1	6.0e-96	100.00	hypothetical protein SDJN02_14166, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589457.1	4.0e-92	97.66	hypothetical protein SDJN03_14880, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022988416.1	2.6e-91	96.49	uncharacterized protein LOC111485666 [Cucurbita maxima]	[more]
XP_023516338.1	4.9e-90	94.74	uncharacterized protein LOC111780229 [Cucurbita pepo subsp. pepo]	[more]
XP_022921694.1	2.3e-87	93.57	uncharacterized protein LOC111429865 [Cucurbita moschata]	[more]

BLAST of Carg10360 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JH52	1.3e-91	96.49	uncharacterized protein LOC111485666 OS=Cucurbita maxima OX=3661 GN=LOC111485666...	[more]
A0A6J1E188	1.1e-87	93.57	uncharacterized protein LOC111429865 OS=Cucurbita moschata OX=3662 GN=LOC1114298...	[more]
A0A5D3BK38	3.7e-75	84.62	Putative Serine/arginine repetitive matrix protein 2 OS=Cucumis melo var. makuwa...	[more]
A0A1S3BVG0	3.7e-75	84.62	uncharacterized protein LOC103493921 OS=Cucumis melo OX=3656 GN=LOC103493921 PE=...	[more]
A0A5A7UWM1	6.3e-75	83.63	Putative Serine/arginine repetitive matrix protein 2 OS=Cucumis melo var. makuwa...	[more]

BLAST of Carg10360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01430.1	1.0e-24	42.44	BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:...	[more]
AT5G62865.1	1.1e-23	49.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G48020.1	3.2e-23	45.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G14890.1	1.6e-22	45.59	NHL domain-containing protein	[more]
AT5G25240.1	3.0e-05	35.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47076:SF9	BNAA06G16930D PROTEIN	coord: 13..170
None	No IPR available	PANTHER	PTHR47076	NHL DOMAIN PROTEIN	coord: 13..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10360-RA	Carg10360-RA	mRNA