Carg10348 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10348
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal RNA-processing protein 40
Location	Carg_Chr10: 549655 .. 552015 (-)
RNA-Seq Expression	Carg10348
Synteny	Carg10348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAAAAATCTTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTAAGTTCGAAATCAATCTCATTTTCGTGTTTTCCCTCTTCTTTTTTCCTATTCGATGTTCTGCTGCTTTTGCTTCTGTGGTATCTTTAATGGAATGATGATTGTTTAGGTTCCAGGAGATGTGGTTCTCGACCTCTCAAACATGGCCAATGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGTGTCTGTTAGGGTTTTACTTTTTTTCAATGTTTATGCAATCTTCTATTTATTTCGAATTTCGTTCAGGTTTCGGCAATCAAAGTGCAATTGTGTTGGTTACGGGATCGCTTACCTTCATTTTTTTTTTTGTTTTAATCTGTCAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAGCTGAGGTTCTCGAAGCCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGGTAGGAAATGACACTGTTCAATTGGCATTCGGGATCCTTGTATTGCATGTTCTTTCAGCTAACTTTTGAATTTGTGAACTTCATGCTAGTTTCGGGGGTTTTCTTCAATTCAATTGACTACCAATATTATTATCGAGTTTAATTTTAATAAATTGTTATATTTTCCAGTACGTGCCATGTGTGGAAGATTGTGTTCTTGGAATCGTGGTTGACTCTAGAGCCGATGTAAGTGCTGCTTTATTGTTAAAATATGTATATGTTCACTCGATCCCTAAAAATCTATTGTTCTTCTATCAAAATGACCCAAAAAATTTGTCCATATCCTTAAAGGGAGGAGGATTCCAAAGCACTTCTTCCAAGAAAGCCCCTCTATATCTAATATGAAACCAACAAACATTGAATGATTTCATTAAGAGACTCTAAAGGTAGCGAGCAAACTAACAATGCCATGACAAATGATCAAGGTCCTCATACCTCATGCAAAGAATGTACCATTGCGGAAGAATCCATGTCTAATTATTTCTATGATACTAAGGAATATTTTAATAAACCTTTATTTGTTTGTCAGATTTTGTTCGATTACCTTTTAAGCTATCACCTTATAATTCTTTTTTTTTTTTTTTCCACATTATTTGCAGAATTTTCTTGTTGATATAAAAGGTCCGGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACCAGGCGAAACATACCCAAATTTGAGGTGTTTATAATCTTTTTGTGTACACATTCTTGTTATTTTCACCATATGACCTCTTCCTTTAGAGGTTTGATGCTTTGTCAGTTCATTTATTACCCCCGAGAGGCTTTTCTTGTGTGTTTTTTCTTCTTTCATTTTTTGGGTGCTGGTGGGGGTGCAGGGGTGGCCAGTAAAGGGTGTTCTGATGGGTGTGTTTTTTCTTCTTCTTTCATTTTTTGTAGATGGGTGCCCTGCTTTATGTGAGGGTAGTGAAGGCAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGGTTAGTTAGCTCCTCCATCTCTCTGTGTCCAATAACTTGTTTGAAGGTTGAAACAGTCCATCAAAGAATTATATCAATGTTGCTGTAAACTCATCCTGTGAAGGGGGGTTTGCAGGGCCTGCATACTTTATGCAAGTTCATGTTTCTGTTCAGTTTTTATTTGTTGTGAACTTGTGATAGTACGTCTCATGTGAGTATCATTTTGCCTGATATATAGCCAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAAGATGGCTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGTAAACTAAGTTTCTTTTCTCAAGTTTTCACTTTTCAGATCATTCATTCCCATTGTTGATTTTATCCTCTCCTTCTAGGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAAAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGAGTTTGGGTATATTCCTTCAATCCCTACATTTTGATTGCTATACTTCTTGGTTTACCACGTATGATTCTTCTCTTCCCATACTTTCATCAAGGAAAGTTTTCCTTATGTGACAGTCATATTAGATTGTTGGAAACTGGGAATTATTGCTCCCCATTCTTGATATTGCACTTTTAATCTCTAACTTAACTGTTCTTTGAAACTTGAAGATGTTATTTCTTCTACCAATCTTAATAATAAATATAATTTCTTACTTCTCGCATCTCTATTTCCAGGTGAATGCTGATTCTCCGTCCACAACCATTGTAGTTTCAAATGCAATATTGAACTCCGAGACTCTGTCTGGGGTCCAACAGAGAATCATGGTGGACAAGCTCCTTAACAATTTAAAGCTGTCAAGTTAGTCTTGTAAACTTTAG

mRNA sequence

ATGGTTGAAAAATCTTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTCGACCTCTCAAACATGGCCAATGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAGCTGAGGTTCTCGAAGCCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGTGGAAGATTGTGTTCTTGGAATCGTGGTTGACTCTAGAGCCGATAATTTTCTTGTTGATATAAAAGGTCCGGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACCAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGAGGGTAGTGAAGGCAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAAGATGGCTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAAAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGAGTTTGGGTGAATGCTGATTCTCCGTCCACAACCATTGTAGTTTCAAATGCAATATTGAACTCCGAGACTCTGTCTGGGGTCCAACAGAGAATCATGGTGGACAAGCTCCTTAACAATTTAAAGCTGTCAAGTTAGTCTTGTAAACTTTAG

Coding sequence (CDS)

ATGGTTGAAAAATCTTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTCGACCTCTCAAACATGGCCAATGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAGCTGAGGTTCTCGAAGCCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGTGGAAGATTGTGTTCTTGGAATCGTGGTTGACTCTAGAGCCGATAATTTTCTTGTTGATATAAAAGGTCCGGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACCAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGAGGGTAGTGAAGGCAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAAGATGGCTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAAAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGAGTTTGGGTGAATGCTGATTCTCCGTCCACAACCATTGTAGTTTCAAATGCAATATTGAACTCCGAGACTCTGTCTGGGGTCCAACAGAGAATCATGGTGGACAAGCTCCTTAACAATTTAAAGCTGTCAAGTTAG

Protein sequence

MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSS

Homology

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BLAST of Carg10348 vs. NCBI nr
Match: KAG6589448.1 (Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 479.6 bits (1233), Expect = 1.6e-131
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1    MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
            MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP
Sbjct: 786  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 845

Query: 61   NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
            NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 846  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 905

Query: 121  EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
            EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 906  EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 965

Query: 181  LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240
            LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK
Sbjct: 966  LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 1025

Query: 241  LSS 244
            LSS
Sbjct: 1026 LSS 1028

[Close]

BLAST of Carg10348 vs. NCBI nr
Match: KAG7023129.1 (putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 479.6 bits (1233), Expect = 1.6e-131
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
           MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240
           LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

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BLAST of Carg10348 vs. NCBI nr
Match: XP_022921727.1 (putative exosome complex component rrp40 [Cucurbita moschata])

HSP 1 Score: 478.8 bits (1231), Expect = 2.8e-131
Identity = 242/243 (99.59%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
           MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANET+KLGGGLRQDHDAISVSKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240
           LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Carg10348 vs. NCBI nr
Match: XP_023515767.1 (putative exosome complex component rrp40 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 476.5 bits (1225), Expect = 1.4e-130
Identity = 241/243 (99.18%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
           MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCVEDCVLGIVVDSR+DNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240
           LESFG KLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK
Sbjct: 181 LESFGNKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Carg10348 vs. NCBI nr
Match: XP_022988424.1 (putative exosome complex component rrp40 [Cucurbita maxima])

HSP 1 Score: 474.2 bits (1219), Expect = 6.9e-130
Identity = 239/243 (98.35%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
           MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRF+KP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFTKP 60

Query: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCVEDCVLGIVVDSR+DNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240
           LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNA+LNSETLSGVQQRIMVD LLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNALLNSETLSGVQQRIMVDMLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Carg10348 vs. ExPASy Swiss-Prot
Match: Q7KWX9 (Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN=exosc3 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.4e-47
Identity = 103/228 (45.18%), Postives = 139/228 (60.96%), Query Frame = 0


Query: 11  TLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNK-YWVESSQ 70
           TL DQ VVPGDV+  + ++    +++G GL Q  D +  +K G LR+SK ++ YW+E+ Q
Sbjct: 3   TLKDQFVVPGDVIGKIGDL---KVRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQ 62

Query: 71  KRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVR 130
           KRYVP VED V+G +++  A++F VDI     A L   +FEG T+ N P   +G L+Y R
Sbjct: 63  KRYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCR 122

Query: 131 VVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLS 190
           V  AN  M PE+ C     KA GFG L  GYM  CS GLS  LLS   C +L+  GK + 
Sbjct: 123 VTVANRDMEPEVVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSE-DCFLLQILGKHIP 182

Query: 191 FETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLN 238
           +E AVG+NGRVW+N+ S   TIVVSN I NS+ +   Q    + K L+
Sbjct: 183 YEIAVGVNGRVWINSGSNHNTIVVSNTIYNSQYIQDDQIEPFILKSLS 226

[Close]

BLAST of Carg10348 vs. ExPASy Swiss-Prot
Match: Q8IPX7 (Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-39
Identity = 91/234 (38.89%), Postives = 139/234 (59.40%), Query Frame = 0


Query: 7   SSSSTLVDQPVVPGDVVLDLSNMA-NETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWV 66
           S++ST+    V+PG+ +  +  +A ++ + LG GLR+  D +  SK G LR  +P  +WV
Sbjct: 2   SATSTI----VMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWV 61

Query: 67  ESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGAL 126
           ++ Q+RY+P   D +LGIV     D + VDI     A +  LAFE  +++N P    G L
Sbjct: 62  DNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDL 121

Query: 127 LYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFG 186
           +Y RV+ A+  + PEL C ++ GK+   G+L DG+ F+CS  L RMLL    CPVL +  
Sbjct: 122 IYARVLNASADIEPELVCVNSVGKSGKLGVLTDGFFFKCSLNLGRMLLRE-NCPVLAALT 181

Query: 187 KKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNL 240
           ++L +E AVG+NGR+W+ A S   T+ ++NAI   E  SG  +   +DK+  NL
Sbjct: 182 RELPYEIAVGVNGRIWLKAHSLKETVALANAISALEQ-SGCAE---IDKICGNL 226

[Close]

BLAST of Carg10348 vs. ExPASy Swiss-Prot
Match: Q3T0E1 (Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.2e-37
Identity = 90/255 (35.29%), Postives = 140/255 (54.90%), Query Frame = 0


Query: 8   SSSTLVDQPVVPGDVV--------------------LDLSNMANETIKLGGGLRQDHDAI 67
           ++ T++DQ V+PG+ +                    L+ +  +   +  G GLR+  D +
Sbjct: 19  AARTVLDQVVLPGEELLLPDQEDGDGPGGAGERPLRLNAAARSRGRVVCGPGLRRCGDRL 78

Query: 68  SVSKVGKLRFSKPNK------YWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPAL 127
            V+K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   
Sbjct: 79  LVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEP 138

Query: 128 AFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLL-KDGY 187
           A L  LAFEG T+RN P  ++G L+Y + V AN  M PE+ C D+ G+A G G++ +DG 
Sbjct: 139 ASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGL 198

Query: 188 MFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNS 236
           +F+ + GL R LL +P C +L+  GK    E   G+NGR+WV A +   T++++N +   
Sbjct: 199 LFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEAC 258

[Close]

BLAST of Carg10348 vs. ExPASy Swiss-Prot
Match: Q7TQK4 (Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-37
Identity = 82/205 (40.00%), Postives = 124/205 (60.49%), Query Frame = 0


Query: 37  GGGLRQDHDAISVSKVGKLRFSKPN-----KYWVESSQKRYVPCVEDCVLGIVVDSRADN 96
           G GLR+  D + V+K G+LR  +P+      YWV+S QKRYVP   D V+GIV+    D 
Sbjct: 68  GPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDI 127

Query: 97  FLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAA 156
           F VD+ G   A L  LAFEG T+RN P  ++G L+Y + V AN  M PE+ C D+ G+A 
Sbjct: 128 FKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDMEPEMVCIDSCGRAN 187

Query: 157 GFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPSTT 216
           G G++ +DG +F+ + GL R LL +P C +++  GK    E   G+NGR+WV A +   T
Sbjct: 188 GMGVIGQDGLLFKVTLGLIRKLL-APDCEIVQELGKLYPLEIVFGMNGRIWVKAKTIQQT 247

Query: 217 IVVSNAILNSETLSGVQQRIMVDKL 236
           ++++N +   E ++  Q++ +  +L
Sbjct: 248 LILANVLEACEHMTTEQRKQIFARL 271

[Close]

BLAST of Carg10348 vs. ExPASy Swiss-Prot
Match: Q9NQT5 (Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-36
Identity = 87/229 (37.99%), Postives = 132/229 (57.64%), Query Frame = 0


Query: 19  PGDVV---LDLSNMANETIKL--GGGLRQDHDAISVSKVGKLRFSKPNK------YWVES 78
           PG  V   L L+  A   +++  G GLR+  D + V+K G+LR  +P        YWV+S
Sbjct: 45  PGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDS 104

Query: 79  SQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLY 138
            QKRYVP   D V+GIV     D F VD+ G   A L  L+FEG T+RN P  ++G L+Y
Sbjct: 105 QQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIY 164

Query: 139 VRVVKANPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESFGK 198
            + V AN  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +++  GK
Sbjct: 165 GQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGK 224

Query: 199 KLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKL 236
               E   G+NGR+WV A +   T++++N +   E ++  Q++ +  +L
Sbjct: 225 LYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRL 272

[Close]

BLAST of Carg10348 vs. ExPASy TrEMBL
Match: A0A6J1E1A1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111429887 PE=3 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.4e-131
Identity = 242/243 (99.59%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
           MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANET+KLGGGLRQDHDAISVSKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240
           LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Carg10348 vs. ExPASy TrEMBL
Match: A0A6J1JLH7 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 PE=3 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 3.3e-130
Identity = 239/243 (98.35%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
           MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRF+KP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFTKP 60

Query: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCVEDCVLGIVVDSR+DNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240
           LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNA+LNSETLSGVQQRIMVD LLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNALLNSETLSGVQQRIMVDMLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Carg10348 vs. ExPASy TrEMBL
Match: A0A6J1I8H3 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 PE=3 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.2e-126
Identity = 231/243 (95.06%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
           MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISV+KVGKLRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVKANPGMNPELACTDASGKAAGFG LKDGY+F+CSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGHLKDGYIFDCSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240
           LES GKKLSFETAVG+NGRVWVNADSPSTTIVVSNAI+NSETLSGVQQRIMVDKLLNNLK
Sbjct: 181 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Carg10348 vs. ExPASy TrEMBL
Match: A0A0A0LP58 (Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.5e-126
Identity = 233/243 (95.88%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
           MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQD DAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180

Query: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240
           LES GKKLSFETAVGLNGRVWVNADSPST IVVSNAILNSETLSGVQQRIMVDKLL NLK
Sbjct: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Carg10348 vs. ExPASy TrEMBL
Match: A0A6J1ECW1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111433176 PE=3 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 8.5e-126
Identity = 230/243 (94.65%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
           MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISV+KVGKLRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGP+LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240
           LES GKKLSFETAVG+NGRVWVNADSPSTTIVVSNAI+NSETLSGVQQRIMVDKLLNNLK
Sbjct: 181 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Carg10348 vs. TAIR 10
Match: AT4G32175.1 (PNAS-3 related )

HSP 1 Score: 349.4 bits (895), Expect = 2.4e-96
Identity = 176/236 (74.58%), Postives = 202/236 (85.59%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60
           M  K S S ++L++Q VVPGDVVLDLSNM N+TIKLG GL QD+DAIS  + GKL +SKP
Sbjct: 1   MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMRAGKLSYSKP 60

Query: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYW+ESS KRY+P  +D VLGIVVDSRADNF VDIKGP LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           E+G LLY+RVVK N GMNPEL+CT+ASGKAA FG L+DG+MFE STGLSRMLL+SPT PV
Sbjct: 121 EVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPV 180

Query: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLL 237
           +E+ GKKLSFE AVGLNGRVWVNA +P   I+V+NAI+NSE+LSG QQRIMV+KLL
Sbjct: 181 IEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAIMNSESLSGTQQRIMVEKLL 236

[Close]

BLAST of Carg10348 vs. TAIR 10
Match: AT2G25355.1 (PNAS-3 related )

HSP 1 Score: 349.0 bits (894), Expect = 3.1e-96
Identity = 171/234 (73.08%), Postives = 196/234 (83.76%), Query Frame = 0


Query: 6   SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWV 65
           S+S ++L+DQ VVPGDVVLDLSNM N+TIKLG GLRQD++ ISV + GKLR+SKPNKYWV
Sbjct: 6   STSPTSLIDQTVVPGDVVLDLSNMTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWV 65

Query: 66  ESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGAL 125
           ESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  L
Sbjct: 66  ESSHKRYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTL 125

Query: 126 LYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFG 185
           LY RVVK N GMNPEL+C D SGKAAGFG LKDG+MFE STGLSRMLLSSPTCPVLE+ G
Sbjct: 126 LYTRVVKTNTGMNPELSCVDESGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALG 185

Query: 186 KKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNL 240
           KKLSFETA GLNGR WV+A +P   I+V+NA++NSETLSG QQRIMV+KLL  +
Sbjct: 186 KKLSFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQQRIMVEKLLEKI 239

[Close]

BLAST of Carg10348 vs. TAIR 10
Match: AT2G25355.2 (PNAS-3 related )

HSP 1 Score: 317.4 bits (812), Expect = 1.0e-86
Identity = 154/211 (72.99%), Postives = 175/211 (82.94%), Query Frame = 0


Query: 29  MANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCVEDCVLGIVVDSR 88
           M N+TIKLG GLRQD++ ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIVVD +
Sbjct: 1   MTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCK 60

Query: 89  ADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASG 148
            +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY RVVK N GMNPEL+C D SG
Sbjct: 61  GENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESG 120

Query: 149 KAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPS 208
           KAAGFG LKDG+MFE STGLSRMLLSSPTCPVLE+ GKKLSFETA GLNGR WV+A +P 
Sbjct: 121 KAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKLSFETAFGLNGRCWVHAAAPR 180

Query: 209 TTIVVSNAILNSETLSGVQQRIMVDKLLNNL 240
             I+V+NA++NSETLSG QQRIMV+KLL  +
Sbjct: 181 IVIIVANALMNSETLSGTQQRIMVEKLLEKI 211

The following BLAST results are available for this feature:

BLAST of Carg10348 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589448.1	1.6e-131	100.00	Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7023129.1	1.6e-131	100.00	putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp....	[more]
XP_022921727.1	2.8e-131	99.59	putative exosome complex component rrp40 [Cucurbita moschata]	[more]
XP_023515767.1	1.4e-130	99.18	putative exosome complex component rrp40 [Cucurbita pepo subsp. pepo]	[more]
XP_022988424.1	6.9e-130	98.35	putative exosome complex component rrp40 [Cucurbita maxima]	[more]

BLAST of Carg10348 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7KWX9	3.4e-47	45.18	Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN...	[more]
Q8IPX7	1.5e-39	38.89	Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1...	[more]
Q3T0E1	4.2e-37	35.29	Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1	[more]
Q7TQK4	9.3e-37	40.00	Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3	[more]
Q9NQT5	2.1e-36	37.99	Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3	[more]

BLAST of Carg10348 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1A1	1.4e-131	99.59	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11142988...	[more]
A0A6J1JLH7	3.3e-130	98.35	Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 ...	[more]
A0A6J1I8H3	2.2e-126	95.06	Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 ...	[more]
A0A0A0LP58	6.5e-126	95.88	Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 P...	[more]
A0A6J1ECW1	8.5e-126	94.65	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11143317...	[more]

BLAST of Carg10348 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32175.1	2.4e-96	74.58	PNAS-3 related	[more]
AT2G25355.1	3.1e-96	73.08	PNAS-3 related	[more]
AT2G25355.2	1.0e-86	72.99	PNAS-3 related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.100		coord: 7..73 e-value: 2.8E-14 score: 55.0
None	No IPR available	GENE3D	2.40.50.140		coord: 78..154 e-value: 7.3E-25 score: 88.4
None	No IPR available	PANTHER	PTHR21321:SF1	EXOSOME COMPLEX COMPONENT RRP40	coord: 11..237
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 9..70
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 155..238 e-value: 3.5E-27 score: 95.9
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 158..240
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 159..207 e-value: 2.0E-16 score: 60.2
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 11..237
IPR037319	Rrp40, S1 domain	CDD	cd05790	S1_Rrp40	coord: 71..156 e-value: 7.07447E-40 score: 130.842
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 70..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10348-RA	Carg10348-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071034	CUT catabolic process
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding